Wall clock time and date at job start Tue Mar 31 2020 06:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.38906 * 120.54828 * 5.11788 * 3 2 1 5 5 C 1.39738 * 119.77310 * 179.97438 * 4 3 2 6 6 C 1.47361 * 119.53007 * 179.97438 * 5 4 3 7 7 C 1.40375 * 126.49850 * 309.96228 * 6 5 4 8 8 N 1.30869 * 108.81443 * 180.02562 * 7 6 5 9 9 N 1.39903 * 109.46639 * 359.97438 * 8 7 6 10 10 C 1.36449 * 132.27013 * 180.02562 * 9 8 7 11 11 C 1.35763 * 119.12047 * 179.97438 * 10 9 8 12 12 C 1.40004 * 119.38321 * 0.27132 * 11 10 9 13 13 N 1.31521 * 120.16873 * 359.45034 * 12 11 10 14 14 C 1.33344 * 120.86440 * 0.54677 * 13 12 11 15 15 C 1.40324 * 120.93922 * 0.25772 * 5 4 3 16 16 C 1.35783 * 121.16659 * 359.46740 * 15 5 4 17 17 C 1.41168 * 120.13889 * 0.52977 * 16 15 5 18 18 C 1.40256 * 120.45782 * 179.75744 * 17 16 15 19 19 H 1.07993 * 119.99695 * 149.92476 * 18 17 16 20 20 C 1.40110 * 120.00081 * 329.92282 * 18 17 16 21 21 N 1.30759 * 119.99981 * 161.91400 * 20 18 17 22 22 Si 1.86805 * 120.00058 * 341.92200 * 20 18 17 23 23 H 1.48496 * 109.47488 * 95.40030 * 22 20 18 24 24 H 1.48509 * 109.46948 * 215.40068 * 22 20 18 25 25 H 1.48496 * 109.47178 * 335.39546 * 22 20 18 26 26 H 1.07993 * 120.11994 * 359.95882 * 4 3 2 27 27 H 1.07997 * 125.59566 * 0.02820 * 7 6 5 28 28 H 1.08001 * 120.43402 * 359.93331 * 10 9 8 29 29 H 1.08001 * 120.30748 * 180.02562 * 11 10 9 30 30 H 1.08004 * 119.91622 * 179.72362 * 12 11 10 31 31 H 1.07999 * 119.41798 * 179.72150 * 15 5 4 32 32 H 1.08000 * 119.93224 * 180.25858 * 16 15 5 33 33 H 0.96998 * 119.99783 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2746 -1.1905 -0.1067 5 6 4.6718 -1.1710 -0.1056 6 6 5.4160 -2.4379 -0.2185 7 6 5.2124 -3.5969 0.5469 8 7 6.0627 -4.5132 0.1596 9 7 6.8593 -4.0040 -0.8717 10 6 7.8742 -4.5499 -1.6024 11 6 8.4760 -3.7997 -2.5606 12 6 8.0469 -2.4841 -2.7734 13 7 7.0625 -1.9860 -2.0575 14 6 6.4654 -2.7154 -1.1144 15 6 5.3764 0.0372 0.0075 16 6 4.7245 1.2240 0.1084 17 6 3.3132 1.2595 0.1122 18 6 2.6330 2.4812 0.2212 19 1 1.6632 2.6020 -0.2382 20 6 3.2118 3.5448 0.9260 21 7 2.7762 4.7641 0.7433 22 14 4.6058 3.2211 2.1266 23 1 5.9069 3.4409 1.4455 24 1 4.4892 4.1470 3.2819 25 1 4.5294 1.8181 2.6071 26 1 2.7460 -2.1286 -0.1900 27 1 4.4751 -3.7134 1.3274 28 1 8.1948 -5.5650 -1.4203 29 1 9.2809 -4.2127 -3.1505 30 1 8.5226 -1.8782 -3.5304 31 1 6.4563 0.0233 0.0103 32 1 5.2868 2.1425 0.1903 33 1 3.1771 5.5005 1.2310 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240928797.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:29 Heat of formation + Delta-G solvation = 163.349709 kcal Electronic energy + Delta-G solvation = -20922.050353 eV Core-core repulsion = 17721.631911 eV Total energy + Delta-G solvation = -3200.418442 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.086 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.08802 -38.21115 -37.60359 -35.21302 -34.37024 -33.64447 -31.28252 -30.97381 -30.18690 -28.48126 -25.43412 -24.74800 -23.01569 -22.42304 -21.63045 -20.52957 -18.20278 -17.75120 -17.30057 -16.93380 -15.91424 -15.89397 -15.46243 -14.43617 -14.30315 -14.10359 -13.74520 -13.36518 -13.04304 -12.91248 -12.73374 -12.51513 -12.46592 -11.95803 -11.79275 -11.51000 -11.38215 -11.17736 -10.94045 -10.81319 -10.32113 -10.14970 -9.88736 -9.69135 -9.45336 -9.40775 -8.13905 -7.88072 -7.32151 -7.16065 -4.77330 0.57387 0.91923 2.02177 2.16217 2.34903 2.83073 2.96790 3.05742 3.16583 3.54134 3.74769 3.86453 3.98933 4.04804 4.23041 4.39166 4.42094 4.85481 5.12196 5.22461 5.29002 5.35859 5.44619 5.69164 5.80528 5.94758 6.02900 6.16499 6.42223 6.48645 6.58726 6.66380 6.85788 7.11899 7.33205 7.46562 7.57595 7.68050 7.77048 7.81417 7.98789 8.30820 8.40563 8.76137 9.66491 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.019255 B = 0.004717 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.782289 B = 5935.150566 C = 6675.699040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C 0.298 3.702 3 C -0.172 4.172 4 C 0.005 3.995 5 C -0.160 4.160 6 C -0.124 4.124 7 C 0.087 3.913 8 N -0.319 5.319 9 N -0.318 5.318 10 C 0.157 3.843 11 C -0.230 4.230 12 C 0.155 3.845 13 N -0.437 5.437 14 C 0.234 3.766 15 C -0.014 4.014 16 C -0.236 4.236 17 C 0.130 3.870 18 C -0.406 4.406 19 H 0.098 0.902 20 C 0.081 3.919 21 N -0.772 5.772 22 Si 0.916 3.084 23 H -0.263 1.263 24 H -0.286 1.286 25 H -0.235 1.235 26 H 0.104 0.896 27 H 0.198 0.802 28 H 0.172 0.828 29 H 0.161 0.839 30 H 0.174 0.826 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.536 -12.139 -3.078 19.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.178 5.178 2 C -0.012 4.012 3 C -0.178 4.178 4 C -0.016 4.016 5 C -0.162 4.162 6 C -0.136 4.136 7 C -0.091 4.091 8 N -0.143 5.143 9 N -0.090 5.090 10 C 0.022 3.978 11 C -0.255 4.255 12 C -0.030 4.030 13 N -0.147 5.147 14 C 0.008 3.992 15 C -0.033 4.033 16 C -0.255 4.255 17 C 0.124 3.876 18 C -0.432 4.432 19 H 0.116 0.884 20 C -0.143 4.143 21 N -0.393 5.393 22 Si 0.741 3.259 23 H -0.188 1.188 24 H -0.213 1.213 25 H -0.158 1.158 26 H 0.122 0.878 27 H 0.215 0.785 28 H 0.189 0.811 29 H 0.178 0.822 30 H 0.192 0.808 31 H 0.114 0.886 32 H 0.126 0.874 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.560 -12.196 -2.735 17.719 hybrid contribution 1.156 0.082 0.294 1.195 sum 13.715 -12.114 -2.442 18.461 Atomic orbital electron populations 1.81040 1.12652 1.09652 1.14473 1.25661 0.92597 0.91562 0.91397 1.16624 0.83312 0.93710 1.24110 1.20605 0.92411 0.95121 0.93483 1.16851 0.90863 0.89311 1.19197 1.18556 0.99508 0.96538 0.98990 1.24128 0.96598 0.90215 0.98157 1.77475 1.09547 1.22324 1.04913 1.46845 1.24358 1.11960 1.25792 1.21927 0.86173 0.99871 0.89871 1.21725 1.05220 0.96702 1.01809 1.23320 0.90938 0.92918 0.95840 1.68061 1.08222 1.34040 1.04345 1.20692 0.99229 0.82130 0.97116 1.20347 0.97758 0.91584 0.93633 1.20559 0.93707 0.96918 1.14343 1.18480 0.91009 0.90608 0.87500 1.19622 1.05088 0.93058 1.25431 0.88422 1.26451 0.97302 0.93733 0.96829 1.69646 1.36661 1.00419 1.32563 0.86213 0.79607 0.81239 0.78882 1.18847 1.21267 1.15757 0.87791 0.78533 0.81061 0.82163 0.80850 0.88567 0.87407 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -12.05 18.54 41.84 0.78 -11.28 16 2 C 0.30 6.92 14.35 -22.47 -0.32 6.60 16 3 C -0.17 -3.82 5.93 -104.30 -0.62 -4.44 16 4 C 0.01 0.10 9.40 -38.77 -0.36 -0.27 16 5 C -0.16 -3.08 5.78 -104.84 -0.61 -3.69 16 6 C -0.12 -2.15 5.62 -104.44 -0.59 -2.74 16 7 C 0.09 1.31 11.86 -17.16 -0.20 1.11 16 8 N -0.32 -4.85 12.59 30.74 0.39 -4.46 16 9 N -0.32 -4.57 3.88 -11.89 -0.05 -4.61 16 10 C 0.16 1.52 11.30 -16.38 -0.19 1.34 16 11 C -0.23 -1.77 10.05 -39.81 -0.40 -2.17 16 12 C 0.16 1.57 11.28 -17.02 -0.19 1.38 16 13 N -0.44 -6.66 10.47 -11.93 -0.12 -6.79 16 14 C 0.23 3.87 7.83 -155.59 -1.22 2.65 16 15 C -0.01 -0.28 9.56 -39.68 -0.38 -0.66 16 16 C -0.24 -5.14 7.09 -39.35 -0.28 -5.42 16 17 C 0.13 3.05 5.26 -104.60 -0.55 2.50 16 18 C -0.41 -10.24 8.99 -38.12 -0.34 -10.59 16 19 H 0.10 2.68 7.64 -52.49 -0.40 2.28 16 20 C 0.08 1.95 5.41 -17.31 -0.09 1.86 16 21 N -0.77 -18.90 13.92 55.56 0.77 -18.13 16 22 Si 0.92 18.77 24.52 -169.99 -4.17 14.61 16 23 H -0.26 -5.15 6.71 56.52 0.38 -4.77 16 24 H -0.29 -5.67 7.11 56.52 0.40 -5.26 16 25 H -0.24 -4.89 6.86 56.52 0.39 -4.50 16 26 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 27 H 0.20 2.37 8.06 -52.49 -0.42 1.95 16 28 H 0.17 1.06 8.06 -52.49 -0.42 0.63 16 29 H 0.16 0.55 8.06 -52.49 -0.42 0.12 16 30 H 0.17 1.11 8.06 -52.48 -0.42 0.69 16 31 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 32 H 0.11 2.30 4.75 -52.49 -0.25 2.05 16 33 H 0.29 6.41 8.29 -40.82 -0.34 6.07 16 LS Contribution 303.35 15.07 4.57 4.57 Total: -1.00 -30.06 303.35 -6.53 -36.59 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -2.36 Total: 2.04 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -6.34 Total: -12.53 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 1.77 Total: -45.27 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -4.17 Total: 14.61 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.06 -6.53 -36.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240928797.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.941 kcal (2) G-P(sol) polarization free energy of solvation -30.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds