Wall clock time and date at job start Tue Mar 31 2020 06:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39023 * 120.56077 * 66.72765 * 3 2 1 5 5 C 1.39488 * 119.79271 * 180.27995 * 4 3 2 6 6 C 1.47833 * 119.50407 * 179.71301 * 5 4 3 7 7 C 1.40758 * 119.92296 * 359.74521 * 6 5 4 8 8 N 1.30529 * 122.38688 * 179.66152 * 7 6 5 9 9 C 1.34368 * 121.57040 * 0.65031 * 8 7 6 10 10 N 1.31981 * 134.09933 * 179.68677 * 9 8 7 11 11 N 1.39880 * 109.17486 * 179.97438 * 10 9 8 12 12 H 0.97006 * 124.99223 * 180.02562 * 11 10 9 13 13 C 1.33858 * 110.01997 * 359.97438 * 11 10 9 14 14 C 1.38541 * 107.73913 * 359.97438 * 13 11 10 15 15 C 1.38860 * 119.92040 * 180.02562 * 6 5 4 16 16 C 1.40085 * 120.98502 * 359.73466 * 5 4 3 17 17 C 1.35926 * 121.18935 * 359.97438 * 16 5 4 18 18 C 1.41089 * 120.11277 * 0.02562 * 17 16 5 19 19 C 1.40377 * 120.47941 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00242 * 154.62064 * 19 18 17 21 21 C 1.40239 * 119.99875 * 334.62400 * 19 18 17 22 22 N 1.30674 * 119.99758 * 334.59948 * 21 19 18 23 23 Si 1.86797 * 120.00190 * 154.59826 * 21 19 18 24 24 H 1.48495 * 109.47301 * 179.97438 * 23 21 19 25 25 H 1.48496 * 109.47092 * 300.00150 * 23 21 19 26 26 H 1.48507 * 109.47023 * 59.99637 * 23 21 19 27 27 H 1.07991 * 120.10704 * 359.96814 * 4 3 2 28 28 H 1.08005 * 118.80278 * 359.97438 * 7 6 5 29 29 H 1.07997 * 126.13111 * 180.02562 * 13 11 10 30 30 H 1.08008 * 121.05404 * 0.02562 * 15 6 5 31 31 H 1.08000 * 119.40330 * 180.02562 * 16 5 4 32 32 H 1.07995 * 119.94246 * 180.02562 * 17 16 5 33 33 H 0.96997 * 120.00327 * 354.18014 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2751 -0.4720 -1.0997 5 6 4.6698 -0.4695 -1.0802 6 6 5.4153 -0.9795 -2.2505 7 6 4.7158 -1.4674 -3.3704 8 7 5.3249 -1.9226 -4.4313 9 6 6.6657 -1.9632 -4.5096 10 7 7.5201 -2.3660 -5.4313 11 7 8.8245 -2.1705 -4.9656 12 1 9.6302 -2.3878 -5.4601 13 6 8.7977 -1.6383 -3.7376 14 6 7.4699 -1.4751 -3.3772 15 6 6.8038 -0.9814 -2.2402 16 6 5.3746 0.0088 0.0320 17 6 4.7239 0.4854 1.1260 18 6 3.3135 0.5052 1.1580 19 6 2.6336 0.9952 2.2841 20 1 1.6343 1.3918 2.1814 21 6 3.2520 0.9699 3.5425 22 7 4.1884 0.0935 3.7928 23 14 2.7372 2.1890 4.8609 24 1 3.5360 1.9550 6.0906 25 1 2.9707 3.5724 4.3742 26 1 1.2951 2.0085 5.1661 27 1 2.7462 -0.8447 -1.9644 28 1 3.6359 -1.4603 -3.3530 29 1 9.6570 -1.3813 -3.1360 30 1 7.3551 -0.6150 -1.3867 31 1 6.4545 -0.0007 0.0195 32 1 5.2874 0.8496 1.9722 33 1 4.3973 -0.5929 3.1401 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241425095.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:55 Heat of formation + Delta-G solvation = 140.753059 kcal Electronic energy + Delta-G solvation = -20561.400846 eV Core-core repulsion = 17360.002540 eV Total energy + Delta-G solvation = -3201.398306 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.086 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.26986 -38.67497 -37.43513 -35.32624 -34.69807 -32.70703 -31.18728 -30.52336 -30.12869 -28.39540 -25.72494 -24.80484 -22.55162 -22.45094 -20.94485 -20.33524 -18.62821 -18.20174 -17.66946 -16.72687 -15.70017 -15.22984 -15.13523 -14.69568 -14.47078 -14.02179 -13.40044 -13.27099 -13.05716 -13.01353 -12.65341 -12.48338 -12.07933 -11.97141 -11.79170 -11.47474 -11.30695 -11.06987 -10.97747 -10.64866 -10.40285 -10.14311 -10.00726 -9.48068 -8.96153 -8.91872 -8.44404 -8.10910 -7.75136 -7.22751 -4.91148 0.53133 1.57837 2.01858 2.35505 2.54469 2.69348 2.94480 3.06957 3.14853 3.66525 3.74941 3.86467 4.08388 4.24040 4.33508 4.45223 5.02208 5.13761 5.16949 5.21528 5.23631 5.34657 5.64273 5.71442 5.93739 5.97217 6.37272 6.41500 6.50943 6.64424 6.78436 6.87570 6.97247 7.15523 7.26239 7.33008 7.47359 7.51350 7.61284 7.73746 8.14524 8.22352 8.27441 8.65234 9.46833 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.024702 B = 0.003749 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.223945 B = 7466.931159 C = 8495.952390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C 0.296 3.704 3 C -0.183 4.183 4 C 0.006 3.994 5 C -0.203 4.203 6 C -0.074 4.074 7 C 0.196 3.804 8 N -0.478 5.478 9 C 0.252 3.748 10 N -0.300 5.300 11 N -0.419 5.419 12 H 0.444 0.556 13 C 0.078 3.922 14 C -0.233 4.233 15 C -0.047 4.047 16 C -0.038 4.038 17 C -0.215 4.215 18 C 0.127 3.873 19 C -0.457 4.457 20 H 0.088 0.912 21 C 0.035 3.965 22 N -0.752 5.752 23 Si 1.066 2.934 24 H -0.267 1.267 25 H -0.267 1.267 26 H -0.270 1.270 27 H 0.107 0.893 28 H 0.164 0.836 29 H 0.188 0.812 30 H 0.134 0.866 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.633 -0.407 -4.956 12.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 C -0.014 4.014 3 C -0.189 4.189 4 C -0.015 4.015 5 C -0.205 4.205 6 C -0.077 4.077 7 C 0.010 3.990 8 N -0.190 5.190 9 C -0.009 4.009 10 N -0.132 5.132 11 N -0.121 5.121 12 H 0.288 0.712 13 C -0.082 4.082 14 C -0.245 4.245 15 C -0.075 4.075 16 C -0.057 4.057 17 C -0.234 4.234 18 C 0.121 3.879 19 C -0.483 4.483 20 H 0.106 0.894 21 C -0.192 4.192 22 N -0.372 5.372 23 Si 0.887 3.113 24 H -0.192 1.192 25 H -0.192 1.192 26 H -0.195 1.195 27 H 0.125 0.875 28 H 0.181 0.819 29 H 0.205 0.795 30 H 0.151 0.849 31 H 0.118 0.882 32 H 0.133 0.867 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 10.049 -0.851 -5.458 11.468 hybrid contribution 1.094 -0.018 -0.311 1.137 sum 11.143 -0.870 -5.770 12.578 Atomic orbital electron populations 1.81050 1.12625 1.13748 1.10487 1.25701 0.92639 0.91509 0.91535 1.16655 0.83321 1.18851 1.00085 1.20657 0.92763 0.93310 0.94812 1.17500 0.91577 1.16333 0.95089 1.19449 0.92906 1.00166 0.95212 1.23210 1.00268 0.88862 0.86631 1.67300 1.05920 1.19265 1.26504 1.21333 0.90827 0.97525 0.91187 1.77605 0.86091 1.29881 1.19644 1.46270 1.08337 1.44737 1.12739 0.71193 1.22667 0.98303 0.98904 0.88291 1.20350 0.92831 1.11921 0.99383 1.20826 0.93133 0.97974 0.95570 1.20408 0.97876 0.95036 0.92390 1.20758 0.93553 1.09426 0.99631 1.18501 0.91456 0.87262 0.90668 1.20945 1.03420 1.30384 0.93520 0.89376 1.27428 0.92222 0.98838 1.00702 1.70419 1.20038 1.08264 1.38448 0.83594 0.77592 0.75268 0.74826 1.19172 1.19231 1.19490 0.87547 0.81893 0.79463 0.84879 0.88190 0.86715 0.87713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.54 18.54 41.84 0.78 -10.77 16 2 C 0.30 6.57 14.30 -22.47 -0.32 6.25 16 3 C -0.18 -3.89 5.93 -104.28 -0.62 -4.51 16 4 C 0.01 0.10 9.12 -38.82 -0.35 -0.25 16 5 C -0.20 -3.62 5.88 -104.81 -0.62 -4.24 16 6 C -0.07 -1.20 5.88 -104.79 -0.62 -1.82 16 7 C 0.20 3.19 10.51 -17.15 -0.18 3.01 16 8 N -0.48 -8.57 10.42 -11.04 -0.12 -8.69 16 9 C 0.25 4.34 8.60 -156.40 -1.34 2.99 16 10 N -0.30 -4.70 12.68 31.96 0.41 -4.29 16 11 N -0.42 -4.26 7.17 30.87 0.22 -4.04 16 12 H 0.44 2.46 8.96 -182.76 -1.64 0.82 16 13 C 0.08 0.77 12.10 -16.56 -0.20 0.57 16 14 C -0.23 -3.37 6.33 -105.20 -0.67 -4.03 16 15 C -0.05 -0.70 9.57 -38.41 -0.37 -1.06 16 16 C -0.04 -0.69 9.29 -39.72 -0.37 -1.06 16 17 C -0.21 -4.37 7.88 -39.33 -0.31 -4.68 16 18 C 0.13 2.81 5.46 -104.61 -0.57 2.24 16 19 C -0.46 -10.39 8.48 -38.03 -0.32 -10.71 16 20 H 0.09 2.05 7.45 -52.49 -0.39 1.66 16 21 C 0.04 0.76 4.94 -17.29 -0.09 0.67 16 22 N -0.75 -16.59 12.31 55.56 0.68 -15.91 16 23 Si 1.07 18.41 30.00 -169.99 -5.10 13.31 16 24 H -0.27 -4.56 7.11 56.52 0.40 -4.16 16 25 H -0.27 -4.45 7.11 56.52 0.40 -4.04 16 26 H -0.27 -4.59 7.11 56.52 0.40 -4.19 16 27 H 0.11 1.72 6.08 -52.49 -0.32 1.40 16 28 H 0.16 2.30 6.04 -52.48 -0.32 1.98 16 29 H 0.19 0.95 8.06 -52.49 -0.42 0.53 16 30 H 0.13 1.68 6.17 -52.48 -0.32 1.36 16 31 H 0.10 1.54 6.09 -52.49 -0.32 1.22 16 32 H 0.11 2.37 6.49 -52.49 -0.34 2.03 16 33 H 0.31 6.89 6.68 -40.82 -0.27 6.62 16 LS Contribution 298.73 15.07 4.50 4.50 Total: -1.00 -28.59 298.73 -8.71 -37.30 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -3.14 Total: 5.22 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -6.94 Total: -16.63 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 1.97 Total: -43.69 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.10 Total: 13.31 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.59 -8.71 -37.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241425095.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.051 kcal (2) G-P(sol) polarization free energy of solvation -28.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds