Wall clock time and date at job start Tue Mar 31 2020 06:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39067 * 120.56289 * 231.83753 * 3 2 1 5 5 C 1.39426 * 119.79978 * 180.30457 * 4 3 2 6 6 C 1.47928 * 119.50125 * 179.69178 * 5 4 3 7 7 C 1.40249 * 119.87381 * 359.74345 * 6 5 4 8 8 C 1.36160 * 120.55765 * 179.71713 * 7 6 5 9 9 C 1.39945 * 119.97234 * 0.55740 * 8 7 6 10 10 N 1.34753 * 134.59714 * 179.72329 * 9 8 7 11 11 N 1.28643 * 109.29412 * 179.97438 * 10 9 8 12 12 N 1.28813 * 111.79344 * 359.97438 * 11 10 9 13 13 H 0.97005 * 125.93875 * 180.02562 * 12 11 10 14 14 C 1.37360 * 108.11880 * 0.02562 * 12 11 10 15 15 C 1.38624 * 134.89859 * 180.02562 * 14 12 11 16 16 C 1.40020 * 120.99845 * 359.70591 * 5 4 3 17 17 C 1.35983 * 121.18532 * 0.02710 * 16 5 4 18 18 C 1.41059 * 120.11435 * 359.97438 * 17 16 5 19 19 C 1.40413 * 120.48660 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99724 * 154.63388 * 19 18 17 21 21 C 1.40289 * 120.00153 * 334.64576 * 19 18 17 22 22 N 1.30639 * 119.99812 * 334.60176 * 21 19 18 23 23 Si 1.86808 * 120.00167 * 154.60935 * 21 19 18 24 24 H 1.48502 * 109.46873 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.46794 * 299.99213 * 23 21 19 26 26 H 1.48499 * 109.47070 * 59.99594 * 23 21 19 27 27 H 1.07998 * 120.09958 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.72104 * 359.97438 * 7 6 5 29 29 H 1.07999 * 120.01662 * 180.25195 * 8 7 6 30 30 H 1.07994 * 120.24438 * 0.02562 * 15 14 12 31 31 H 1.07997 * 119.40988 * 180.02562 * 16 5 4 32 32 H 1.07998 * 119.94136 * 179.97438 * 17 16 5 33 33 H 0.97000 * 120.00132 * 354.19347 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2747 0.7409 0.9415 5 6 4.6689 0.7351 0.9230 6 6 5.4140 1.5303 1.9233 7 6 4.7153 2.2858 2.8762 8 6 5.3871 3.0182 3.8069 9 6 6.7865 3.0302 3.8102 10 7 7.7257 3.6331 4.5654 11 7 8.8926 3.3018 4.1370 12 7 8.8230 2.5035 3.1284 13 1 9.5765 2.1272 2.6471 14 6 7.4963 2.2778 2.8531 15 6 6.8058 1.5291 1.9128 16 6 5.3743 -0.0118 -0.0284 17 6 4.7241 -0.7542 -0.9640 18 6 3.3141 -0.7834 -0.9896 19 6 2.6347 -1.5468 -1.9526 20 1 1.6358 -1.9048 -1.7514 21 6 3.2536 -1.8447 -3.1758 22 7 4.1890 -1.0612 -3.6425 23 14 2.7400 -3.3617 -4.1374 24 1 3.5389 -3.4502 -5.3861 25 1 2.9747 -4.5737 -3.3122 26 1 1.2979 -3.2667 -4.4787 27 1 2.7453 1.3220 1.6820 28 1 3.6353 2.2833 2.8744 29 1 4.8403 3.5936 4.5392 30 1 7.3437 0.9494 1.1774 31 1 6.4541 0.0019 -0.0190 32 1 5.2884 -1.3224 -1.6887 33 1 4.3972 -0.2302 -3.1876 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241941421.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:07 Heat of formation + Delta-G solvation = 139.707183 kcal Electronic energy + Delta-G solvation = -20609.548648 eV Core-core repulsion = 17408.104990 eV Total energy + Delta-G solvation = -3201.443659 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.086 amu Computer time = 11.95 seconds Orbital eigenvalues (eV) -42.91250 -38.82367 -37.28965 -35.40081 -34.61626 -33.59566 -31.31212 -30.84541 -29.88502 -28.77391 -25.93883 -23.88466 -23.13234 -22.53593 -21.81477 -20.98133 -18.72069 -18.15758 -17.94356 -16.72310 -16.01040 -15.53789 -15.17798 -14.50722 -14.36369 -13.99232 -13.78653 -13.35773 -13.14340 -12.61928 -12.35277 -12.32823 -12.11489 -11.96854 -11.84426 -11.56275 -11.49422 -11.21680 -11.07002 -10.89951 -10.70534 -10.62255 -10.12339 -10.03818 -9.60932 -8.95306 -8.44300 -8.22472 -7.88167 -7.48803 -5.05182 0.69511 1.45622 1.91466 2.19162 2.65803 2.69901 2.88038 2.99022 3.08532 3.58379 3.65024 3.69208 4.11086 4.19449 4.22753 4.81885 4.98262 5.06074 5.14633 5.17985 5.34547 5.39299 5.56860 5.79929 5.84419 6.08802 6.26804 6.31739 6.39255 6.46419 6.62727 6.76376 6.84327 6.96160 7.05428 7.17373 7.22755 7.37021 7.49913 7.62400 8.02649 8.13536 8.45739 8.55355 9.35159 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.024315 B = 0.003767 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.270395 B = 7430.921598 C = 8477.940254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C 0.295 3.705 3 C -0.184 4.184 4 C 0.018 3.982 5 C -0.223 4.223 6 C 0.064 3.936 7 C -0.129 4.129 8 C -0.043 4.043 9 C -0.026 4.026 10 N -0.250 5.250 11 N -0.044 5.044 12 N -0.431 5.431 13 H 0.448 0.552 14 C 0.053 3.947 15 C -0.156 4.156 16 C -0.033 4.033 17 C -0.216 4.216 18 C 0.126 3.874 19 C -0.448 4.448 20 H 0.090 0.910 21 C 0.034 3.966 22 N -0.746 5.746 23 Si 1.066 2.934 24 H -0.266 1.266 25 H -0.266 1.266 26 H -0.269 1.269 27 H 0.109 0.891 28 H 0.136 0.864 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.766 0.996 3.824 7.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.176 5.176 2 C -0.015 4.015 3 C -0.190 4.190 4 C -0.003 4.003 5 C -0.225 4.225 6 C 0.060 3.940 7 C -0.150 4.150 8 C -0.065 4.065 9 C -0.151 4.151 10 N -0.127 5.127 11 N -0.025 5.025 12 N -0.158 5.158 13 H 0.293 0.707 14 C -0.067 4.067 15 C -0.178 4.178 16 C -0.052 4.052 17 C -0.235 4.235 18 C 0.120 3.880 19 C -0.473 4.473 20 H 0.108 0.892 21 C -0.194 4.194 22 N -0.365 5.365 23 Si 0.887 3.113 24 H -0.191 1.191 25 H -0.191 1.191 26 H -0.194 1.194 27 H 0.127 0.873 28 H 0.153 0.847 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.119 0.881 32 H 0.134 0.866 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.288 0.991 3.459 7.245 hybrid contribution 0.099 0.126 0.337 0.374 sum 6.388 1.117 3.797 7.514 Atomic orbital electron populations 1.81061 1.12574 1.12409 1.11550 1.25677 0.92612 0.91667 0.91551 1.16672 0.83386 1.11438 1.07494 1.20715 0.92754 0.93079 0.93783 1.17594 0.91746 1.10436 1.02690 1.18702 0.91143 0.91820 0.92294 1.20960 1.00538 0.98063 0.95404 1.19859 0.89438 0.98560 0.98644 1.19845 0.95404 1.02453 0.97354 1.75161 0.94061 1.20780 1.22743 1.77845 1.19069 1.05731 0.99852 1.44707 1.07155 1.37785 1.26173 0.70664 1.19709 0.84060 1.02341 1.00545 1.19888 0.93288 1.04119 1.00485 1.20443 0.97948 0.93833 0.92974 1.20777 0.93535 1.06088 1.03118 1.18522 0.91494 0.87745 0.90231 1.21047 1.03413 1.23093 0.99744 0.89172 1.27500 0.92167 1.03167 0.96562 1.70413 1.19593 1.09122 1.37393 0.83586 0.77696 0.73408 0.76595 1.19051 1.19133 1.19369 0.87316 0.84675 0.84970 0.85245 0.88086 0.86630 0.87621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.12 18.54 41.84 0.78 -10.35 16 2 C 0.30 6.34 14.30 -22.48 -0.32 6.01 16 3 C -0.18 -3.78 5.93 -104.27 -0.62 -4.40 16 4 C 0.02 0.32 9.12 -38.83 -0.35 -0.03 16 5 C -0.22 -3.84 5.88 -104.82 -0.62 -4.46 16 6 C 0.06 0.99 5.88 -104.82 -0.62 0.37 16 7 C -0.13 -1.79 9.33 -39.57 -0.37 -2.16 16 8 C -0.04 -0.59 10.03 -39.69 -0.40 -0.99 16 9 C -0.03 -0.40 7.36 -84.93 -0.63 -1.02 16 10 N -0.25 -4.08 12.42 32.10 0.40 -3.68 16 11 N -0.04 -0.65 13.28 60.35 0.80 0.15 16 12 N -0.43 -5.28 7.08 32.31 0.23 -5.06 16 13 H 0.45 3.57 8.96 -190.23 -1.71 1.86 16 14 C 0.05 0.76 7.40 -84.23 -0.62 0.14 16 15 C -0.16 -2.21 9.43 -39.09 -0.37 -2.58 16 16 C -0.03 -0.58 9.29 -39.72 -0.37 -0.95 16 17 C -0.22 -4.27 7.88 -39.32 -0.31 -4.58 16 18 C 0.13 2.70 5.46 -104.61 -0.57 2.13 16 19 C -0.45 -9.85 8.48 -37.99 -0.32 -10.18 16 20 H 0.09 2.03 7.45 -52.48 -0.39 1.64 16 21 C 0.03 0.70 4.95 -17.29 -0.09 0.62 16 22 N -0.75 -16.00 12.31 55.57 0.68 -15.32 16 23 Si 1.07 17.80 30.01 -169.99 -5.10 12.70 16 24 H -0.27 -4.41 7.11 56.52 0.40 -4.01 16 25 H -0.27 -4.29 7.11 56.52 0.40 -3.88 16 26 H -0.27 -4.41 7.11 56.52 0.40 -4.01 16 27 H 0.11 1.68 6.10 -52.49 -0.32 1.36 16 28 H 0.14 1.65 6.10 -52.49 -0.32 1.33 16 29 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.13 1.62 6.10 -52.49 -0.32 1.30 16 31 H 0.10 1.52 6.07 -52.49 -0.32 1.20 16 32 H 0.12 2.32 6.48 -52.49 -0.34 1.98 16 33 H 0.31 6.71 6.68 -40.82 -0.27 6.44 16 LS Contribution 297.69 15.07 4.49 4.49 Total: -1.00 -25.34 297.69 -7.50 -32.85 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -3.21 Total: 6.29 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -6.57 Total: -22.08 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 2.89 Total: -34.25 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.10 Total: 12.70 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -25.34 -7.50 -32.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241941421.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.555 kcal (2) G-P(sol) polarization free energy of solvation -25.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.95 seconds