Wall clock time and date at job start Tue Mar 31 2020 07:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31251 * 119.79894 * 2 1 4 4 C 1.33088 * 121.71681 * 180.29087 * 3 2 1 5 5 C 1.47765 * 119.45997 * 179.75086 * 4 3 2 6 6 C 1.39765 * 120.05808 * 359.72432 * 5 4 3 7 7 C 1.37889 * 119.94506 * 179.74384 * 6 5 4 8 8 F 1.35106 * 119.96846 * 180.23495 * 7 6 5 9 9 C 1.39299 * 120.05580 * 0.26128 * 7 6 5 10 10 N 1.39539 * 119.94203 * 179.97438 * 9 7 6 11 11 C 1.39298 * 120.10873 * 359.97438 * 9 7 6 12 12 F 1.35100 * 119.96894 * 179.97438 * 11 9 7 13 13 C 1.37876 * 120.05999 * 0.02562 * 11 9 7 14 14 C 1.40011 * 121.08022 * 359.47684 * 4 3 2 15 15 C 1.36525 * 119.46272 * 0.24997 * 14 4 3 16 16 C 1.40962 * 119.79650 * 179.77130 * 2 1 3 17 17 C 1.41008 * 120.54489 * 359.95245 * 16 2 1 18 18 H 1.07994 * 119.99930 * 334.60481 * 17 16 2 19 19 C 1.39973 * 119.99716 * 154.60678 * 17 16 2 20 20 N 1.30824 * 120.00420 * 343.57543 * 19 17 16 21 21 Si 1.86797 * 119.99942 * 163.58488 * 19 17 16 22 22 H 1.48503 * 109.47526 * 94.77423 * 21 19 17 23 23 H 1.48503 * 109.47284 * 214.77960 * 21 19 17 24 24 H 1.48509 * 109.47137 * 334.77479 * 21 19 17 25 25 H 1.09007 * 109.47084 * 270.23282 * 1 2 3 26 26 H 1.09000 * 109.47399 * 30.23049 * 1 2 3 27 27 H 1.08996 * 109.47388 * 150.23257 * 1 2 3 28 28 H 1.08002 * 120.02600 * 0.02982 * 6 5 4 29 29 H 0.97003 * 120.00502 * 0.02562 * 10 9 7 30 30 H 0.96998 * 120.00363 * 179.97438 * 10 9 7 31 31 H 1.08001 * 120.02918 * 179.97438 * 13 11 9 32 32 H 1.07995 * 120.26954 * 180.23264 * 14 4 3 33 33 H 1.08007 * 120.78710 * 179.97438 * 15 14 4 34 34 H 0.96998 * 120.00701 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1592 1.1390 0.0000 4 6 3.4894 1.1835 -0.0057 5 6 4.1726 2.4937 -0.0110 6 6 3.4237 3.6738 -0.0158 7 6 4.0637 4.8951 -0.0154 8 9 3.3402 6.0362 -0.0152 9 6 5.4554 4.9535 -0.0158 10 7 6.1006 6.1908 -0.0159 11 6 6.2041 3.7788 -0.0160 12 9 7.5538 3.8388 -0.0168 13 6 5.5690 2.5551 -0.0164 14 6 4.2519 0.0093 -0.0011 15 6 3.6207 -1.2013 0.0043 16 6 2.2074 -1.2232 0.0049 17 6 1.5097 -2.4486 0.0108 18 1 0.5086 -2.4980 0.4128 19 6 2.1147 -3.6009 -0.5044 20 7 3.1699 -3.4988 -1.2710 21 14 1.4152 -5.2845 -0.0977 22 1 0.4899 -5.7105 -1.1783 23 1 2.5236 -6.2657 0.0203 24 1 0.6759 -5.2159 1.1885 25 1 -0.3634 0.0042 1.0277 26 1 -0.3634 0.8879 -0.5174 27 1 -0.3634 -0.8920 -0.5102 28 1 2.3446 3.6290 -0.0152 29 1 5.5800 7.0093 -0.0154 30 1 7.0697 6.2325 -0.0157 31 1 6.1499 1.6446 -0.0169 32 1 5.3306 0.0607 -0.0021 33 1 4.1879 -2.1205 0.0075 34 1 3.5889 -4.2973 -1.6283 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242839196.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:52 Heat of formation + Delta-G solvation = -52.070195 kcal Electronic energy + Delta-G solvation = -21729.780913 eV Core-core repulsion = 18069.331977 eV Total energy + Delta-G solvation = -3660.448936 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.65556 -48.61256 -39.11136 -37.96781 -34.91093 -34.02402 -31.85660 -30.88149 -29.85357 -28.39377 -27.02453 -24.94557 -22.78800 -22.59241 -20.81258 -20.22886 -17.74225 -17.57675 -17.48696 -16.75679 -15.79260 -15.73500 -15.27569 -14.98294 -14.97189 -14.77884 -14.51518 -14.29454 -13.70925 -13.25792 -12.79304 -12.30236 -12.19432 -12.14058 -11.84027 -11.65562 -11.50959 -11.46650 -11.30342 -11.06874 -10.96320 -10.74361 -10.32993 -9.90298 -9.53170 -8.43078 -8.39223 -8.15192 -7.93419 -7.14299 -6.91355 -4.60232 1.33242 1.40910 2.54313 2.86367 2.91359 2.95332 3.04781 3.68739 3.79357 3.89954 4.14649 4.51135 4.79943 4.98738 5.14881 5.48367 5.63182 5.79732 5.93318 6.11238 6.20628 6.29116 6.39704 6.45822 6.58569 6.60591 6.74704 6.81234 6.92433 7.00345 7.07909 7.22839 7.44125 7.60362 7.67830 7.70640 7.80873 8.23923 8.44349 8.54621 9.49126 9.81568 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.028561 B = 0.003808 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.115788 B = 7350.987694 C = 8248.624351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.010 3.990 3 N -0.445 5.445 4 C -0.002 4.002 5 C 0.024 3.976 6 C -0.107 4.107 7 C 0.045 3.955 8 F -0.143 7.143 9 C 0.128 3.872 10 N -0.875 5.875 11 C 0.047 3.953 12 F -0.143 7.143 13 C -0.130 4.130 14 C -0.123 4.123 15 C -0.142 4.142 16 C 0.075 3.925 17 C -0.427 4.427 18 H 0.090 0.910 19 C 0.071 3.929 20 N -0.774 5.774 21 Si 0.914 3.086 22 H -0.267 1.267 23 H -0.273 1.273 24 H -0.257 1.257 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.148 0.852 29 H 0.401 0.599 30 H 0.401 0.599 31 H 0.140 0.860 32 H 0.102 0.898 33 H 0.127 0.873 34 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.350 7.671 1.520 8.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.136 4.136 3 N -0.153 5.153 4 C -0.136 4.136 5 C 0.021 3.979 6 C -0.127 4.127 7 C 0.022 3.978 8 F -0.122 7.122 9 C 0.024 3.976 10 N -0.417 5.417 11 C 0.024 3.976 12 F -0.122 7.122 13 C -0.150 4.150 14 C -0.143 4.143 15 C -0.166 4.166 16 C 0.070 3.930 17 C -0.455 4.455 18 H 0.108 0.892 19 C -0.150 4.150 20 N -0.397 5.397 21 Si 0.738 3.262 22 H -0.192 1.192 23 H -0.197 1.197 24 H -0.180 1.180 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.166 0.834 29 H 0.230 0.770 30 H 0.229 0.771 31 H 0.158 0.842 32 H 0.120 0.880 33 H 0.144 0.856 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.083 8.296 1.370 8.956 hybrid contribution 0.731 -1.068 0.026 1.294 sum 3.813 7.228 1.396 8.291 Atomic orbital electron populations 1.20267 0.90920 1.01333 1.00459 1.20987 0.95152 0.87894 1.09564 1.66705 1.08470 1.30518 1.09641 1.18450 0.89091 0.89953 1.16084 1.18029 0.90498 0.92002 0.97332 1.21128 1.01819 0.89101 1.00684 1.16735 0.86358 0.82569 1.12174 1.91418 1.77305 1.48593 1.94882 1.17499 0.90372 0.86467 1.03307 1.41956 1.09201 1.04172 1.86404 1.16568 0.76401 0.92317 1.12350 1.91416 1.28766 1.97106 1.94913 1.21026 0.94639 0.96043 1.03301 1.21270 0.98582 0.93375 1.01113 1.21288 0.94664 0.96645 1.04050 1.18432 0.92556 0.93188 0.88845 1.19717 1.01750 0.91873 1.32201 0.89173 1.26107 0.94179 1.02171 0.92515 1.69789 1.16894 1.32584 1.20423 0.86174 0.79664 0.79961 0.80423 1.19150 1.19735 1.18006 0.93240 0.93071 0.91433 0.83442 0.77040 0.77068 0.84189 0.88001 0.85555 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.43 9.57 36.00 0.34 -1.08 16 2 C 0.01 0.24 6.86 -81.81 -0.56 -0.32 16 3 N -0.45 -10.44 9.29 -5.41 -0.05 -10.49 16 4 C 0.00 -0.05 6.74 -82.76 -0.56 -0.61 16 5 C 0.02 0.47 5.88 -104.86 -0.62 -0.14 16 6 C -0.11 -1.95 9.54 -39.14 -0.37 -2.32 16 7 C 0.05 0.74 7.30 -39.31 -0.29 0.46 16 8 F -0.14 -2.23 16.62 2.25 0.04 -2.19 16 9 C 0.13 1.95 6.77 -83.56 -0.57 1.38 16 10 N -0.88 -10.25 9.08 32.54 0.30 -9.95 16 11 C 0.05 0.76 7.30 -39.32 -0.29 0.47 16 12 F -0.14 -2.15 16.62 2.25 0.04 -2.11 16 13 C -0.13 -2.23 9.38 -39.14 -0.37 -2.60 16 14 C -0.12 -2.74 9.38 -39.54 -0.37 -3.11 16 15 C -0.14 -3.43 8.73 -39.02 -0.34 -3.77 16 16 C 0.07 1.84 5.58 -106.64 -0.59 1.25 16 17 C -0.43 -10.10 8.13 -37.88 -0.31 -10.41 16 18 H 0.09 2.00 6.87 -52.49 -0.36 1.64 16 19 C 0.07 1.60 5.18 -17.33 -0.09 1.51 16 20 N -0.77 -18.07 10.96 55.55 0.61 -17.46 16 21 Si 0.91 16.68 29.59 -169.99 -5.03 11.65 16 22 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 23 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 24 H -0.26 -4.65 7.11 56.52 0.40 -4.24 16 25 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.07 1.30 6.77 -51.93 -0.35 0.95 16 28 H 0.15 2.74 7.51 -52.49 -0.39 2.35 16 29 H 0.40 4.06 8.30 -40.82 -0.34 3.72 16 30 H 0.40 4.02 8.30 -40.82 -0.34 3.68 16 31 H 0.14 2.26 6.14 -52.49 -0.32 1.93 16 32 H 0.10 1.98 6.14 -52.49 -0.32 1.66 16 33 H 0.13 3.08 6.27 -52.48 -0.33 2.75 16 34 H 0.29 6.06 8.30 -40.82 -0.34 5.72 16 LS Contribution 300.68 15.07 4.53 4.53 Total: -1.00 -25.81 300.68 -7.28 -33.09 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -2.74 Total: 12.23 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -4.97 Total: -19.30 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.85 Total: -37.90 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.07 Total: -4.30 kcal Atomic # 14 Polarization: 16.68 SS G_CDS: -5.03 Total: 11.65 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -25.81 -7.28 -33.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242839196.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.976 kcal (2) G-P(sol) polarization free energy of solvation -25.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds