Wall clock time and date at job start Tue Mar 31 2020 08:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86797 * 120.00152 * 2 1 4 4 H 1.48504 * 109.47345 * 239.99938 * 3 2 1 5 5 H 1.48506 * 109.47373 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47071 * 119.99902 * 3 2 1 7 7 C 1.39928 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99796 * 162.55990 * 7 2 1 9 9 C 1.41217 * 119.99793 * 342.56268 * 7 2 1 10 10 C 1.39965 * 119.49439 * 333.50989 * 9 7 2 11 11 C 1.39889 * 120.10968 * 179.76623 * 10 9 7 12 12 C 1.40861 * 121.13612 * 180.24548 * 11 10 9 13 13 C 1.36185 * 119.60344 * 180.23838 * 12 11 10 14 14 C 1.39249 * 120.94543 * 0.02562 * 13 12 11 15 15 C 1.36535 * 120.97977 * 359.97438 * 14 13 12 16 16 C 1.39813 * 119.73638 * 0.02562 * 15 14 13 17 17 C 1.46310 * 121.16529 * 179.97438 * 16 15 14 18 18 C 1.48184 * 120.34018 * 0.04049 * 17 16 15 19 19 C 1.39482 * 120.10576 * 309.97801 * 18 17 16 20 20 C 1.37997 * 119.98245 * 179.97438 * 19 18 17 21 21 C 1.38270 * 120.18676 * 359.97438 * 20 19 18 22 22 C 1.38809 * 120.21103 * 0.02562 * 21 20 19 23 23 O 1.35909 * 119.98851 * 180.02562 * 22 21 20 24 24 C 1.38513 * 120.01937 * 359.78120 * 22 21 20 25 25 C 1.36672 * 119.31649 * 180.02562 * 17 16 15 26 26 H 0.97011 * 119.99453 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.93926 * 0.02562 * 10 9 7 28 28 H 1.08001 * 120.19453 * 0.25681 * 12 11 10 29 29 H 1.08003 * 119.52683 * 180.02562 * 13 12 11 30 30 H 1.08005 * 119.50762 * 179.97438 * 14 13 12 31 31 H 1.08000 * 120.13380 * 180.02562 * 15 14 13 32 32 H 1.07999 * 120.00972 * 0.02562 * 19 18 17 33 33 H 1.07998 * 119.90607 * 179.97438 * 20 19 18 34 34 H 1.08003 * 119.89307 * 180.02562 * 21 20 19 35 35 H 0.96702 * 113.99821 * 89.99741 * 23 22 21 36 36 H 1.08001 * 120.09859 * 180.23678 * 24 22 21 37 37 H 1.08001 * 119.70366 * 180.02562 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0962 1.6964 -1.2125 5 1 1.2774 2.7465 0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0507 -1.2335 -0.2798 9 6 1.3505 -2.4065 0.3676 10 6 0.2481 -2.3500 1.2282 11 6 -0.4158 -3.5250 1.5962 12 6 -1.5305 -3.4927 2.4568 13 6 -2.1504 -4.6561 2.7987 14 6 -1.6979 -5.8790 2.3100 15 6 -0.6205 -5.9465 1.4741 16 6 0.0421 -4.7734 1.1005 17 6 1.2001 -4.8095 0.2070 18 6 1.6958 -6.1011 -0.3240 19 6 1.9316 -7.1691 0.5416 20 6 2.3928 -8.3710 0.0444 21 6 2.6218 -8.5206 -1.3110 22 6 2.3899 -7.4629 -2.1795 23 8 2.6161 -7.6151 -3.5110 24 6 1.9231 -6.2540 -1.6903 25 6 1.8196 -3.6397 -0.1332 26 1 -0.4850 0.8402 -0.0004 27 1 -0.0930 -1.3971 1.6053 28 1 -1.8915 -2.5509 2.8429 29 1 -3.0052 -4.6299 3.4583 30 1 -2.2068 -6.7875 2.5966 31 1 -0.2814 -6.9023 1.1028 32 1 1.7525 -7.0558 1.6006 33 1 2.5753 -9.1970 0.7157 34 1 2.9824 -9.4634 -1.6951 35 1 1.8487 -7.9324 -4.0065 36 1 1.7386 -5.4315 -2.3653 37 1 2.6746 -3.6591 -0.7927 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240925686.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:44 Heat of formation + Delta-G solvation = -5.050717 kcal Electronic energy + Delta-G solvation = -21479.138042 eV Core-core repulsion = 18342.664802 eV Total energy + Delta-G solvation = -3136.473240 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.105 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.05781 -40.08620 -37.77242 -37.36206 -35.25790 -33.50368 -31.65360 -31.38411 -30.38519 -29.28193 -27.10186 -24.50055 -23.63862 -23.33618 -22.68938 -21.58791 -19.66116 -18.68694 -17.86984 -17.48193 -17.31258 -16.68599 -16.49323 -16.19086 -15.86401 -15.17308 -14.89807 -14.65463 -14.27067 -14.22306 -14.00159 -13.79383 -13.35038 -13.14578 -12.99969 -12.80279 -12.67077 -12.53661 -12.49254 -12.09467 -11.71139 -11.63742 -11.36837 -11.17920 -10.98579 -10.46488 -9.79682 -9.55745 -9.26867 -8.70039 -8.39243 -6.33832 -0.18781 0.32818 0.44531 0.57462 1.33954 1.38537 1.47512 1.55978 2.15753 2.28569 2.71022 3.01320 3.28702 3.73539 3.78706 4.03322 4.09160 4.22661 4.28350 4.32186 4.37664 4.57398 4.63205 4.74248 4.82828 4.88753 4.97272 5.00480 5.15641 5.20464 5.27900 5.40492 5.45576 5.52775 5.62337 5.71262 5.72097 5.84682 5.91127 5.96616 6.05368 6.22755 6.43094 6.62572 6.83876 6.85960 6.91847 8.27219 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.013276 B = 0.005500 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.553267 B = 5089.593466 C = 6823.280714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.489 4.489 8 H 0.079 0.921 9 C 0.075 3.925 10 C -0.231 4.231 11 C -0.023 4.023 12 C -0.161 4.161 13 C -0.106 4.106 14 C -0.177 4.177 15 C -0.086 4.086 16 C -0.136 4.136 17 C -0.045 4.045 18 C -0.024 4.024 19 C -0.126 4.126 20 C -0.092 4.092 21 C -0.147 4.147 22 C 0.104 3.896 23 O -0.509 6.509 24 C -0.155 4.155 25 C -0.152 4.152 26 H 0.289 0.711 27 H 0.099 0.901 28 H 0.110 0.890 29 H 0.139 0.861 30 H 0.143 0.857 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.163 0.837 34 H 0.156 0.844 35 H 0.409 0.591 36 H 0.111 0.889 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.290 -13.424 -0.055 13.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.181 4.181 3 Si 0.802 3.198 4 H -0.182 1.182 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.518 4.518 8 H 0.097 0.903 9 C 0.073 3.927 10 C -0.252 4.252 11 C -0.024 4.024 12 C -0.180 4.180 13 C -0.124 4.124 14 C -0.195 4.195 15 C -0.104 4.104 16 C -0.137 4.137 17 C -0.046 4.046 18 C -0.024 4.024 19 C -0.144 4.144 20 C -0.110 4.110 21 C -0.165 4.165 22 C 0.060 3.940 23 O -0.322 6.322 24 C -0.174 4.174 25 C -0.170 4.170 26 H 0.100 0.900 27 H 0.117 0.883 28 H 0.128 0.872 29 H 0.157 0.843 30 H 0.161 0.839 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.181 0.819 34 H 0.173 0.827 35 H 0.268 0.732 36 H 0.129 0.871 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.640 -13.071 0.039 13.087 hybrid contribution -0.229 1.438 -0.418 1.515 sum 0.411 -11.634 -0.379 11.647 Atomic orbital electron populations 1.69905 1.09109 1.30718 1.34375 1.26768 0.95476 1.04550 0.91350 0.85252 0.78817 0.75544 0.80144 1.18192 1.19072 1.18470 1.19866 0.98207 0.92469 1.41228 0.90312 1.17719 0.92620 0.92548 0.89811 1.21077 1.02898 0.95914 1.05280 1.18238 0.95141 0.93098 0.95889 1.21069 0.97087 0.98843 1.00981 1.20955 0.99684 0.92104 0.99619 1.20894 0.98890 0.98165 1.01536 1.21066 0.95494 0.96713 0.97138 1.18813 0.98410 0.93459 1.02971 1.19519 0.95417 0.91999 0.97619 1.18711 0.97953 0.92761 0.92994 1.21445 1.00346 0.92727 0.99842 1.21303 0.97080 0.97270 0.95302 1.21702 1.02040 0.99099 0.93639 1.18417 0.98616 0.92571 0.84442 1.84767 1.41866 1.89231 1.16308 1.21561 1.02262 0.98579 0.95011 1.21212 1.01474 0.92371 1.01978 0.90019 0.88276 0.87185 0.84280 0.83888 0.84906 0.85265 0.81913 0.82663 0.73208 0.87094 0.87922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.54 11.01 21.82 0.24 -43.30 16 2 C 0.03 1.75 5.10 85.25 0.43 2.19 16 3 Si 0.98 38.51 29.59 68.60 2.03 40.54 16 4 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 5 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 6 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 7 C -0.49 -26.65 8.99 23.41 0.21 -26.44 16 8 H 0.08 4.10 7.90 -2.91 -0.02 4.08 16 9 C 0.08 4.16 5.55 -21.42 -0.12 4.04 16 10 C -0.23 -12.74 8.38 23.09 0.19 -12.55 16 11 C -0.02 -1.16 5.74 -21.33 -0.12 -1.28 16 12 C -0.16 -6.88 9.78 22.43 0.22 -6.66 16 13 C -0.11 -3.67 9.95 22.03 0.22 -3.45 16 14 C -0.18 -5.77 9.96 22.11 0.22 -5.55 16 15 C -0.09 -3.16 8.68 22.25 0.19 -2.97 16 16 C -0.14 -6.12 5.88 -19.89 -0.12 -6.24 16 17 C -0.05 -2.03 5.59 -18.90 -0.11 -2.13 16 18 C -0.02 -0.87 5.08 -20.07 -0.10 -0.97 16 19 C -0.13 -3.66 7.67 22.51 0.17 -3.49 16 20 C -0.09 -2.02 10.03 22.22 0.22 -1.80 16 21 C -0.15 -3.24 9.98 22.41 0.22 -3.02 16 22 C 0.10 2.84 6.70 22.47 0.15 2.99 16 23 O -0.51 -12.07 13.50 -92.53 -1.25 -13.32 16 24 C -0.16 -5.28 9.43 22.60 0.21 -5.07 16 25 C -0.15 -7.57 9.10 22.61 0.21 -7.36 16 26 H 0.29 13.96 8.30 -92.70 -0.77 13.19 16 27 H 0.10 5.73 6.18 -2.91 -0.02 5.72 16 28 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 29 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 30 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 31 H 0.13 4.18 5.69 -2.91 -0.02 4.16 16 32 H 0.13 3.67 7.30 -2.91 -0.02 3.65 16 33 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 35 H 0.41 5.49 9.06 -74.06 -0.67 4.82 16 36 H 0.11 4.06 8.04 -2.91 -0.02 4.03 16 37 H 0.10 4.90 8.01 -2.91 -0.02 4.88 16 Total: -1.00 -66.10 317.80 3.77 -62.33 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: 0.44 Total: 33.50 kcal Atomic # 6 Polarization: -82.07 SS G_CDS: 2.31 Total: -79.76 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.24 Total: -43.30 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -1.25 Total: -13.32 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Total: -66.10 3.77 -62.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240925686.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.278 kcal (2) G-P(sol) polarization free energy of solvation -66.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds