Wall clock time and date at job start Tue Mar 31 2020 06:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39067 * 120.56289 * 231.83753 * 3 2 1 5 5 C 1.39426 * 119.79978 * 180.30457 * 4 3 2 6 6 C 1.47928 * 119.50125 * 179.69178 * 5 4 3 7 7 C 1.40249 * 119.87381 * 359.74345 * 6 5 4 8 8 C 1.36160 * 120.55765 * 179.71713 * 7 6 5 9 9 C 1.39945 * 119.97234 * 0.55740 * 8 7 6 10 10 N 1.34753 * 134.59714 * 179.72329 * 9 8 7 11 11 N 1.28643 * 109.29412 * 179.97438 * 10 9 8 12 12 N 1.28813 * 111.79344 * 359.97438 * 11 10 9 13 13 H 0.97005 * 125.93875 * 180.02562 * 12 11 10 14 14 C 1.37360 * 108.11880 * 0.02562 * 12 11 10 15 15 C 1.38624 * 134.89859 * 180.02562 * 14 12 11 16 16 C 1.40020 * 120.99845 * 359.70591 * 5 4 3 17 17 C 1.35983 * 121.18532 * 0.02710 * 16 5 4 18 18 C 1.41059 * 120.11435 * 359.97438 * 17 16 5 19 19 C 1.40413 * 120.48660 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99724 * 154.63388 * 19 18 17 21 21 C 1.40289 * 120.00153 * 334.64576 * 19 18 17 22 22 N 1.30639 * 119.99812 * 334.60176 * 21 19 18 23 23 Si 1.86808 * 120.00167 * 154.60935 * 21 19 18 24 24 H 1.48502 * 109.46873 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.46794 * 299.99213 * 23 21 19 26 26 H 1.48499 * 109.47070 * 59.99594 * 23 21 19 27 27 H 1.07998 * 120.09958 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.72104 * 359.97438 * 7 6 5 29 29 H 1.07999 * 120.01662 * 180.25195 * 8 7 6 30 30 H 1.07994 * 120.24438 * 0.02562 * 15 14 12 31 31 H 1.07997 * 119.40988 * 180.02562 * 16 5 4 32 32 H 1.07998 * 119.94136 * 179.97438 * 17 16 5 33 33 H 0.97000 * 120.00132 * 354.19347 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2747 0.7409 0.9415 5 6 4.6689 0.7351 0.9230 6 6 5.4140 1.5303 1.9233 7 6 4.7153 2.2858 2.8762 8 6 5.3871 3.0182 3.8069 9 6 6.7865 3.0302 3.8102 10 7 7.7257 3.6331 4.5654 11 7 8.8926 3.3018 4.1370 12 7 8.8230 2.5035 3.1284 13 1 9.5765 2.1272 2.6471 14 6 7.4963 2.2778 2.8531 15 6 6.8058 1.5291 1.9128 16 6 5.3743 -0.0118 -0.0284 17 6 4.7241 -0.7542 -0.9640 18 6 3.3141 -0.7834 -0.9896 19 6 2.6347 -1.5468 -1.9526 20 1 1.6358 -1.9048 -1.7514 21 6 3.2536 -1.8447 -3.1758 22 7 4.1890 -1.0612 -3.6425 23 14 2.7400 -3.3617 -4.1374 24 1 3.5389 -3.4502 -5.3861 25 1 2.9747 -4.5737 -3.3122 26 1 1.2979 -3.2667 -4.4787 27 1 2.7453 1.3220 1.6820 28 1 3.6353 2.2833 2.8744 29 1 4.8403 3.5936 4.5392 30 1 7.3437 0.9494 1.1774 31 1 6.4541 0.0019 -0.0190 32 1 5.2884 -1.3224 -1.6887 33 1 4.3972 -0.2302 -3.1876 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241941421.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:04 Heat of formation + Delta-G solvation = 127.325748 kcal Electronic energy + Delta-G solvation = -20610.085548 eV Core-core repulsion = 17408.104990 eV Total energy + Delta-G solvation = -3201.980558 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.086 amu Computer time = 3.07 seconds Orbital eigenvalues (eV) -44.05015 -40.20546 -38.60291 -37.07092 -36.06314 -34.75021 -32.69000 -32.16739 -31.17218 -30.13366 -27.37699 -25.15191 -24.42465 -23.83673 -23.05787 -22.36040 -20.24179 -19.32952 -19.20618 -18.05363 -17.14098 -16.93851 -16.56972 -15.82968 -15.72139 -15.28479 -14.95331 -14.79258 -14.72091 -14.17626 -13.79912 -13.64354 -13.56456 -13.38475 -13.14373 -12.94197 -12.75432 -12.52211 -12.44900 -12.12202 -11.99510 -11.88585 -11.59060 -11.36760 -11.08619 -10.28509 -9.74184 -9.60054 -9.41418 -8.85300 -6.63956 -0.47626 0.29539 0.37755 0.85713 1.38537 1.51391 1.67163 1.70420 1.79685 1.96932 2.22058 2.26274 2.55996 2.85875 3.12216 3.47772 3.53586 3.72237 3.87919 4.03219 4.12123 4.25250 4.33105 4.47520 4.62893 4.86747 4.88455 4.98029 5.12116 5.24719 5.30296 5.34256 5.51216 5.61827 5.63897 5.82785 5.89248 6.03086 6.05983 6.13205 6.47126 6.59854 6.88877 7.31061 7.77305 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.024315 B = 0.003767 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.270395 B = 7430.921598 C = 8477.940254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C 0.302 3.698 3 C -0.206 4.206 4 C 0.016 3.984 5 C -0.204 4.204 6 C 0.042 3.958 7 C -0.123 4.123 8 C -0.046 4.046 9 C -0.036 4.036 10 N -0.279 5.279 11 N -0.044 5.044 12 N -0.406 5.406 13 H 0.466 0.534 14 C 0.042 3.958 15 C -0.137 4.137 16 C -0.028 4.028 17 C -0.228 4.228 18 C 0.114 3.886 19 C -0.492 4.492 20 H 0.072 0.928 21 C 0.013 3.987 22 N -0.767 5.767 23 Si 1.108 2.892 24 H -0.262 1.262 25 H -0.257 1.257 26 H -0.267 1.267 27 H 0.135 0.865 28 H 0.152 0.848 29 H 0.155 0.845 30 H 0.149 0.851 31 H 0.132 0.868 32 H 0.108 0.892 33 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.499 1.561 5.049 10.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.203 5.203 2 C -0.007 4.007 3 C -0.212 4.212 4 C -0.005 4.005 5 C -0.205 4.205 6 C 0.039 3.961 7 C -0.143 4.143 8 C -0.068 4.068 9 C -0.161 4.161 10 N -0.156 5.156 11 N -0.025 5.025 12 N -0.137 5.137 13 H 0.316 0.684 14 C -0.079 4.079 15 C -0.159 4.159 16 C -0.046 4.046 17 C -0.247 4.247 18 C 0.108 3.892 19 C -0.518 4.518 20 H 0.090 0.910 21 C -0.211 4.211 22 N -0.387 5.387 23 Si 0.924 3.076 24 H -0.186 1.186 25 H -0.181 1.181 26 H -0.192 1.192 27 H 0.152 0.848 28 H 0.170 0.830 29 H 0.172 0.828 30 H 0.167 0.833 31 H 0.149 0.851 32 H 0.126 0.874 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.048 1.563 4.697 9.448 hybrid contribution -0.180 0.172 0.261 0.360 sum 7.868 1.735 4.958 9.460 Atomic orbital electron populations 1.81038 1.13200 1.13482 1.12549 1.25930 0.92891 0.91019 0.90881 1.16879 0.82979 1.12633 1.08699 1.20979 0.93237 0.92606 0.93639 1.17830 0.91625 1.08992 1.02100 1.18667 0.91669 0.92978 0.92835 1.21128 1.01431 0.97149 0.94624 1.20106 0.88985 0.98637 0.99061 1.20267 0.96284 1.02193 0.97324 1.75176 0.94522 1.22054 1.23814 1.77794 1.18842 1.05718 1.00175 1.44749 1.07379 1.36404 1.25184 0.68352 1.19752 0.84716 1.02718 1.00688 1.20069 0.92981 1.02867 0.99976 1.20769 0.99582 0.92474 0.91815 1.20759 0.92892 1.07110 1.03957 1.18795 0.92479 0.87588 0.90331 1.21022 1.03306 1.26170 1.01253 0.90997 1.28453 0.91523 1.04420 0.96656 1.70496 1.21267 1.09260 1.37629 0.83086 0.77396 0.71305 0.75797 1.18609 1.18106 1.19204 0.84758 0.83008 0.82766 0.83307 0.85058 0.87367 0.88773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -23.83 18.54 19.00 0.35 -23.48 16 2 C 0.30 13.18 14.30 88.33 1.26 14.45 16 3 C -0.21 -8.48 5.93 -19.64 -0.12 -8.59 16 4 C 0.02 0.55 9.12 22.76 0.21 0.76 16 5 C -0.20 -6.49 5.88 -19.99 -0.12 -6.61 16 6 C 0.04 1.15 5.88 -19.99 -0.12 1.03 16 7 C -0.12 -2.98 9.33 22.27 0.21 -2.77 16 8 C -0.05 -1.11 10.03 22.20 0.22 -0.89 16 9 C -0.04 -1.00 7.36 39.77 0.29 -0.70 16 10 N -0.28 -8.40 12.42 -52.35 -0.65 -9.05 16 11 N -0.04 -1.17 13.28 37.02 0.49 -0.68 16 12 N -0.41 -8.54 7.08 -51.68 -0.37 -8.91 16 13 H 0.47 5.66 8.96 -219.81 -1.97 3.69 16 14 C 0.04 1.04 7.40 39.03 0.29 1.33 16 15 C -0.14 -3.34 9.43 22.59 0.21 -3.13 16 16 C -0.03 -0.91 9.29 22.18 0.21 -0.70 16 17 C -0.23 -8.99 7.88 22.44 0.18 -8.82 16 18 C 0.11 4.99 5.46 -19.86 -0.11 4.88 16 19 C -0.49 -22.59 8.48 23.30 0.20 -22.39 16 20 H 0.07 3.44 7.45 -2.91 -0.02 3.42 16 21 C 0.01 0.54 4.95 85.37 0.42 0.96 16 22 N -0.77 -33.82 12.31 21.88 0.27 -33.56 16 23 Si 1.11 36.65 30.01 68.60 2.06 38.71 16 24 H -0.26 -8.39 7.11 99.48 0.71 -7.68 16 25 H -0.26 -7.99 7.11 99.48 0.71 -7.29 16 26 H -0.27 -8.65 7.11 99.48 0.71 -7.95 16 27 H 0.13 3.81 6.10 -2.91 -0.02 3.79 16 28 H 0.15 3.13 6.10 -2.91 -0.02 3.12 16 29 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 30 H 0.15 3.01 6.10 -2.91 -0.02 2.99 16 31 H 0.13 3.47 6.07 -2.91 -0.02 3.46 16 32 H 0.11 4.40 6.48 -2.91 -0.02 4.38 16 33 H 0.30 13.42 6.68 -92.71 -0.62 12.81 16 Total: -1.00 -55.26 297.69 4.79 -50.47 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -0.60 Total: 17.68 kcal Atomic # 6 Polarization: -34.43 SS G_CDS: 3.24 Total: -31.19 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: 0.10 Total: -75.67 kcal Atomic # 14 Polarization: 36.65 SS G_CDS: 2.06 Total: 38.71 kcal Total: -55.26 4.79 -50.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241941421.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.800 kcal (2) G-P(sol) polarization free energy of solvation -55.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.07 seconds