Wall clock time and date at job start Tue Mar 31 2020 06:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39591 * 120.45385 * 242.41502 * 3 2 1 5 5 C 1.37704 * 120.19044 * 179.97438 * 4 3 2 6 6 C 1.39837 * 121.16771 * 0.04616 * 5 4 3 7 7 C 1.48269 * 119.54059 * 179.97438 * 6 5 4 8 8 C 1.40045 * 119.85436 * 179.72222 * 7 6 5 9 9 C 1.36255 * 120.56886 * 179.73161 * 8 7 6 10 10 C 1.39840 * 119.94977 * 0.52179 * 9 8 7 11 11 N 1.34816 * 134.62130 * 179.75555 * 10 9 8 12 12 N 1.28645 * 109.26672 * 180.02562 * 11 10 9 13 13 N 1.28814 * 111.78375 * 359.97438 * 12 11 10 14 14 H 0.97003 * 125.93435 * 180.02562 * 13 12 11 15 15 C 1.37326 * 108.13363 * 0.02562 * 13 12 11 16 16 C 1.38713 * 134.90023 * 180.02562 * 15 13 12 17 17 C 1.38643 * 120.92489 * 359.94995 * 6 5 4 18 18 C 1.40603 * 119.72640 * 359.73463 * 17 6 5 19 19 C 1.40836 * 120.54941 * 180.27445 * 18 17 6 20 20 H 1.07999 * 119.99884 * 204.67210 * 19 18 17 21 21 C 1.40239 * 120.00033 * 24.67909 * 19 18 17 22 22 N 1.30658 * 120.00142 * 17.27284 * 21 19 18 23 23 Si 1.86807 * 119.99836 * 197.27700 * 21 19 18 24 24 H 1.48497 * 109.46766 * 59.99777 * 23 21 19 25 25 H 1.48504 * 109.46827 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.46938 * 299.99846 * 23 21 19 27 27 H 1.07999 * 119.90304 * 0.02562 * 4 3 2 28 28 H 1.08004 * 119.41543 * 180.02562 * 5 4 3 29 29 H 1.07994 * 119.71458 * 359.97438 * 8 7 6 30 30 H 1.08002 * 120.01863 * 180.27757 * 9 8 7 31 31 H 1.08000 * 120.24122 * 359.97438 * 16 15 13 32 32 H 1.07995 * 120.13355 * 180.02562 * 17 6 5 33 33 H 0.96999 * 119.99648 * 184.60174 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2752 0.5582 1.0665 5 6 4.6522 0.5554 1.0612 6 6 5.3707 0.0005 -0.0025 7 6 6.8529 0.0175 0.0288 8 6 7.5790 -0.5417 -1.0302 9 6 8.9415 -0.5291 -1.0190 10 6 9.6256 0.0359 0.0618 11 7 10.9258 0.2017 0.3774 12 7 11.0141 0.7955 1.5152 13 7 9.8536 1.0538 2.0109 14 1 9.6816 1.4957 2.8571 15 6 8.9022 0.5948 1.1334 16 6 7.5153 0.5828 1.1111 17 6 4.7164 -0.5658 -1.0857 18 6 3.3109 -0.5896 -1.1167 19 6 2.6285 -1.1656 -2.2057 20 1 1.6216 -0.8524 -2.4388 21 6 3.2565 -2.1461 -2.9874 22 7 4.3117 -2.7677 -2.5321 23 14 2.5845 -2.5631 -4.6798 24 1 2.6116 -1.3500 -5.5358 25 1 3.4216 -3.6230 -5.2974 26 1 1.1867 -3.0475 -4.5517 27 1 2.7408 0.9922 1.8987 28 1 5.1868 0.9898 1.8930 29 1 7.0546 -0.9831 -1.8646 30 1 9.4925 -0.9589 -1.8425 31 1 6.9544 1.0099 1.9292 32 1 5.2840 -0.9912 -1.9001 33 1 4.7855 -3.3972 -3.0979 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241940655.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:59 Heat of formation + Delta-G solvation = 134.962897 kcal Electronic energy + Delta-G solvation = -20798.998201 eV Core-core repulsion = 17597.348814 eV Total energy + Delta-G solvation = -3201.649386 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.086 amu Computer time = 3.31 seconds Orbital eigenvalues (eV) -44.10555 -40.05935 -38.46251 -36.87913 -35.79954 -34.79676 -32.95526 -31.96704 -31.26127 -29.75320 -27.56297 -25.41410 -24.61377 -23.55087 -22.63136 -22.38071 -19.56300 -19.32740 -19.05608 -18.38176 -17.17591 -16.95901 -16.52690 -16.03482 -15.38376 -15.24424 -14.87004 -14.54816 -14.48325 -14.32557 -13.66753 -13.49910 -13.41278 -13.19186 -13.17502 -12.98022 -12.83423 -12.64542 -12.46700 -12.18882 -12.07192 -11.83770 -11.67736 -11.25638 -11.12830 -10.22644 -9.55200 -9.47513 -8.88855 -8.60231 -6.49381 -0.60754 0.21364 0.60524 1.04865 1.35585 1.40779 1.49041 1.57932 1.66631 2.07214 2.16712 2.32055 2.69123 2.87987 3.08758 3.61625 3.68941 3.74174 3.81144 3.98253 4.22085 4.28023 4.43601 4.55368 4.72142 4.93171 5.00219 5.08322 5.15649 5.20904 5.29755 5.47349 5.53851 5.73182 5.82834 5.97178 6.03393 6.10694 6.19213 6.46962 6.68859 6.80316 7.00469 7.26978 8.11074 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.017613 B = 0.004615 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.323882 B = 6065.287219 C = 7575.476263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C 0.304 3.696 3 C -0.208 4.208 4 C -0.027 4.027 5 C -0.224 4.224 6 C -0.017 4.017 7 C -0.001 4.001 8 C -0.103 4.103 9 C -0.055 4.055 10 C -0.017 4.017 11 N -0.281 5.281 12 N -0.033 5.033 13 N -0.398 5.398 14 H 0.469 0.531 15 C 0.030 3.970 16 C -0.094 4.094 17 C -0.156 4.156 18 C 0.128 3.872 19 C -0.464 4.464 20 H 0.066 0.934 21 C 0.052 3.948 22 N -0.781 5.781 23 Si 0.969 3.031 24 H -0.257 1.257 25 H -0.255 1.255 26 H -0.272 1.272 27 H 0.128 0.872 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.153 0.847 31 H 0.164 0.836 32 H 0.131 0.869 33 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.749 3.896 4.032 12.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.214 5.214 2 C -0.004 4.004 3 C -0.214 4.214 4 C -0.047 4.047 5 C -0.243 4.243 6 C -0.018 4.018 7 C -0.004 4.004 8 C -0.124 4.124 9 C -0.077 4.077 10 C -0.142 4.142 11 N -0.158 5.158 12 N -0.015 5.015 13 N -0.129 5.129 14 H 0.320 0.680 15 C -0.090 4.090 16 C -0.116 4.116 17 C -0.175 4.175 18 C 0.122 3.878 19 C -0.492 4.492 20 H 0.085 0.915 21 C -0.170 4.170 22 N -0.404 5.404 23 Si 0.790 3.210 24 H -0.181 1.181 25 H -0.179 1.179 26 H -0.197 1.197 27 H 0.145 0.855 28 H 0.158 0.842 29 H 0.159 0.841 30 H 0.171 0.829 31 H 0.181 0.819 32 H 0.149 0.851 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.717 3.727 4.165 12.087 hybrid contribution -1.357 -0.192 -0.389 1.424 sum 9.360 3.535 3.776 10.694 Atomic orbital electron populations 1.81006 1.13396 1.15261 1.11755 1.26091 0.93064 0.90548 0.90746 1.17272 0.82847 1.20739 1.00545 1.20704 0.94259 0.94971 0.94810 1.20568 0.92757 1.10200 1.00794 1.18644 0.90442 0.97609 0.95149 1.18891 0.92369 0.95627 0.93558 1.21130 0.93187 0.98936 0.99157 1.20057 0.93132 0.98169 0.96385 1.20238 0.89987 1.05643 0.98298 1.75267 1.17787 1.16074 1.06658 1.77810 1.06768 1.11462 1.05430 1.44743 1.02433 1.45288 1.20454 0.68011 1.19714 0.93392 1.03269 0.92620 1.20224 0.88559 1.02517 1.00250 1.21473 0.93140 1.03461 0.99414 1.18622 0.92261 0.87716 0.89152 1.19824 1.01363 1.17445 1.10522 0.91533 1.26588 0.94640 0.93205 1.02539 1.69672 1.15614 1.17731 1.37417 0.85420 0.79165 0.79426 0.77025 1.18101 1.17859 1.19740 0.85459 0.84195 0.84072 0.82930 0.81897 0.85131 0.88576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -25.35 18.54 19.00 0.35 -25.00 16 2 C 0.30 13.88 14.28 88.33 1.26 15.15 16 3 C -0.21 -8.96 5.95 -19.54 -0.12 -9.08 16 4 C -0.03 -0.95 9.74 22.47 0.22 -0.73 16 5 C -0.22 -7.13 9.36 22.53 0.21 -6.92 16 6 C -0.02 -0.60 5.86 -20.13 -0.12 -0.72 16 7 C 0.00 -0.02 5.88 -20.01 -0.12 -0.13 16 8 C -0.10 -2.98 9.33 22.25 0.21 -2.78 16 9 C -0.06 -1.48 10.03 22.20 0.22 -1.26 16 10 C -0.02 -0.48 7.36 39.71 0.29 -0.18 16 11 N -0.28 -8.39 12.43 -52.43 -0.65 -9.04 16 12 N -0.03 -0.85 13.28 37.02 0.49 -0.35 16 13 N -0.40 -7.76 7.07 -51.69 -0.37 -8.13 16 14 H 0.47 4.70 8.96 -219.81 -1.97 2.73 16 15 C 0.03 0.74 7.40 39.04 0.29 1.03 16 16 C -0.09 -2.25 9.43 22.54 0.21 -2.04 16 17 C -0.16 -6.43 8.06 22.94 0.18 -6.25 16 18 C 0.13 5.86 5.73 -19.90 -0.11 5.75 16 19 C -0.46 -22.16 8.58 23.39 0.20 -21.96 16 20 H 0.07 3.32 7.37 -2.91 -0.02 3.29 16 21 C 0.05 2.23 5.16 85.35 0.44 2.67 16 22 N -0.78 -33.36 10.95 21.88 0.24 -33.12 16 23 Si 0.97 33.76 29.60 68.60 2.03 35.79 16 24 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 25 H -0.26 -8.09 7.11 99.48 0.71 -7.39 16 26 H -0.27 -9.93 7.11 99.48 0.71 -9.23 16 27 H 0.13 3.78 8.06 -2.91 -0.02 3.75 16 28 H 0.14 3.31 6.07 -2.91 -0.02 3.30 16 29 H 0.14 4.18 6.11 -2.91 -0.02 4.17 16 30 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 31 H 0.16 2.93 6.11 -2.91 -0.02 2.91 16 32 H 0.13 5.39 4.21 -2.91 -0.01 5.38 16 33 H 0.30 11.43 8.30 -92.71 -0.77 10.66 16 Total: -1.00 -57.09 298.57 4.62 -52.47 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -0.75 Total: 14.85 kcal Atomic # 6 Polarization: -30.74 SS G_CDS: 3.27 Total: -27.47 kcal Atomic # 7 Polarization: -75.71 SS G_CDS: 0.07 Total: -75.64 kcal Atomic # 14 Polarization: 33.76 SS G_CDS: 2.03 Total: 35.79 kcal Total: -57.09 4.62 -52.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241940655.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.434 kcal (2) G-P(sol) polarization free energy of solvation -57.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.31 seconds