Wall clock time and date at job start Tue Mar 31 2020 06:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39591 * 120.45385 * 242.41502 * 3 2 1 5 5 C 1.37704 * 120.19044 * 179.97438 * 4 3 2 6 6 C 1.39837 * 121.16771 * 0.04616 * 5 4 3 7 7 C 1.48269 * 119.54059 * 179.97438 * 6 5 4 8 8 C 1.40045 * 119.85436 * 179.72222 * 7 6 5 9 9 C 1.36255 * 120.56886 * 179.73161 * 8 7 6 10 10 C 1.39840 * 119.94977 * 0.52179 * 9 8 7 11 11 N 1.34816 * 134.62130 * 179.75555 * 10 9 8 12 12 N 1.28645 * 109.26672 * 180.02562 * 11 10 9 13 13 N 1.28814 * 111.78375 * 359.97438 * 12 11 10 14 14 H 0.97003 * 125.93435 * 180.02562 * 13 12 11 15 15 C 1.37326 * 108.13363 * 0.02562 * 13 12 11 16 16 C 1.38713 * 134.90023 * 180.02562 * 15 13 12 17 17 C 1.38643 * 120.92489 * 359.94995 * 6 5 4 18 18 C 1.40603 * 119.72640 * 359.73463 * 17 6 5 19 19 C 1.40836 * 120.54941 * 180.27445 * 18 17 6 20 20 H 1.07999 * 119.99884 * 204.67210 * 19 18 17 21 21 C 1.40239 * 120.00033 * 24.67909 * 19 18 17 22 22 N 1.30658 * 120.00142 * 17.27284 * 21 19 18 23 23 Si 1.86807 * 119.99836 * 197.27700 * 21 19 18 24 24 H 1.48497 * 109.46766 * 59.99777 * 23 21 19 25 25 H 1.48504 * 109.46827 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.46938 * 299.99846 * 23 21 19 27 27 H 1.07999 * 119.90304 * 0.02562 * 4 3 2 28 28 H 1.08004 * 119.41543 * 180.02562 * 5 4 3 29 29 H 1.07994 * 119.71458 * 359.97438 * 8 7 6 30 30 H 1.08002 * 120.01863 * 180.27757 * 9 8 7 31 31 H 1.08000 * 120.24122 * 359.97438 * 16 15 13 32 32 H 1.07995 * 120.13355 * 180.02562 * 17 6 5 33 33 H 0.96999 * 119.99648 * 184.60174 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2752 0.5582 1.0665 5 6 4.6522 0.5554 1.0612 6 6 5.3707 0.0005 -0.0025 7 6 6.8529 0.0175 0.0288 8 6 7.5790 -0.5417 -1.0302 9 6 8.9415 -0.5291 -1.0190 10 6 9.6256 0.0359 0.0618 11 7 10.9258 0.2017 0.3774 12 7 11.0141 0.7955 1.5152 13 7 9.8536 1.0538 2.0109 14 1 9.6816 1.4957 2.8571 15 6 8.9022 0.5948 1.1334 16 6 7.5153 0.5828 1.1111 17 6 4.7164 -0.5658 -1.0857 18 6 3.3109 -0.5896 -1.1167 19 6 2.6285 -1.1656 -2.2057 20 1 1.6216 -0.8524 -2.4388 21 6 3.2565 -2.1461 -2.9874 22 7 4.3117 -2.7677 -2.5321 23 14 2.5845 -2.5631 -4.6798 24 1 2.6116 -1.3500 -5.5358 25 1 3.4216 -3.6230 -5.2974 26 1 1.1867 -3.0475 -4.5517 27 1 2.7408 0.9922 1.8987 28 1 5.1868 0.9898 1.8930 29 1 7.0546 -0.9831 -1.8646 30 1 9.4925 -0.9589 -1.8425 31 1 6.9544 1.0099 1.9292 32 1 5.2840 -0.9912 -1.9001 33 1 4.7855 -3.3972 -3.0979 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241940655.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:01 Heat of formation + Delta-G solvation = 148.087882 kcal Electronic energy + Delta-G solvation = -20798.429059 eV Core-core repulsion = 17597.348814 eV Total energy + Delta-G solvation = -3201.080244 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.086 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.99656 -38.70966 -37.08899 -35.17726 -34.28849 -33.65570 -31.58953 -30.66841 -29.89314 -28.42947 -26.00464 -24.14510 -23.37278 -22.39459 -21.29011 -20.93656 -18.28437 -17.89375 -17.79791 -16.93321 -16.08007 -15.48739 -15.20725 -14.77377 -14.09444 -13.78407 -13.63542 -12.97572 -12.91339 -12.84784 -12.34050 -12.13357 -11.94232 -11.81623 -11.70423 -11.60756 -11.35513 -11.24458 -11.17497 -10.89169 -10.75340 -10.56876 -10.18982 -9.82047 -9.60628 -8.93310 -8.40105 -7.92334 -7.39837 -7.16852 -4.84715 0.59185 1.41228 1.97045 2.53837 2.59217 2.62685 2.86586 2.88890 3.00025 3.62092 3.70917 3.82667 4.17402 4.25190 4.34976 4.77706 4.97484 5.11203 5.26587 5.32289 5.34978 5.42928 5.70485 5.86885 6.00453 6.10503 6.29638 6.37407 6.51160 6.59194 6.72831 6.80277 6.86205 6.95323 7.06696 7.32279 7.51013 7.59291 7.72225 8.05209 8.28986 8.38268 8.38503 8.72725 9.63060 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.017613 B = 0.004615 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.323882 B = 6065.287219 C = 7575.476263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.298 3.702 3 C -0.182 4.182 4 C -0.027 4.027 5 C -0.235 4.235 6 C -0.028 4.028 7 C 0.026 3.974 8 C -0.102 4.102 9 C -0.054 4.054 10 C -0.005 4.005 11 N -0.252 5.252 12 N -0.035 5.035 13 N -0.426 5.426 14 H 0.449 0.551 15 C 0.036 3.964 16 C -0.118 4.118 17 C -0.132 4.132 18 C 0.147 3.853 19 C -0.425 4.425 20 H 0.087 0.913 21 C 0.077 3.923 22 N -0.763 5.763 23 Si 0.914 3.086 24 H -0.257 1.257 25 H -0.272 1.272 26 H -0.260 1.260 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.147 0.853 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.898 3.142 2.638 9.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.186 5.186 2 C -0.012 4.012 3 C -0.188 4.188 4 C -0.048 4.048 5 C -0.255 4.255 6 C -0.029 4.029 7 C 0.022 3.978 8 C -0.123 4.123 9 C -0.076 4.076 10 C -0.130 4.130 11 N -0.130 5.130 12 N -0.016 5.016 13 N -0.153 5.153 14 H 0.295 0.705 15 C -0.084 4.084 16 C -0.140 4.140 17 C -0.151 4.151 18 C 0.141 3.859 19 C -0.452 4.452 20 H 0.105 0.895 21 C -0.146 4.146 22 N -0.385 5.385 23 Si 0.736 3.264 24 H -0.181 1.181 25 H -0.196 1.196 26 H -0.184 1.184 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.164 0.836 30 H 0.154 0.846 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.849 2.958 2.737 9.723 hybrid contribution -0.984 -0.052 -0.143 0.996 sum 7.865 2.906 2.594 8.777 Atomic orbital electron populations 1.81033 1.12754 1.14015 1.10813 1.25787 0.92735 0.91190 0.91442 1.16984 0.83286 1.19203 0.99349 1.20376 0.93555 0.95770 0.95100 1.20107 0.93072 1.11950 1.00371 1.18396 0.88928 0.99556 0.96014 1.18980 0.93628 0.93196 0.91983 1.21154 0.92854 0.98963 0.99312 1.19927 0.93465 0.98296 0.95919 1.19936 0.89788 1.05670 0.97583 1.75250 1.17313 1.14614 1.05774 1.77865 1.05968 1.12040 1.05775 1.44723 1.03612 1.46780 1.20217 0.70538 1.19721 0.93226 1.02951 0.92465 1.20078 0.88560 1.04609 1.00716 1.21484 0.93844 1.01659 0.98150 1.18338 0.91158 0.87447 0.88922 1.19786 1.01610 1.15337 1.08448 0.89515 1.26088 0.94413 0.93819 1.00276 1.69684 1.15044 1.17424 1.36393 0.86220 0.80358 0.79419 0.80353 1.18143 1.19639 1.18435 0.88076 0.88151 0.83552 0.84639 0.84668 0.84765 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -11.76 18.54 41.84 0.78 -10.98 16 2 C 0.30 6.66 14.28 -22.48 -0.32 6.34 16 3 C -0.18 -3.90 5.95 -104.13 -0.62 -4.52 16 4 C -0.03 -0.51 9.74 -39.27 -0.38 -0.89 16 5 C -0.24 -4.12 9.36 -39.18 -0.37 -4.48 16 6 C -0.03 -0.51 5.86 -105.02 -0.62 -1.12 16 7 C 0.03 0.42 5.88 -104.85 -0.62 -0.20 16 8 C -0.10 -1.54 9.33 -39.62 -0.37 -1.90 16 9 C -0.05 -0.76 10.03 -39.70 -0.40 -1.16 16 10 C -0.01 -0.08 7.36 -84.97 -0.63 -0.70 16 11 N -0.25 -4.04 12.43 32.08 0.40 -3.64 16 12 N -0.04 -0.50 13.28 60.35 0.80 0.30 16 13 N -0.43 -4.96 7.07 32.31 0.23 -4.73 16 14 H 0.45 3.24 8.96 -190.23 -1.71 1.54 16 15 C 0.04 0.50 7.40 -84.24 -0.62 -0.12 16 16 C -0.12 -1.64 9.43 -39.16 -0.37 -2.01 16 17 C -0.13 -2.71 8.06 -38.54 -0.31 -3.02 16 18 C 0.15 3.28 5.73 -104.68 -0.60 2.68 16 19 C -0.42 -9.69 8.58 -37.85 -0.32 -10.02 16 20 H 0.09 2.02 7.37 -52.49 -0.39 1.64 16 21 C 0.08 1.62 5.16 -17.30 -0.09 1.53 16 22 N -0.76 -16.00 10.95 55.56 0.61 -15.39 16 23 Si 0.91 16.15 29.60 -169.99 -5.03 11.12 16 24 H -0.26 -4.53 7.11 56.52 0.40 -4.12 16 25 H -0.27 -4.61 7.11 56.52 0.40 -4.21 16 26 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 27 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.10 1.47 6.07 -52.48 -0.32 1.15 16 29 H 0.15 2.16 6.11 -52.49 -0.32 1.84 16 30 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.14 1.60 6.11 -52.49 -0.32 1.28 16 32 H 0.13 2.70 4.21 -52.49 -0.22 2.48 16 33 H 0.29 5.51 8.30 -40.82 -0.34 5.18 16 LS Contribution 298.57 15.07 4.50 4.50 Total: -1.00 -26.00 298.57 -7.60 -33.60 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -3.25 Total: 4.83 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -6.63 Total: -19.61 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 2.81 Total: -34.44 kcal Atomic # 14 Polarization: 16.15 SS G_CDS: -5.03 Total: 11.12 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -26.00 -7.60 -33.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241940655.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.692 kcal (2) G-P(sol) polarization free energy of solvation -26.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds