Wall clock time and date at job start Tue Mar 31 2020 08:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86805 * 119.99652 * 2 1 4 4 H 1.48499 * 109.46909 * 239.99708 * 3 2 1 5 5 H 1.48500 * 109.47398 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47141 * 120.00252 * 3 2 1 7 7 C 1.39917 * 120.00390 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00344 * 198.22013 * 7 2 1 9 9 C 1.41215 * 119.99588 * 18.22384 * 7 2 1 10 10 C 1.39978 * 119.49018 * 25.66158 * 9 7 2 11 11 C 1.39890 * 120.12012 * 180.02562 * 10 9 7 12 12 C 1.40860 * 121.13932 * 179.97438 * 11 10 9 13 13 C 1.36191 * 119.60888 * 180.02562 * 12 11 10 14 14 C 1.39243 * 120.93740 * 0.04385 * 13 12 11 15 15 C 1.36548 * 120.98190 * 359.97438 * 14 13 12 16 16 C 1.39793 * 119.73796 * 0.02562 * 15 14 13 17 17 C 1.46342 * 121.17083 * 179.97438 * 16 15 14 18 18 C 1.48094 * 120.34099 * 0.02562 * 17 16 15 19 19 C 1.39428 * 120.15903 * 245.02428 * 18 17 16 20 20 C 1.37972 * 119.91826 * 179.97438 * 19 18 17 21 21 C 1.38417 * 120.25316 * 0.02562 * 20 19 18 22 22 C 1.38190 * 120.32521 * 0.02562 * 21 20 19 23 23 C 1.38565 * 120.07597 * 359.97438 * 22 21 20 24 24 O 1.35829 * 120.12447 * 180.02562 * 23 22 21 25 25 C 1.36711 * 119.31223 * 180.27967 * 17 16 15 26 26 H 0.97005 * 120.00040 * 359.97438 * 1 2 3 27 27 H 1.08004 * 119.94015 * 359.97438 * 10 9 7 28 28 H 1.08004 * 120.19078 * 0.02562 * 12 11 10 29 29 H 1.07995 * 119.53044 * 180.02562 * 13 12 11 30 30 H 1.07999 * 119.50694 * 179.97438 * 14 13 12 31 31 H 1.08000 * 120.12763 * 180.02562 * 15 14 13 32 32 H 1.07996 * 120.04205 * 359.95647 * 19 18 17 33 33 H 1.07993 * 119.87334 * 179.97438 * 20 19 18 34 34 H 1.07996 * 119.83783 * 180.26936 * 21 20 19 35 35 H 1.08009 * 119.96335 * 180.02562 * 22 21 20 36 36 H 0.96704 * 114.00088 * 90.00597 * 24 23 22 37 37 H 1.08005 * 119.70174 * 179.74415 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0961 1.6965 1.2125 7 6 2.0080 -1.2117 0.0005 8 1 3.0473 -1.2350 0.2930 9 6 1.3550 -2.4041 -0.3814 10 6 0.2521 -2.3409 -1.2409 11 6 -0.4050 -3.5139 -1.6273 12 6 -1.5172 -3.4752 -2.4908 13 6 -2.1337 -4.6363 -2.8465 14 6 -1.6809 -5.8630 -2.3678 15 6 -0.6059 -5.9367 -1.5290 16 6 0.0529 -4.7663 -1.1416 17 6 1.2077 -4.8088 -0.2436 18 6 1.7044 -6.1039 0.2754 19 6 1.6383 -6.3835 1.6397 20 6 2.1020 -7.5918 2.1178 21 6 2.6335 -8.5282 1.2480 22 6 2.7050 -8.2614 -0.1060 23 6 2.2432 -7.0523 -0.6008 24 8 2.3125 -6.7892 -1.9315 25 6 1.8199 -3.6403 0.1153 26 1 -0.4850 0.8401 0.0004 27 1 -0.0928 -1.3846 -1.6058 28 1 -1.8789 -2.5302 -2.8686 29 1 -2.9861 -4.6052 -3.5089 30 1 -2.1874 -6.7695 -2.6645 31 1 -0.2661 -6.8956 -1.1664 32 1 1.2249 -5.6551 2.3215 33 1 2.0508 -7.8074 3.1748 34 1 2.9905 -9.4736 1.6290 35 1 3.1205 -8.9965 -0.7795 36 1 1.5300 -7.0650 -2.4283 37 1 2.6700 -3.6641 0.7810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241023291.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:59 Heat of formation + Delta-G solvation = -2.573074 kcal Electronic energy + Delta-G solvation = -21866.343174 eV Core-core repulsion = 18729.977372 eV Total energy + Delta-G solvation = -3136.365801 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.105 amu Computer time = 16.63 seconds Orbital eigenvalues (eV) -41.16752 -39.90284 -37.64017 -37.31745 -35.36649 -33.53403 -31.55869 -31.28617 -30.64239 -29.10051 -27.10112 -24.42016 -23.46646 -23.37247 -22.87462 -21.47607 -19.58876 -19.03661 -17.83229 -17.63178 -17.03269 -16.71509 -16.46947 -16.10946 -15.84207 -15.15086 -14.87969 -14.66535 -14.24862 -14.19431 -14.04388 -13.74098 -13.30517 -13.16322 -12.99999 -12.84688 -12.66242 -12.52679 -12.47818 -12.08456 -11.78979 -11.55772 -11.37244 -11.16382 -10.93039 -10.40181 -9.80023 -9.48300 -9.26330 -8.69955 -8.43928 -6.33150 -0.09452 0.35449 0.40844 0.58444 1.33219 1.38137 1.47134 1.53754 2.15596 2.28481 2.72912 3.00781 3.34920 3.71891 3.76741 4.07174 4.07703 4.19172 4.27521 4.32837 4.50961 4.58859 4.63181 4.72136 4.81875 4.92067 4.95045 5.04415 5.15357 5.20134 5.29492 5.40452 5.51044 5.56844 5.59741 5.69462 5.72601 5.84221 5.94079 5.96298 6.05647 6.23272 6.42229 6.63274 6.81367 6.84893 6.92920 8.27155 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.015006 B = 0.005692 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.462765 B = 4918.101022 C = 6248.127250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.257 1.257 7 C -0.490 4.490 8 H 0.077 0.923 9 C 0.077 3.923 10 C -0.236 4.236 11 C -0.024 4.024 12 C -0.159 4.159 13 C -0.107 4.107 14 C -0.172 4.172 15 C -0.087 4.087 16 C -0.131 4.131 17 C -0.031 4.031 18 C -0.077 4.077 19 C -0.110 4.110 20 C -0.123 4.123 21 C -0.100 4.100 22 C -0.146 4.146 23 C 0.100 3.900 24 O -0.506 6.506 25 C -0.158 4.158 26 H 0.289 0.711 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.140 0.860 30 H 0.145 0.855 31 H 0.122 0.878 32 H 0.116 0.884 33 H 0.154 0.846 34 H 0.164 0.836 35 H 0.151 0.849 36 H 0.395 0.605 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.428 -13.541 0.393 13.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.181 4.181 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.519 4.519 8 H 0.095 0.905 9 C 0.075 3.925 10 C -0.257 4.257 11 C -0.024 4.024 12 C -0.178 4.178 13 C -0.125 4.125 14 C -0.190 4.190 15 C -0.105 4.105 16 C -0.131 4.131 17 C -0.031 4.031 18 C -0.078 4.078 19 C -0.128 4.128 20 C -0.141 4.141 21 C -0.118 4.118 22 C -0.164 4.164 23 C 0.055 3.945 24 O -0.318 6.318 25 C -0.176 4.176 26 H 0.100 0.900 27 H 0.117 0.883 28 H 0.127 0.873 29 H 0.158 0.842 30 H 0.163 0.837 31 H 0.140 0.860 32 H 0.134 0.866 33 H 0.172 0.828 34 H 0.181 0.819 35 H 0.169 0.831 36 H 0.253 0.747 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.766 -13.152 0.556 13.186 hybrid contribution -0.199 1.388 -0.099 1.406 sum 0.567 -11.764 0.457 11.786 Atomic orbital electron populations 1.69903 1.09109 1.30720 1.34241 1.26760 0.95467 1.04518 0.91327 0.85260 0.78848 0.75555 0.80134 1.18636 1.18964 1.18070 1.19850 0.98450 0.92626 1.40938 0.90457 1.17708 0.92534 0.92509 0.89772 1.21061 1.03065 0.95935 1.05592 1.18237 0.95158 0.93122 0.95887 1.21079 0.97019 0.98890 1.00770 1.20936 0.99749 0.92054 0.99721 1.20873 0.98694 0.98160 1.01261 1.20786 0.96050 0.96063 0.97554 1.18787 0.98221 0.93333 1.02782 1.19380 0.95014 0.91742 0.96977 1.19307 1.00274 0.93645 0.94544 1.21326 0.99901 0.98358 0.93246 1.21408 0.98500 0.92656 1.01510 1.21459 0.97952 1.00436 0.91955 1.21616 1.01826 0.95453 0.97478 1.18736 0.99242 0.93000 0.83492 1.84774 1.45099 1.85401 1.16548 1.21173 1.01519 0.92465 1.02459 0.90006 0.88308 0.87266 0.84241 0.83735 0.86040 0.86555 0.82832 0.81872 0.83138 0.74722 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.78 11.00 21.82 0.24 -43.54 16 2 C 0.04 1.81 5.09 85.25 0.43 2.25 16 3 Si 0.98 38.88 29.60 68.60 2.03 40.91 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.27 -9.88 7.11 99.48 0.71 -9.18 16 6 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 7 C -0.49 -27.13 8.99 23.41 0.21 -26.92 16 8 H 0.08 4.10 7.91 -2.91 -0.02 4.08 16 9 C 0.08 4.34 5.55 -21.42 -0.12 4.22 16 10 C -0.24 -13.22 8.39 23.09 0.19 -13.02 16 11 C -0.02 -1.19 5.74 -21.33 -0.12 -1.31 16 12 C -0.16 -6.82 9.78 22.43 0.22 -6.60 16 13 C -0.11 -3.68 9.95 22.03 0.22 -3.46 16 14 C -0.17 -5.50 9.96 22.12 0.22 -5.28 16 15 C -0.09 -3.14 7.95 22.25 0.18 -2.96 16 16 C -0.13 -5.93 5.73 -19.88 -0.11 -6.04 16 17 C -0.03 -1.41 5.04 -18.91 -0.10 -1.51 16 18 C -0.08 -2.86 4.55 -19.97 -0.09 -2.95 16 19 C -0.11 -3.51 9.73 22.49 0.22 -3.29 16 20 C -0.12 -2.86 10.03 22.25 0.22 -2.64 16 21 C -0.10 -2.03 10.03 22.30 0.22 -1.81 16 22 C -0.15 -3.51 9.98 22.34 0.22 -3.29 16 23 C 0.10 3.22 5.64 22.75 0.13 3.35 16 24 O -0.51 -17.00 12.56 -91.63 -1.15 -18.15 16 25 C -0.16 -8.07 9.31 22.62 0.21 -7.85 16 26 H 0.29 14.04 8.30 -92.70 -0.77 13.27 16 27 H 0.10 5.80 6.15 -2.91 -0.02 5.78 16 28 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 29 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 30 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 31 H 0.12 3.80 6.19 -2.91 -0.02 3.79 16 32 H 0.12 3.83 8.06 -2.91 -0.02 3.81 16 33 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 34 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 35 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 36 H 0.39 10.66 7.55 -74.05 -0.56 10.10 16 37 H 0.10 4.89 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -67.05 316.47 4.03 -63.02 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: 0.55 Total: 36.88 kcal Atomic # 6 Polarization: -81.49 SS G_CDS: 2.36 Total: -79.13 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 0.24 Total: -43.54 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -1.15 Total: -18.15 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -67.05 4.03 -63.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241023291.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.449 kcal (2) G-P(sol) polarization free energy of solvation -67.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.63 seconds