Wall clock time and date at job start Tue Mar 31 2020 06:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39023 * 120.56077 * 66.72765 * 3 2 1 5 5 C 1.39488 * 119.79271 * 180.27995 * 4 3 2 6 6 C 1.47833 * 119.50407 * 179.71301 * 5 4 3 7 7 C 1.40758 * 119.92296 * 359.74521 * 6 5 4 8 8 N 1.30529 * 122.38688 * 179.66152 * 7 6 5 9 9 C 1.34368 * 121.57040 * 0.65031 * 8 7 6 10 10 N 1.31981 * 134.09933 * 179.68677 * 9 8 7 11 11 N 1.39880 * 109.17486 * 179.97438 * 10 9 8 12 12 H 0.97006 * 124.99223 * 180.02562 * 11 10 9 13 13 C 1.33858 * 110.01997 * 359.97438 * 11 10 9 14 14 C 1.38541 * 107.73913 * 359.97438 * 13 11 10 15 15 C 1.38860 * 119.92040 * 180.02562 * 6 5 4 16 16 C 1.40085 * 120.98502 * 359.73466 * 5 4 3 17 17 C 1.35926 * 121.18935 * 359.97438 * 16 5 4 18 18 C 1.41089 * 120.11277 * 0.02562 * 17 16 5 19 19 C 1.40377 * 120.47941 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00242 * 154.62064 * 19 18 17 21 21 C 1.40239 * 119.99875 * 334.62400 * 19 18 17 22 22 N 1.30674 * 119.99758 * 334.59948 * 21 19 18 23 23 Si 1.86797 * 120.00190 * 154.59826 * 21 19 18 24 24 H 1.48495 * 109.47301 * 179.97438 * 23 21 19 25 25 H 1.48496 * 109.47092 * 300.00150 * 23 21 19 26 26 H 1.48507 * 109.47023 * 59.99637 * 23 21 19 27 27 H 1.07991 * 120.10704 * 359.96814 * 4 3 2 28 28 H 1.08005 * 118.80278 * 359.97438 * 7 6 5 29 29 H 1.07997 * 126.13111 * 180.02562 * 13 11 10 30 30 H 1.08008 * 121.05404 * 0.02562 * 15 6 5 31 31 H 1.08000 * 119.40330 * 180.02562 * 16 5 4 32 32 H 1.07995 * 119.94246 * 180.02562 * 17 16 5 33 33 H 0.96997 * 120.00327 * 354.18014 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2751 -0.4720 -1.0997 5 6 4.6698 -0.4695 -1.0802 6 6 5.4153 -0.9795 -2.2505 7 6 4.7158 -1.4674 -3.3704 8 7 5.3249 -1.9226 -4.4313 9 6 6.6657 -1.9632 -4.5096 10 7 7.5201 -2.3660 -5.4313 11 7 8.8245 -2.1705 -4.9656 12 1 9.6302 -2.3878 -5.4601 13 6 8.7977 -1.6383 -3.7376 14 6 7.4699 -1.4751 -3.3772 15 6 6.8038 -0.9814 -2.2402 16 6 5.3746 0.0088 0.0320 17 6 4.7239 0.4854 1.1260 18 6 3.3135 0.5052 1.1580 19 6 2.6336 0.9952 2.2841 20 1 1.6343 1.3918 2.1814 21 6 3.2520 0.9699 3.5425 22 7 4.1884 0.0935 3.7928 23 14 2.7372 2.1890 4.8609 24 1 3.5360 1.9550 6.0906 25 1 2.9707 3.5724 4.3742 26 1 1.2951 2.0085 5.1661 27 1 2.7462 -0.8447 -1.9644 28 1 3.6359 -1.4603 -3.3530 29 1 9.6570 -1.3813 -3.1360 30 1 7.3551 -0.6150 -1.3867 31 1 6.4545 -0.0007 0.0195 32 1 5.2874 0.8496 1.9722 33 1 4.3973 -0.5929 3.1401 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241425095.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:54 Heat of formation + Delta-G solvation = 124.958428 kcal Electronic energy + Delta-G solvation = -20562.085753 eV Core-core repulsion = 17360.002540 eV Total energy + Delta-G solvation = -3202.083213 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.086 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.32123 -40.06178 -38.75019 -37.06258 -36.18668 -33.98534 -32.35813 -31.88636 -31.51584 -29.72887 -27.12144 -26.05235 -23.97545 -23.80991 -22.31029 -21.43959 -20.19011 -19.22242 -18.98006 -17.98301 -17.05011 -16.57358 -16.19057 -16.10775 -15.88788 -15.42538 -14.73746 -14.67428 -14.44440 -14.30693 -14.08358 -13.83735 -13.56755 -13.49086 -13.40874 -12.97306 -12.72513 -12.43210 -12.13125 -11.97004 -11.71906 -11.59213 -11.49570 -10.99692 -10.12187 -10.08621 -9.78327 -9.67580 -9.33899 -8.55727 -6.54041 -0.48440 0.26857 0.43383 1.11130 1.46524 1.53594 1.69909 1.72523 1.82027 1.99491 2.25852 2.33231 2.61544 3.01632 3.04085 3.47179 3.56518 3.60228 3.98673 4.06727 4.09807 4.27342 4.38526 4.49062 4.57638 4.77757 4.95130 4.97061 5.22359 5.30418 5.32610 5.49015 5.58592 5.69523 5.85152 5.94440 6.07976 6.19547 6.25213 6.45278 6.54588 6.67047 6.91956 7.09472 7.84025 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.024702 B = 0.003749 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.223945 B = 7466.931159 C = 8495.952390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C 0.302 3.698 3 C -0.205 4.205 4 C -0.003 4.003 5 C -0.176 4.176 6 C -0.113 4.113 7 C 0.191 3.809 8 N -0.516 5.516 9 C 0.227 3.773 10 N -0.348 5.348 11 N -0.396 5.396 12 H 0.466 0.534 13 C 0.138 3.862 14 C -0.274 4.274 15 C -0.006 4.006 16 C -0.033 4.033 17 C -0.224 4.224 18 C 0.113 3.887 19 C -0.502 4.502 20 H 0.068 0.932 21 C 0.013 3.987 22 N -0.771 5.771 23 Si 1.108 2.892 24 H -0.261 1.261 25 H -0.257 1.257 26 H -0.270 1.270 27 H 0.126 0.874 28 H 0.171 0.829 29 H 0.253 0.747 30 H 0.163 0.837 31 H 0.136 0.864 32 H 0.110 0.890 33 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.850 -0.437 -5.767 16.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.207 5.207 2 C -0.007 4.007 3 C -0.211 4.211 4 C -0.023 4.023 5 C -0.178 4.178 6 C -0.118 4.118 7 C 0.008 3.992 8 N -0.229 5.229 9 C -0.033 4.033 10 N -0.181 5.181 11 N -0.098 5.098 12 H 0.315 0.685 13 C -0.025 4.025 14 C -0.286 4.286 15 C -0.034 4.034 16 C -0.051 4.051 17 C -0.243 4.243 18 C 0.107 3.893 19 C -0.528 4.528 20 H 0.086 0.914 21 C -0.209 4.209 22 N -0.391 5.391 23 Si 0.925 3.075 24 H -0.185 1.185 25 H -0.182 1.182 26 H -0.195 1.195 27 H 0.144 0.856 28 H 0.188 0.812 29 H 0.269 0.731 30 H 0.180 0.820 31 H 0.154 0.846 32 H 0.128 0.872 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 14.269 -0.902 -6.323 15.633 hybrid contribution 0.224 -0.168 -0.459 0.538 sum 14.493 -1.070 -6.781 16.037 Atomic orbital electron populations 1.81016 1.13252 1.14994 1.11419 1.26000 0.92982 0.90884 0.90829 1.16875 0.82875 1.20251 1.01137 1.20891 0.93483 0.93172 0.94787 1.17726 0.91308 1.13527 0.95281 1.19305 0.93839 1.03612 0.94994 1.23290 1.00753 0.88642 0.86509 1.67226 1.07275 1.21016 1.27401 1.21643 0.91058 0.97951 0.92640 1.77558 0.87821 1.32054 1.20709 1.46379 1.07820 1.42651 1.12987 0.68510 1.23647 0.98267 0.93354 0.87223 1.20680 0.94579 1.14295 0.99014 1.21220 0.92546 0.93704 0.95889 1.20740 0.99699 0.93453 0.91240 1.20757 0.92786 1.10309 1.00426 1.18775 0.92568 0.87157 0.90792 1.20917 1.03253 1.33755 0.94848 0.91415 1.28403 0.91604 0.99230 1.01678 1.70503 1.21666 1.08867 1.38113 0.83082 0.77239 0.74111 0.73079 1.18507 1.18152 1.19474 0.85615 0.81234 0.73128 0.81960 0.84609 0.87225 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -25.33 18.54 19.00 0.35 -24.98 16 2 C 0.30 13.98 14.30 88.33 1.26 15.25 16 3 C -0.21 -8.98 5.93 -19.64 -0.12 -9.10 16 4 C 0.00 -0.10 9.12 22.76 0.21 0.11 16 5 C -0.18 -6.02 5.88 -19.99 -0.12 -6.14 16 6 C -0.11 -3.46 5.88 -19.97 -0.12 -3.57 16 7 C 0.19 6.09 10.51 85.50 0.90 6.99 16 8 N -0.52 -18.27 10.42 -188.85 -1.97 -20.23 16 9 C 0.23 7.36 8.60 136.85 1.18 8.54 16 10 N -0.35 -10.04 12.68 -52.79 -0.67 -10.71 16 11 N -0.40 -6.04 7.17 -56.23 -0.40 -6.45 16 12 H 0.47 2.62 8.96 -213.45 -1.91 0.71 16 13 C 0.14 1.79 12.10 84.46 1.02 2.82 16 14 C -0.27 -6.66 6.33 -20.24 -0.13 -6.79 16 15 C -0.01 -0.15 9.57 23.03 0.22 0.08 16 16 C -0.03 -1.11 9.29 22.18 0.21 -0.90 16 17 C -0.22 -9.09 7.88 22.43 0.18 -8.91 16 18 C 0.11 5.15 5.46 -19.86 -0.11 5.04 16 19 C -0.50 -23.97 8.48 23.28 0.20 -23.77 16 20 H 0.07 3.39 7.45 -2.91 -0.02 3.37 16 21 C 0.01 0.59 4.94 85.35 0.42 1.01 16 22 N -0.77 -34.91 12.31 21.88 0.27 -34.64 16 23 Si 1.11 37.95 30.00 68.60 2.06 40.00 16 24 H -0.26 -8.57 7.11 99.48 0.71 -7.86 16 25 H -0.26 -8.28 7.11 99.48 0.71 -7.58 16 26 H -0.27 -9.10 7.11 99.48 0.71 -8.40 16 27 H 0.13 4.08 6.08 -2.92 -0.02 4.06 16 28 H 0.17 4.82 6.04 -2.91 -0.02 4.81 16 29 H 0.25 0.06 8.06 -2.91 -0.02 0.04 16 30 H 0.16 3.04 6.17 -2.91 -0.02 3.02 16 31 H 0.14 3.57 6.09 -2.91 -0.02 3.55 16 32 H 0.11 4.55 6.49 -2.91 -0.02 4.53 16 33 H 0.30 13.74 6.68 -92.71 -0.62 13.12 16 Total: -1.00 -67.29 298.73 4.29 -62.99 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -0.55 Total: 13.37 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 5.20 Total: -19.36 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -2.42 Total: -97.01 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.06 Total: 40.00 kcal Total: -67.29 4.29 -62.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241425095.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.952 kcal (2) G-P(sol) polarization free energy of solvation -67.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds