Wall clock time and date at job start Tue Mar 31 2020 06:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39601 * 120.45409 * 37.49178 * 3 2 1 5 5 C 1.37681 * 120.19206 * 179.97438 * 4 3 2 6 6 C 1.39863 * 121.16615 * 0.02853 * 5 4 3 7 7 C 1.48236 * 119.53890 * 179.97438 * 6 5 4 8 8 C 1.40576 * 119.88374 * 179.72283 * 7 6 5 9 9 N 1.30606 * 122.42590 * 179.72467 * 8 7 6 10 10 C 1.34320 * 121.52370 * 0.55769 * 9 8 7 11 11 N 1.32025 * 134.15666 * 179.74584 * 10 9 8 12 12 N 1.39884 * 109.13100 * 179.97438 * 11 10 9 13 13 H 0.97006 * 124.99798 * 180.02562 * 12 11 10 14 14 C 1.33846 * 110.01551 * 0.02562 * 12 11 10 15 15 C 1.38402 * 107.77530 * 359.97438 * 14 12 11 16 16 C 1.38449 * 119.88504 * 359.97438 * 7 6 5 17 17 C 1.38665 * 120.91853 * 359.73320 * 6 5 4 18 18 C 1.40579 * 119.72886 * 0.49593 * 17 6 5 19 19 C 1.40853 * 120.54666 * 179.78968 * 18 17 6 20 20 H 1.07995 * 119.99349 * 155.61411 * 19 18 17 21 21 C 1.40224 * 120.00195 * 335.34115 * 19 18 17 22 22 N 1.30661 * 120.00118 * 342.71004 * 21 19 18 23 23 Si 1.86804 * 119.99847 * 162.71500 * 21 19 18 24 24 H 1.48498 * 109.46861 * 59.99916 * 23 21 19 25 25 H 1.48499 * 109.46670 * 179.97438 * 23 21 19 26 26 H 1.48489 * 109.46864 * 299.99491 * 23 21 19 27 27 H 1.08001 * 119.90305 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.41815 * 179.97438 * 5 4 3 29 29 H 1.08009 * 118.78649 * 359.97438 * 8 7 6 30 30 H 1.07998 * 126.11822 * 180.02562 * 14 12 11 31 31 H 1.07999 * 121.04270 * 0.02562 * 16 7 6 32 32 H 1.08001 * 120.13130 * 180.29049 * 17 6 5 33 33 H 0.96998 * 120.00228 * 185.00284 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2760 -0.9539 -0.7325 5 6 4.6528 -0.9479 -0.7290 6 6 5.3707 0.0045 0.0014 7 6 6.8527 -0.0228 -0.0201 8 6 7.5815 0.9346 0.7067 9 7 8.8872 0.9535 0.7271 10 6 9.6133 0.0570 0.0391 11 7 10.9074 -0.1505 -0.1204 12 7 11.0947 -1.2507 -0.9638 13 1 11.9567 -1.6039 -1.2344 14 6 9.9098 -1.7446 -1.3426 15 6 8.9229 -0.9748 -0.7519 16 6 7.5141 -0.9880 -0.7601 17 6 4.7155 0.9771 0.7414 18 6 3.3102 1.0034 0.7689 19 6 2.6270 1.9809 1.5184 20 1 1.6186 2.2594 1.2505 21 6 3.2542 2.5881 2.6158 22 7 4.3091 2.0356 3.1535 23 14 2.5814 4.1870 3.3090 24 1 1.1832 3.9795 3.7643 25 1 3.4169 4.6185 4.4583 26 1 2.6089 5.2334 2.2558 27 1 2.7422 -1.6991 -1.3034 28 1 5.1879 -1.6925 -1.2998 29 1 7.0417 1.6798 1.2724 30 1 9.7519 -2.5927 -1.9923 31 1 6.9673 -1.7271 -1.3269 32 1 5.2825 1.7093 1.2971 33 1 4.6997 2.4154 3.9561 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241423745.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:52 Heat of formation + Delta-G solvation = 148.470880 kcal Electronic energy + Delta-G solvation = -20754.112380 eV Core-core repulsion = 17553.048744 eV Total energy + Delta-G solvation = -3201.063636 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.086 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -41.30873 -38.55130 -37.20823 -35.16122 -34.26884 -32.84234 -31.25891 -30.57206 -29.97766 -27.97008 -26.05875 -24.66739 -23.22629 -21.53599 -20.81093 -20.33973 -18.30426 -17.77418 -17.60110 -16.70990 -15.75691 -15.41846 -15.15087 -14.98605 -13.94365 -13.57993 -13.53431 -13.05202 -12.88183 -12.85746 -12.69509 -12.54983 -11.82136 -11.77129 -11.58401 -11.37204 -11.25525 -11.15220 -11.00156 -10.70947 -10.33917 -10.12068 -9.84177 -9.54279 -8.93604 -8.86534 -8.33986 -7.80324 -7.21624 -6.96403 -4.75661 0.51327 1.48376 2.22629 2.52662 2.61660 2.65334 2.93131 2.95413 3.08418 3.68621 3.90355 3.95033 4.08295 4.41012 4.41970 4.43172 5.02815 5.12578 5.24182 5.34720 5.39786 5.45198 5.63028 5.81045 6.06711 6.19069 6.37805 6.44591 6.67488 6.77940 6.82532 6.94229 6.99598 7.16563 7.42827 7.50764 7.62308 7.70691 7.82428 8.14906 8.29769 8.39871 8.49860 8.81364 9.73145 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.017498 B = 0.004640 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.802443 B = 6033.164626 C = 7552.858260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C 0.300 3.700 3 C -0.187 4.187 4 C -0.025 4.025 5 C -0.241 4.241 6 C -0.007 4.007 7 C -0.112 4.112 8 C 0.215 3.785 9 N -0.483 5.483 10 C 0.264 3.736 11 N -0.301 5.301 12 N -0.420 5.420 13 H 0.444 0.556 14 C 0.091 3.909 15 C -0.251 4.251 16 C -0.006 4.006 17 C -0.147 4.147 18 C 0.150 3.850 19 C -0.428 4.428 20 H 0.087 0.913 21 C 0.077 3.923 22 N -0.764 5.764 23 Si 0.915 3.085 24 H -0.262 1.262 25 H -0.272 1.272 26 H -0.257 1.257 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.174 0.826 30 H 0.190 0.810 31 H 0.139 0.861 32 H 0.133 0.867 33 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.581 -5.231 -5.810 13.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 C -0.010 4.010 3 C -0.193 4.193 4 C -0.046 4.046 5 C -0.260 4.260 6 C -0.009 4.009 7 C -0.116 4.116 8 C 0.030 3.970 9 N -0.195 5.195 10 C 0.003 3.997 11 N -0.133 5.133 12 N -0.120 5.120 13 H 0.289 0.711 14 C -0.069 4.069 15 C -0.263 4.263 16 C -0.034 4.034 17 C -0.166 4.166 18 C 0.145 3.855 19 C -0.455 4.455 20 H 0.105 0.895 21 C -0.146 4.146 22 N -0.386 5.386 23 Si 0.738 3.262 24 H -0.186 1.186 25 H -0.197 1.197 26 H -0.181 1.181 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.191 0.809 30 H 0.207 0.793 31 H 0.157 0.843 32 H 0.150 0.850 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.903 -4.168 -4.857 13.515 hybrid contribution -0.583 -0.613 -0.427 0.948 sum 11.320 -4.781 -5.284 13.377 Atomic orbital electron populations 1.81022 1.12799 1.11730 1.13476 1.25817 0.92758 0.91336 0.91078 1.16973 0.83203 1.04045 1.15087 1.20352 0.93558 0.95160 0.95533 1.20067 0.93026 1.03867 1.09077 1.18294 0.88697 0.96433 0.97488 1.19705 0.94761 0.97186 0.99963 1.23422 0.87893 0.94536 0.91129 1.67449 1.07225 1.23634 1.21167 1.21465 0.91000 0.92606 0.94661 1.77683 1.14236 1.05016 1.16345 1.46331 1.08291 1.22690 1.34721 0.71115 1.22681 0.85419 0.99215 0.99554 1.20408 0.95453 1.02343 1.08057 1.21018 0.90087 0.96753 0.95502 1.21402 0.93833 0.99950 1.01418 1.18304 0.91155 0.88209 0.87881 1.19774 1.01123 1.15436 1.09153 0.89509 1.26102 0.93599 0.98522 0.96404 1.69650 1.16664 1.36316 1.15960 0.86198 0.80121 0.80788 0.79056 1.18593 1.19670 1.18105 0.88229 0.88272 0.80877 0.79312 0.84346 0.84973 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.08 18.54 41.84 0.78 -11.30 16 2 C 0.30 6.84 14.28 -22.47 -0.32 6.52 16 3 C -0.19 -4.11 5.95 -104.11 -0.62 -4.73 16 4 C -0.03 -0.48 9.74 -39.28 -0.38 -0.87 16 5 C -0.24 -4.34 9.36 -39.18 -0.37 -4.71 16 6 C -0.01 -0.14 5.86 -105.02 -0.62 -0.76 16 7 C -0.11 -1.94 5.88 -104.83 -0.62 -2.55 16 8 C 0.22 3.81 10.51 -17.19 -0.18 3.63 16 9 N -0.48 -9.02 10.42 -11.08 -0.12 -9.14 16 10 C 0.26 4.59 8.60 -156.41 -1.35 3.24 16 11 N -0.30 -4.70 12.69 31.96 0.41 -4.29 16 12 N -0.42 -4.14 7.17 30.84 0.22 -3.92 16 13 H 0.44 2.32 8.96 -182.76 -1.64 0.68 16 14 C 0.09 0.86 12.09 -16.61 -0.20 0.66 16 15 C -0.25 -3.57 6.33 -105.19 -0.67 -4.23 16 16 C -0.01 -0.08 9.57 -38.50 -0.37 -0.45 16 17 C -0.15 -3.13 8.06 -38.54 -0.31 -3.44 16 18 C 0.15 3.45 5.73 -104.68 -0.60 2.85 16 19 C -0.43 -10.05 8.58 -37.85 -0.32 -10.37 16 20 H 0.09 2.08 7.36 -52.49 -0.39 1.69 16 21 C 0.08 1.68 5.16 -17.30 -0.09 1.59 16 22 N -0.76 -16.67 10.94 55.56 0.61 -16.07 16 23 Si 0.92 16.78 29.60 -169.99 -5.03 11.75 16 24 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 25 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 26 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 27 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 28 H 0.10 1.49 6.10 -52.49 -0.32 1.17 16 29 H 0.17 2.98 6.05 -52.48 -0.32 2.66 16 30 H 0.19 0.82 8.06 -52.49 -0.42 0.40 16 31 H 0.14 1.67 6.16 -52.49 -0.32 1.35 16 32 H 0.13 2.80 4.19 -52.49 -0.22 2.58 16 33 H 0.29 5.82 8.30 -40.82 -0.34 5.48 16 LS Contribution 299.61 15.07 4.52 4.52 Total: -1.00 -29.21 299.61 -8.81 -38.03 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -3.19 Total: 4.04 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -7.01 Total: -13.60 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 1.89 Total: -44.73 kcal Atomic # 14 Polarization: 16.78 SS G_CDS: -5.03 Total: 11.75 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.21 -8.81 -38.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241423745.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.498 kcal (2) G-P(sol) polarization free energy of solvation -29.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds