Wall clock time and date at job start Tue Mar 31 2020 08:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86805 * 119.99652 * 2 1 4 4 H 1.48499 * 109.46909 * 239.99708 * 3 2 1 5 5 H 1.48500 * 109.47398 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47141 * 120.00252 * 3 2 1 7 7 C 1.39917 * 120.00390 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00344 * 198.22013 * 7 2 1 9 9 C 1.41215 * 119.99588 * 18.22384 * 7 2 1 10 10 C 1.39978 * 119.49018 * 25.66158 * 9 7 2 11 11 C 1.39890 * 120.12012 * 180.02562 * 10 9 7 12 12 C 1.40860 * 121.13932 * 179.97438 * 11 10 9 13 13 C 1.36191 * 119.60888 * 180.02562 * 12 11 10 14 14 C 1.39243 * 120.93740 * 0.04385 * 13 12 11 15 15 C 1.36548 * 120.98190 * 359.97438 * 14 13 12 16 16 C 1.39793 * 119.73796 * 0.02562 * 15 14 13 17 17 C 1.46342 * 121.17083 * 179.97438 * 16 15 14 18 18 C 1.48094 * 120.34099 * 0.02562 * 17 16 15 19 19 C 1.39428 * 120.15903 * 245.02428 * 18 17 16 20 20 C 1.37972 * 119.91826 * 179.97438 * 19 18 17 21 21 C 1.38417 * 120.25316 * 0.02562 * 20 19 18 22 22 C 1.38190 * 120.32521 * 0.02562 * 21 20 19 23 23 C 1.38565 * 120.07597 * 359.97438 * 22 21 20 24 24 O 1.35829 * 120.12447 * 180.02562 * 23 22 21 25 25 C 1.36711 * 119.31223 * 180.27967 * 17 16 15 26 26 H 0.97005 * 120.00040 * 359.97438 * 1 2 3 27 27 H 1.08004 * 119.94015 * 359.97438 * 10 9 7 28 28 H 1.08004 * 120.19078 * 0.02562 * 12 11 10 29 29 H 1.07995 * 119.53044 * 180.02562 * 13 12 11 30 30 H 1.07999 * 119.50694 * 179.97438 * 14 13 12 31 31 H 1.08000 * 120.12763 * 180.02562 * 15 14 13 32 32 H 1.07996 * 120.04205 * 359.95647 * 19 18 17 33 33 H 1.07993 * 119.87334 * 179.97438 * 20 19 18 34 34 H 1.07996 * 119.83783 * 180.26936 * 21 20 19 35 35 H 1.08009 * 119.96335 * 180.02562 * 22 21 20 36 36 H 0.96704 * 114.00088 * 90.00597 * 24 23 22 37 37 H 1.08005 * 119.70174 * 179.74415 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0961 1.6965 1.2125 7 6 2.0080 -1.2117 0.0005 8 1 3.0473 -1.2350 0.2930 9 6 1.3550 -2.4041 -0.3814 10 6 0.2521 -2.3409 -1.2409 11 6 -0.4050 -3.5139 -1.6273 12 6 -1.5172 -3.4752 -2.4908 13 6 -2.1337 -4.6363 -2.8465 14 6 -1.6809 -5.8630 -2.3678 15 6 -0.6059 -5.9367 -1.5290 16 6 0.0529 -4.7663 -1.1416 17 6 1.2077 -4.8088 -0.2436 18 6 1.7044 -6.1039 0.2754 19 6 1.6383 -6.3835 1.6397 20 6 2.1020 -7.5918 2.1178 21 6 2.6335 -8.5282 1.2480 22 6 2.7050 -8.2614 -0.1060 23 6 2.2432 -7.0523 -0.6008 24 8 2.3125 -6.7892 -1.9315 25 6 1.8199 -3.6403 0.1153 26 1 -0.4850 0.8401 0.0004 27 1 -0.0928 -1.3846 -1.6058 28 1 -1.8789 -2.5302 -2.8686 29 1 -2.9861 -4.6052 -3.5089 30 1 -2.1874 -6.7695 -2.6645 31 1 -0.2661 -6.8956 -1.1664 32 1 1.2249 -5.6551 2.3215 33 1 2.0508 -7.8074 3.1748 34 1 2.9905 -9.4736 1.6290 35 1 3.1205 -8.9965 -0.7795 36 1 1.5300 -7.0650 -2.4283 37 1 2.6700 -3.6641 0.7810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241023291.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:10 Heat of formation + Delta-G solvation = 11.307409 kcal Electronic energy + Delta-G solvation = -21865.741271 eV Core-core repulsion = 18729.977372 eV Total energy + Delta-G solvation = -3135.763898 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.105 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -39.77907 -38.40459 -36.32085 -35.69775 -33.68893 -31.93160 -30.16179 -29.65375 -29.32960 -27.52213 -25.32407 -22.96122 -22.20565 -21.84563 -21.24358 -19.91700 -18.15499 -17.51970 -16.11411 -16.06652 -15.76525 -15.25786 -15.06111 -14.64181 -14.36712 -13.79498 -13.35729 -13.24295 -12.75124 -12.57209 -12.39746 -12.14901 -11.91000 -11.83061 -11.53764 -11.41428 -11.20932 -10.94455 -10.82218 -10.50915 -10.31578 -9.95795 -9.69843 -9.57682 -9.19442 -8.76535 -8.59681 -8.23030 -7.52229 -6.90162 -6.72977 -4.41737 1.36175 1.51888 1.78397 2.27381 2.95694 3.00861 3.04471 3.22647 3.82110 3.87281 4.00788 4.53461 4.75739 5.09764 5.14799 5.21483 5.52601 5.59087 5.63794 5.71189 5.76175 5.86635 6.05221 6.18743 6.20336 6.33383 6.50982 6.57715 6.62969 6.67224 6.76037 6.87765 6.96603 6.98589 7.06664 7.24776 7.35146 7.43015 7.49793 7.64915 7.87636 7.98051 8.04825 8.11913 8.48849 8.70835 8.77412 10.04173 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.015006 B = 0.005692 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.462765 B = 4918.101022 C = 6248.127250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.448 4.448 8 H 0.080 0.920 9 C 0.102 3.898 10 C -0.206 4.206 11 C 0.001 3.999 12 C -0.134 4.134 13 C -0.121 4.121 14 C -0.188 4.188 15 C -0.088 4.088 16 C -0.112 4.112 17 C -0.047 4.047 18 C -0.041 4.041 19 C -0.096 4.096 20 C -0.131 4.131 21 C -0.117 4.117 22 C -0.150 4.150 23 C 0.113 3.887 24 O -0.489 6.489 25 C -0.122 4.122 26 H 0.284 0.716 27 H 0.122 0.878 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.385 0.615 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.733 -9.916 0.435 9.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.145 4.145 3 Si 0.733 3.267 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.477 4.477 8 H 0.098 0.902 9 C 0.099 3.901 10 C -0.226 4.226 11 C 0.001 3.999 12 C -0.152 4.152 13 C -0.139 4.139 14 C -0.206 4.206 15 C -0.106 4.106 16 C -0.113 4.113 17 C -0.047 4.047 18 C -0.042 4.042 19 C -0.114 4.114 20 C -0.149 4.149 21 C -0.135 4.135 22 C -0.169 4.169 23 C 0.069 3.931 24 O -0.300 6.300 25 C -0.141 4.141 26 H 0.095 0.905 27 H 0.139 0.861 28 H 0.127 0.873 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.145 0.855 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.242 0.758 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.082 -9.505 0.601 9.585 hybrid contribution -0.171 0.603 -0.057 0.629 sum 0.911 -8.902 0.543 8.965 Atomic orbital electron populations 1.69830 1.07639 1.29661 1.33039 1.25919 0.94766 1.01437 0.92408 0.86344 0.80204 0.80007 0.80143 1.18640 1.20174 1.18893 1.19628 0.98231 0.91347 1.38467 0.90172 1.17379 0.92011 0.91315 0.89368 1.21159 1.01714 0.95878 1.03855 1.17913 0.94125 0.92959 0.94902 1.20928 0.96875 0.97308 1.00085 1.20470 0.99734 0.92951 1.00754 1.20321 0.99978 0.96770 1.03540 1.20548 0.96063 0.96333 0.97669 1.18410 0.97674 0.92678 1.02496 1.19003 0.96278 0.90565 0.98880 1.19336 0.97260 0.94469 0.93110 1.21271 0.98964 0.96916 0.94262 1.21050 1.00107 0.94140 0.99594 1.20947 1.00369 0.99373 0.92860 1.21312 1.02949 0.96382 0.96220 1.18564 0.98386 0.92184 0.84006 1.84797 1.44305 1.84897 1.15968 1.21134 1.00293 0.91979 1.00645 0.90508 0.86073 0.87301 0.88119 0.88232 0.88471 0.85487 0.86071 0.86157 0.85813 0.75826 0.88055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.46 11.00 55.55 0.61 -18.85 16 2 C 0.07 1.79 5.09 -17.35 -0.09 1.70 16 3 Si 0.91 18.01 29.60 -169.99 -5.03 12.98 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.45 -11.40 8.99 -37.82 -0.34 -11.74 16 8 H 0.08 1.94 7.91 -52.49 -0.42 1.53 16 9 C 0.10 2.62 5.55 -107.03 -0.59 2.03 16 10 C -0.21 -5.29 8.39 -38.31 -0.32 -5.61 16 11 C 0.00 0.03 5.74 -106.88 -0.61 -0.58 16 12 C -0.13 -2.82 9.78 -39.33 -0.38 -3.20 16 13 C -0.12 -2.25 9.95 -39.94 -0.40 -2.64 16 14 C -0.19 -3.36 9.96 -39.82 -0.40 -3.76 16 15 C -0.09 -1.68 7.95 -39.61 -0.31 -1.99 16 16 C -0.11 -2.48 5.73 -104.65 -0.60 -3.08 16 17 C -0.05 -1.03 5.04 -103.15 -0.52 -1.55 16 18 C -0.04 -0.76 4.55 -104.78 -0.48 -1.24 16 19 C -0.10 -1.56 9.73 -39.24 -0.38 -1.94 16 20 C -0.13 -1.75 10.03 -39.61 -0.40 -2.15 16 21 C -0.12 -1.48 10.03 -39.53 -0.40 -1.88 16 22 C -0.15 -2.10 9.98 -39.48 -0.39 -2.50 16 23 C 0.11 1.92 5.64 -38.83 -0.22 1.70 16 24 O -0.49 -8.45 12.56 -19.20 -0.24 -8.69 16 25 C -0.12 -2.88 9.31 -39.05 -0.36 -3.24 16 26 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 27 H 0.12 3.22 6.15 -52.48 -0.32 2.90 16 28 H 0.11 2.16 8.06 -52.48 -0.42 1.73 16 29 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 30 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.10 1.66 6.19 -52.49 -0.33 1.34 16 32 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 33 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 36 H 0.39 5.49 7.55 45.56 0.34 5.84 16 37 H 0.10 2.25 8.06 -52.48 -0.42 1.83 16 LS Contribution 316.47 15.07 4.77 4.77 Total: -1.00 -27.88 316.47 -10.33 -38.20 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -3.24 Total: 13.25 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: -7.20 Total: -41.67 kcal Atomic # 7 Polarization: -19.46 SS G_CDS: 0.61 Total: -18.85 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.24 Total: -8.69 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.88 -10.33 -38.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241023291.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.511 kcal (2) G-P(sol) polarization free energy of solvation -27.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds