Wall clock time and date at job start Tue Mar 31 2020 06:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39601 * 120.45409 * 37.49178 * 3 2 1 5 5 C 1.37681 * 120.19206 * 179.97438 * 4 3 2 6 6 C 1.39863 * 121.16615 * 0.02853 * 5 4 3 7 7 C 1.48236 * 119.53890 * 179.97438 * 6 5 4 8 8 C 1.40576 * 119.88374 * 179.72283 * 7 6 5 9 9 N 1.30606 * 122.42590 * 179.72467 * 8 7 6 10 10 C 1.34320 * 121.52370 * 0.55769 * 9 8 7 11 11 N 1.32025 * 134.15666 * 179.74584 * 10 9 8 12 12 N 1.39884 * 109.13100 * 179.97438 * 11 10 9 13 13 H 0.97006 * 124.99798 * 180.02562 * 12 11 10 14 14 C 1.33846 * 110.01551 * 0.02562 * 12 11 10 15 15 C 1.38402 * 107.77530 * 359.97438 * 14 12 11 16 16 C 1.38449 * 119.88504 * 359.97438 * 7 6 5 17 17 C 1.38665 * 120.91853 * 359.73320 * 6 5 4 18 18 C 1.40579 * 119.72886 * 0.49593 * 17 6 5 19 19 C 1.40853 * 120.54666 * 179.78968 * 18 17 6 20 20 H 1.07995 * 119.99349 * 155.61411 * 19 18 17 21 21 C 1.40224 * 120.00195 * 335.34115 * 19 18 17 22 22 N 1.30661 * 120.00118 * 342.71004 * 21 19 18 23 23 Si 1.86804 * 119.99847 * 162.71500 * 21 19 18 24 24 H 1.48498 * 109.46861 * 59.99916 * 23 21 19 25 25 H 1.48499 * 109.46670 * 179.97438 * 23 21 19 26 26 H 1.48489 * 109.46864 * 299.99491 * 23 21 19 27 27 H 1.08001 * 119.90305 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.41815 * 179.97438 * 5 4 3 29 29 H 1.08009 * 118.78649 * 359.97438 * 8 7 6 30 30 H 1.07998 * 126.11822 * 180.02562 * 14 12 11 31 31 H 1.07999 * 121.04270 * 0.02562 * 16 7 6 32 32 H 1.08001 * 120.13130 * 180.29049 * 17 6 5 33 33 H 0.96998 * 120.00228 * 185.00284 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2760 -0.9539 -0.7325 5 6 4.6528 -0.9479 -0.7290 6 6 5.3707 0.0045 0.0014 7 6 6.8527 -0.0228 -0.0201 8 6 7.5815 0.9346 0.7067 9 7 8.8872 0.9535 0.7271 10 6 9.6133 0.0570 0.0391 11 7 10.9074 -0.1505 -0.1204 12 7 11.0947 -1.2507 -0.9638 13 1 11.9567 -1.6039 -1.2344 14 6 9.9098 -1.7446 -1.3426 15 6 8.9229 -0.9748 -0.7519 16 6 7.5141 -0.9880 -0.7601 17 6 4.7155 0.9771 0.7414 18 6 3.3102 1.0034 0.7689 19 6 2.6270 1.9809 1.5184 20 1 1.6186 2.2594 1.2505 21 6 3.2542 2.5881 2.6158 22 7 4.3091 2.0356 3.1535 23 14 2.5814 4.1870 3.3090 24 1 1.1832 3.9795 3.7643 25 1 3.4169 4.6185 4.4583 26 1 2.6089 5.2334 2.2558 27 1 2.7422 -1.6991 -1.3034 28 1 5.1879 -1.6925 -1.2998 29 1 7.0417 1.6798 1.2724 30 1 9.7519 -2.5927 -1.9923 31 1 6.9673 -1.7271 -1.3269 32 1 5.2825 1.7093 1.2971 33 1 4.6997 2.4154 3.9561 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241423745.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:49 Heat of formation + Delta-G solvation = 131.638627 kcal Electronic energy + Delta-G solvation = -20754.842281 eV Core-core repulsion = 17553.048744 eV Total energy + Delta-G solvation = -3201.793538 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.086 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.35088 -39.89802 -38.59998 -36.90267 -35.84238 -34.15343 -32.43455 -31.81931 -31.49043 -29.25123 -27.62750 -25.88425 -24.59486 -22.92546 -22.22542 -21.44286 -19.54058 -19.13946 -18.95578 -18.05431 -17.20299 -16.71234 -16.32697 -16.19608 -15.46467 -15.03668 -14.72261 -14.49523 -14.41769 -14.27089 -14.04976 -13.83655 -13.39143 -13.29112 -13.25505 -12.97582 -12.74442 -12.62461 -12.15308 -12.10953 -11.71275 -11.58499 -11.38517 -11.11792 -10.07346 -10.06701 -9.64753 -9.40326 -8.80311 -8.33402 -6.46467 -0.51127 0.08517 0.92511 1.10881 1.39503 1.46264 1.49140 1.59440 1.72830 2.11212 2.16289 2.43730 2.72608 3.02428 3.04407 3.48900 3.70841 3.79996 4.00474 4.07300 4.12526 4.38109 4.42358 4.51298 4.76728 4.84425 5.02874 5.17577 5.22551 5.30379 5.35134 5.57347 5.67835 5.89309 6.03271 6.17178 6.23718 6.25723 6.44785 6.53184 6.73684 6.87074 7.04950 7.11231 8.14087 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.017498 B = 0.004640 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.802443 B = 6033.164626 C = 7552.858260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C 0.305 3.695 3 C -0.213 4.213 4 C -0.023 4.023 5 C -0.228 4.228 6 C 0.008 3.992 7 C -0.156 4.156 8 C 0.206 3.794 9 N -0.523 5.523 10 C 0.235 3.765 11 N -0.349 5.349 12 N -0.396 5.396 13 H 0.467 0.533 14 C 0.154 3.846 15 C -0.286 4.286 16 C 0.037 3.963 17 C -0.176 4.176 18 C 0.131 3.869 19 C -0.468 4.468 20 H 0.068 0.932 21 C 0.049 3.951 22 N -0.785 5.785 23 Si 0.971 3.029 24 H -0.269 1.269 25 H -0.258 1.258 26 H -0.257 1.257 27 H 0.130 0.870 28 H 0.145 0.855 29 H 0.158 0.842 30 H 0.260 0.740 31 H 0.177 0.823 32 H 0.122 0.878 33 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.040 -8.413 -8.329 18.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.217 5.217 2 C -0.003 4.003 3 C -0.219 4.219 4 C -0.044 4.044 5 C -0.247 4.247 6 C 0.007 3.993 7 C -0.160 4.160 8 C 0.024 3.976 9 N -0.236 5.236 10 C -0.026 4.026 11 N -0.182 5.182 12 N -0.097 5.097 13 H 0.316 0.684 14 C -0.009 4.009 15 C -0.298 4.298 16 C 0.010 3.990 17 C -0.196 4.196 18 C 0.126 3.874 19 C -0.496 4.496 20 H 0.086 0.914 21 C -0.172 4.172 22 N -0.408 5.408 23 Si 0.792 3.208 24 H -0.194 1.194 25 H -0.182 1.182 26 H -0.181 1.181 27 H 0.147 0.853 28 H 0.162 0.838 29 H 0.175 0.825 30 H 0.276 0.724 31 H 0.195 0.805 32 H 0.140 0.860 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 14.400 -7.347 -7.373 17.768 hybrid contribution -0.982 0.097 0.132 0.995 sum 13.418 -7.250 -7.240 16.883 Atomic orbital electron populations 1.80993 1.13384 1.12708 1.14597 1.26097 0.93054 0.90679 0.90446 1.17256 0.82813 1.05320 1.16494 1.20708 0.94247 0.94642 0.94758 1.20543 0.92697 1.03596 1.07837 1.18537 0.90068 0.95151 0.95588 1.19509 0.93515 0.99612 1.03394 1.23194 0.87933 0.94898 0.91623 1.67292 1.07597 1.25624 1.23107 1.21723 0.92012 0.93456 0.95364 1.77628 1.13780 1.07842 1.18978 1.46431 1.10056 1.20764 1.32497 0.68368 1.23710 0.83211 0.97927 0.96028 1.20736 0.96046 1.03293 1.09720 1.21390 0.90531 0.94841 0.92256 1.21356 0.93225 1.01545 1.03436 1.18586 0.92140 0.88523 0.88153 1.19809 1.00896 1.17784 1.11102 0.91394 1.26643 0.93831 1.00551 0.96158 1.69673 1.17409 1.37315 1.16445 0.85389 0.79123 0.77588 0.78715 1.19381 1.18153 1.18120 0.85263 0.83780 0.82487 0.72447 0.80547 0.86025 0.88907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 -26.01 18.54 19.00 0.35 -25.65 16 2 C 0.31 14.32 14.28 88.33 1.26 15.58 16 3 C -0.21 -9.49 5.95 -19.53 -0.12 -9.60 16 4 C -0.02 -0.84 9.74 22.47 0.22 -0.62 16 5 C -0.23 -7.47 9.36 22.53 0.21 -7.26 16 6 C 0.01 0.31 5.86 -20.12 -0.12 0.20 16 7 C -0.16 -5.22 5.88 -20.00 -0.12 -5.34 16 8 C 0.21 7.64 10.51 85.45 0.90 8.54 16 9 N -0.52 -20.18 10.42 -188.96 -1.97 -22.15 16 10 C 0.24 7.89 8.60 136.85 1.18 9.07 16 11 N -0.35 -10.22 12.69 -52.80 -0.67 -10.89 16 12 N -0.40 -5.80 7.17 -56.33 -0.40 -6.21 16 13 H 0.47 2.27 8.96 -213.45 -1.91 0.36 16 14 C 0.15 1.82 12.09 84.43 1.02 2.84 16 15 C -0.29 -6.88 6.33 -20.23 -0.13 -7.01 16 16 C 0.04 0.93 9.57 22.97 0.22 1.15 16 17 C -0.18 -7.86 8.06 22.94 0.18 -7.68 16 18 C 0.13 6.34 5.73 -19.90 -0.11 6.22 16 19 C -0.47 -23.50 8.58 23.39 0.20 -23.30 16 20 H 0.07 3.52 7.36 -2.91 -0.02 3.50 16 21 C 0.05 2.26 5.16 85.35 0.44 2.70 16 22 N -0.79 -36.36 10.94 21.87 0.24 -36.12 16 23 Si 0.97 36.13 29.60 68.60 2.03 38.16 16 24 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 25 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 26 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 27 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 28 H 0.14 3.39 6.10 -2.91 -0.02 3.37 16 29 H 0.16 6.03 6.05 -2.91 -0.02 6.02 16 30 H 0.26 -0.53 8.06 -2.91 -0.02 -0.55 16 31 H 0.18 2.94 6.16 -2.91 -0.02 2.92 16 32 H 0.12 5.59 4.19 -2.91 -0.01 5.58 16 33 H 0.30 12.54 8.30 -92.71 -0.77 11.77 16 Total: -1.00 -71.09 299.61 4.12 -66.97 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -0.70 Total: 10.41 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: 5.24 Total: -14.52 kcal Atomic # 7 Polarization: -98.57 SS G_CDS: -2.45 Total: -101.02 kcal Atomic # 14 Polarization: 36.13 SS G_CDS: 2.03 Total: 38.16 kcal Total: -71.09 4.12 -66.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241423745.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.607 kcal (2) G-P(sol) polarization free energy of solvation -71.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds