Wall clock time and date at job start Tue Mar 31 2020 06:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.38906 * 120.54828 * 5.11788 * 3 2 1 5 5 C 1.39738 * 119.77310 * 179.97438 * 4 3 2 6 6 C 1.47361 * 119.53007 * 179.97438 * 5 4 3 7 7 C 1.40375 * 126.49850 * 309.96228 * 6 5 4 8 8 N 1.30869 * 108.81443 * 180.02562 * 7 6 5 9 9 N 1.39903 * 109.46639 * 359.97438 * 8 7 6 10 10 C 1.36449 * 132.27013 * 180.02562 * 9 8 7 11 11 C 1.35763 * 119.12047 * 179.97438 * 10 9 8 12 12 C 1.40004 * 119.38321 * 0.27132 * 11 10 9 13 13 N 1.31521 * 120.16873 * 359.45034 * 12 11 10 14 14 C 1.33344 * 120.86440 * 0.54677 * 13 12 11 15 15 C 1.40324 * 120.93922 * 0.25772 * 5 4 3 16 16 C 1.35783 * 121.16659 * 359.46740 * 15 5 4 17 17 C 1.41168 * 120.13889 * 0.52977 * 16 15 5 18 18 C 1.40256 * 120.45782 * 179.75744 * 17 16 15 19 19 H 1.07993 * 119.99695 * 149.92476 * 18 17 16 20 20 C 1.40110 * 120.00081 * 329.92282 * 18 17 16 21 21 N 1.30759 * 119.99981 * 161.91400 * 20 18 17 22 22 Si 1.86805 * 120.00058 * 341.92200 * 20 18 17 23 23 H 1.48496 * 109.47488 * 95.40030 * 22 20 18 24 24 H 1.48509 * 109.46948 * 215.40068 * 22 20 18 25 25 H 1.48496 * 109.47178 * 335.39546 * 22 20 18 26 26 H 1.07993 * 120.11994 * 359.95882 * 4 3 2 27 27 H 1.07997 * 125.59566 * 0.02820 * 7 6 5 28 28 H 1.08001 * 120.43402 * 359.93331 * 10 9 8 29 29 H 1.08001 * 120.30748 * 180.02562 * 11 10 9 30 30 H 1.08004 * 119.91622 * 179.72362 * 12 11 10 31 31 H 1.07999 * 119.41798 * 179.72150 * 15 5 4 32 32 H 1.08000 * 119.93224 * 180.25858 * 16 15 5 33 33 H 0.96998 * 119.99783 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2746 -1.1905 -0.1067 5 6 4.6718 -1.1710 -0.1056 6 6 5.4160 -2.4379 -0.2185 7 6 5.2124 -3.5969 0.5469 8 7 6.0627 -4.5132 0.1596 9 7 6.8593 -4.0040 -0.8717 10 6 7.8742 -4.5499 -1.6024 11 6 8.4760 -3.7997 -2.5606 12 6 8.0469 -2.4841 -2.7734 13 7 7.0625 -1.9860 -2.0575 14 6 6.4654 -2.7154 -1.1144 15 6 5.3764 0.0372 0.0075 16 6 4.7245 1.2240 0.1084 17 6 3.3132 1.2595 0.1122 18 6 2.6330 2.4812 0.2212 19 1 1.6632 2.6020 -0.2382 20 6 3.2118 3.5448 0.9260 21 7 2.7762 4.7641 0.7433 22 14 4.6058 3.2211 2.1266 23 1 5.9069 3.4409 1.4455 24 1 4.4892 4.1470 3.2819 25 1 4.5294 1.8181 2.6071 26 1 2.7460 -2.1286 -0.1900 27 1 4.4751 -3.7134 1.3274 28 1 8.1948 -5.5650 -1.4203 29 1 9.2809 -4.2127 -3.1505 30 1 8.5226 -1.8782 -3.5304 31 1 6.4563 0.0233 0.0103 32 1 5.2868 2.1425 0.1903 33 1 3.1771 5.5005 1.2310 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240928797.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:28 Heat of formation + Delta-G solvation = 145.703302 kcal Electronic energy + Delta-G solvation = -20922.815558 eV Core-core repulsion = 17721.631911 eV Total energy + Delta-G solvation = -3201.183648 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.086 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -43.10887 -39.69903 -38.76823 -37.05122 -35.93137 -34.84844 -32.78287 -32.04968 -31.76728 -29.81709 -26.95325 -25.63361 -24.24655 -23.91089 -23.16543 -21.84407 -19.52310 -19.38457 -18.49507 -17.98806 -17.26119 -16.87858 -16.77291 -15.99116 -15.79236 -15.42336 -14.97570 -14.73839 -14.51994 -14.48110 -14.02351 -13.73667 -13.69686 -13.55728 -13.50712 -13.20046 -12.89194 -12.68984 -12.35137 -12.08533 -11.87050 -11.77294 -11.57055 -11.05965 -10.65853 -10.40554 -9.67620 -9.53226 -9.07371 -8.48362 -6.58269 -0.29264 0.00502 0.29534 0.77858 1.23703 1.29410 1.42189 1.52443 1.70988 1.99428 2.09716 2.31240 2.56858 2.65387 3.10440 3.23770 3.50580 3.54645 3.70733 4.17359 4.20039 4.28362 4.33715 4.54394 4.58584 4.72422 4.77676 4.79263 4.91613 5.16551 5.23244 5.37933 5.44165 5.65082 5.72442 5.79380 5.98437 6.05809 6.21868 6.50873 6.53469 6.63052 6.85886 6.90952 7.98600 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.019255 B = 0.004717 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.782289 B = 5935.150566 C = 6675.699040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C 0.304 3.696 3 C -0.185 4.185 4 C 0.003 3.997 5 C -0.126 4.126 6 C -0.186 4.186 7 C 0.095 3.905 8 N -0.338 5.338 9 N -0.321 5.321 10 C 0.140 3.860 11 C -0.204 4.204 12 C 0.171 3.829 13 N -0.495 5.495 14 C 0.242 3.758 15 C -0.014 4.014 16 C -0.240 4.240 17 C 0.122 3.878 18 C -0.450 4.450 19 H 0.054 0.946 20 C 0.051 3.949 21 N -0.818 5.818 22 Si 0.964 3.036 23 H -0.244 1.244 24 H -0.274 1.274 25 H -0.241 1.241 26 H 0.128 0.872 27 H 0.217 0.783 28 H 0.209 0.791 29 H 0.216 0.784 30 H 0.213 0.787 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.857 -15.318 -4.031 24.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.203 5.203 2 C -0.005 4.005 3 C -0.191 4.191 4 C -0.017 4.017 5 C -0.128 4.128 6 C -0.199 4.199 7 C -0.082 4.082 8 N -0.162 5.162 9 N -0.092 5.092 10 C 0.007 3.993 11 C -0.227 4.227 12 C -0.011 4.011 13 N -0.207 5.207 14 C 0.013 3.987 15 C -0.033 4.033 16 C -0.259 4.259 17 C 0.117 3.883 18 C -0.477 4.477 19 H 0.072 0.928 20 C -0.168 4.168 21 N -0.441 5.441 22 Si 0.785 3.215 23 H -0.168 1.168 24 H -0.201 1.201 25 H -0.164 1.164 26 H 0.145 0.855 27 H 0.234 0.766 28 H 0.226 0.774 29 H 0.233 0.767 30 H 0.230 0.770 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 16.910 -15.407 -3.717 23.176 hybrid contribution 0.159 0.674 0.286 0.749 sum 17.069 -14.733 -3.431 22.807 Atomic orbital electron populations 1.81009 1.13292 1.10482 1.15507 1.25935 0.92923 0.90835 0.90817 1.16858 0.82867 0.94492 1.24857 1.20835 0.92849 0.95009 0.93050 1.17118 0.90727 0.90330 1.14625 1.18402 1.02288 0.96642 1.02593 1.24374 0.96592 0.89228 0.98008 1.77427 1.10309 1.22502 1.05921 1.47134 1.24887 1.11551 1.25618 1.22920 0.84943 1.01910 0.89551 1.22379 1.04896 0.95090 1.00383 1.24261 0.88374 0.94338 0.94135 1.68154 1.11132 1.35286 1.06147 1.20757 0.98258 0.83009 0.96675 1.20575 0.98659 0.91286 0.92772 1.20624 0.92846 0.97907 1.14565 1.18591 0.91957 0.90284 0.87474 1.19445 1.04310 0.95165 1.28826 0.92756 1.27096 0.99143 0.93127 0.97480 1.69663 1.38757 1.01234 1.34401 0.85503 0.77839 0.80760 0.77409 1.16844 1.20061 1.16437 0.85451 0.76627 0.77410 0.76710 0.77047 0.86926 0.87020 0.88525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -26.30 18.54 19.00 0.35 -25.94 16 2 C 0.30 14.72 14.35 88.33 1.27 15.98 16 3 C -0.18 -8.45 5.93 -19.66 -0.12 -8.57 16 4 C 0.00 0.14 9.40 22.79 0.21 0.35 16 5 C -0.13 -4.72 5.78 -20.01 -0.12 -4.84 16 6 C -0.19 -6.18 5.62 -19.74 -0.11 -6.29 16 7 C 0.10 2.72 11.86 85.36 1.01 3.73 16 8 N -0.34 -9.47 12.59 -56.67 -0.71 -10.18 16 9 N -0.32 -8.16 3.88 -191.52 -0.74 -8.90 16 10 C 0.14 2.00 11.30 83.40 0.94 2.95 16 11 C -0.20 -1.81 10.05 22.12 0.22 -1.59 16 12 C 0.17 2.57 11.28 85.17 0.96 3.53 16 13 N -0.50 -13.54 10.47 -191.66 -2.01 -15.54 16 14 C 0.24 7.36 7.83 133.87 1.05 8.40 16 15 C -0.01 -0.54 9.56 22.21 0.21 -0.33 16 16 C -0.24 -10.47 7.09 22.42 0.16 -10.31 16 17 C 0.12 5.95 5.26 -19.85 -0.10 5.85 16 18 C -0.45 -24.28 8.99 23.22 0.21 -24.07 16 19 H 0.05 3.29 7.64 -2.91 -0.02 3.26 16 20 C 0.05 2.58 5.41 85.31 0.46 3.04 16 21 N -0.82 -42.27 13.92 21.86 0.30 -41.96 16 22 Si 0.96 38.99 24.52 68.60 1.68 40.67 16 23 H -0.24 -9.03 6.71 99.48 0.67 -8.36 16 24 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 25 H -0.24 -9.89 6.86 99.48 0.68 -9.21 16 26 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 27 H 0.22 4.84 8.06 -2.91 -0.02 4.82 16 28 H 0.21 1.33 8.06 -2.91 -0.02 1.30 16 29 H 0.22 -0.40 8.06 -2.91 -0.02 -0.42 16 30 H 0.21 1.39 8.06 -2.91 -0.02 1.37 16 31 H 0.11 4.04 8.06 -2.91 -0.02 4.02 16 32 H 0.11 4.72 4.75 -2.91 -0.01 4.71 16 33 H 0.30 13.82 8.29 -92.71 -0.77 13.05 16 Total: -1.00 -71.18 303.35 6.25 -64.93 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 1.11 Total: 9.08 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: 6.26 Total: -12.16 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -2.81 Total: -102.53 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 1.68 Total: 40.67 kcal Total: -71.18 6.25 -64.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240928797.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.633 kcal (2) G-P(sol) polarization free energy of solvation -71.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds