Wall clock time and date at job start Tue Mar 31 2020 07:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31251 * 119.79894 * 2 1 4 4 C 1.33088 * 121.71681 * 180.29087 * 3 2 1 5 5 C 1.47765 * 119.45997 * 179.75086 * 4 3 2 6 6 C 1.39765 * 120.05808 * 359.72432 * 5 4 3 7 7 C 1.37889 * 119.94506 * 179.74384 * 6 5 4 8 8 F 1.35106 * 119.96846 * 180.23495 * 7 6 5 9 9 C 1.39299 * 120.05580 * 0.26128 * 7 6 5 10 10 N 1.39539 * 119.94203 * 179.97438 * 9 7 6 11 11 C 1.39298 * 120.10873 * 359.97438 * 9 7 6 12 12 F 1.35100 * 119.96894 * 179.97438 * 11 9 7 13 13 C 1.37876 * 120.05999 * 0.02562 * 11 9 7 14 14 C 1.40011 * 121.08022 * 359.47684 * 4 3 2 15 15 C 1.36525 * 119.46272 * 0.24997 * 14 4 3 16 16 C 1.40962 * 119.79650 * 179.77130 * 2 1 3 17 17 C 1.41008 * 120.54489 * 359.95245 * 16 2 1 18 18 H 1.07994 * 119.99930 * 334.60481 * 17 16 2 19 19 C 1.39973 * 119.99716 * 154.60678 * 17 16 2 20 20 N 1.30824 * 120.00420 * 343.57543 * 19 17 16 21 21 Si 1.86797 * 119.99942 * 163.58488 * 19 17 16 22 22 H 1.48503 * 109.47526 * 94.77423 * 21 19 17 23 23 H 1.48503 * 109.47284 * 214.77960 * 21 19 17 24 24 H 1.48509 * 109.47137 * 334.77479 * 21 19 17 25 25 H 1.09007 * 109.47084 * 270.23282 * 1 2 3 26 26 H 1.09000 * 109.47399 * 30.23049 * 1 2 3 27 27 H 1.08996 * 109.47388 * 150.23257 * 1 2 3 28 28 H 1.08002 * 120.02600 * 0.02982 * 6 5 4 29 29 H 0.97003 * 120.00502 * 0.02562 * 10 9 7 30 30 H 0.96998 * 120.00363 * 179.97438 * 10 9 7 31 31 H 1.08001 * 120.02918 * 179.97438 * 13 11 9 32 32 H 1.07995 * 120.26954 * 180.23264 * 14 4 3 33 33 H 1.08007 * 120.78710 * 179.97438 * 15 14 4 34 34 H 0.96998 * 120.00701 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1592 1.1390 0.0000 4 6 3.4894 1.1835 -0.0057 5 6 4.1726 2.4937 -0.0110 6 6 3.4237 3.6738 -0.0158 7 6 4.0637 4.8951 -0.0154 8 9 3.3402 6.0362 -0.0152 9 6 5.4554 4.9535 -0.0158 10 7 6.1006 6.1908 -0.0159 11 6 6.2041 3.7788 -0.0160 12 9 7.5538 3.8388 -0.0168 13 6 5.5690 2.5551 -0.0164 14 6 4.2519 0.0093 -0.0011 15 6 3.6207 -1.2013 0.0043 16 6 2.2074 -1.2232 0.0049 17 6 1.5097 -2.4486 0.0108 18 1 0.5086 -2.4980 0.4128 19 6 2.1147 -3.6009 -0.5044 20 7 3.1699 -3.4988 -1.2710 21 14 1.4152 -5.2845 -0.0977 22 1 0.4899 -5.7105 -1.1783 23 1 2.5236 -6.2657 0.0203 24 1 0.6759 -5.2159 1.1885 25 1 -0.3634 0.0042 1.0277 26 1 -0.3634 0.8879 -0.5174 27 1 -0.3634 -0.8920 -0.5102 28 1 2.3446 3.6290 -0.0152 29 1 5.5800 7.0093 -0.0154 30 1 7.0697 6.2325 -0.0157 31 1 6.1499 1.6446 -0.0169 32 1 5.3306 0.0607 -0.0021 33 1 4.1879 -2.1205 0.0075 34 1 3.5889 -4.2973 -1.6283 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242839196.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:51 Heat of formation + Delta-G solvation = -65.419960 kcal Electronic energy + Delta-G solvation = -21730.359803 eV Core-core repulsion = 18069.331977 eV Total energy + Delta-G solvation = -3661.027826 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.90220 -49.88243 -40.70636 -39.44313 -36.36468 -35.53279 -33.48787 -32.57509 -31.24224 -29.80512 -28.70124 -26.53616 -24.20439 -24.10752 -22.40381 -21.85521 -19.32462 -18.99909 -18.77370 -18.04747 -17.38410 -17.00696 -16.70193 -16.29031 -16.22677 -16.16647 -16.07875 -15.69052 -15.27726 -14.94630 -14.36810 -13.72475 -13.66512 -13.53751 -13.50504 -13.26437 -12.96913 -12.93127 -12.70966 -12.63062 -12.53355 -12.19789 -11.75194 -11.58590 -11.16229 -10.17709 -9.91906 -9.76101 -9.51104 -8.77001 -8.35728 -6.36133 -0.09726 0.05540 0.92230 1.13195 1.41738 1.52104 1.57919 2.17436 2.42240 2.64405 2.86186 2.89056 3.43983 3.62071 3.70817 3.73202 4.19269 4.26478 4.51101 4.59527 4.72182 4.76779 4.81371 4.95145 5.02195 5.06985 5.12061 5.18244 5.27952 5.50555 5.54978 5.69016 5.85067 5.97824 6.04639 6.29299 6.48711 6.71220 6.76102 6.79190 7.72578 8.18540 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.028561 B = 0.003808 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.115788 B = 7350.987694 C = 8248.624351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.012 4.012 3 N -0.460 5.460 4 C -0.004 4.004 5 C -0.007 4.007 6 C -0.105 4.105 7 C 0.040 3.960 8 F -0.137 7.137 9 C 0.152 3.848 10 N -0.856 5.856 11 C 0.044 3.956 12 F -0.134 7.134 13 C -0.118 4.118 14 C -0.131 4.131 15 C -0.162 4.162 16 C 0.045 3.955 17 C -0.455 4.455 18 H 0.096 0.904 19 C 0.035 3.965 20 N -0.808 5.808 21 Si 0.986 3.014 22 H -0.261 1.261 23 H -0.267 1.267 24 H -0.254 1.254 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.137 0.863 29 H 0.412 0.588 30 H 0.413 0.587 31 H 0.149 0.851 32 H 0.126 0.874 33 H 0.116 0.884 34 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.110 8.863 1.753 9.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.158 4.158 3 N -0.168 5.168 4 C -0.138 4.138 5 C -0.010 4.010 6 C -0.125 4.125 7 C 0.016 3.984 8 F -0.116 7.116 9 C 0.045 3.955 10 N -0.399 5.399 11 C 0.020 3.980 12 F -0.113 7.113 13 C -0.139 4.139 14 C -0.151 4.151 15 C -0.187 4.187 16 C 0.040 3.960 17 C -0.483 4.483 18 H 0.114 0.886 19 C -0.183 4.183 20 N -0.432 5.432 21 Si 0.806 3.194 22 H -0.185 1.185 23 H -0.192 1.192 24 H -0.177 1.177 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.155 0.845 29 H 0.243 0.757 30 H 0.244 0.756 31 H 0.166 0.834 32 H 0.144 0.856 33 H 0.134 0.866 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.856 9.543 1.603 10.417 hybrid contribution 0.661 -1.127 -0.056 1.307 sum 4.517 8.416 1.547 9.676 Atomic orbital electron populations 1.20252 0.88773 1.01800 1.01440 1.21543 0.96900 0.87785 1.09530 1.66804 1.09113 1.30458 1.10449 1.18977 0.89081 0.91447 1.14300 1.17892 0.91375 0.90975 1.00768 1.21050 1.01413 0.89668 1.00411 1.16576 0.86818 0.82173 1.12877 1.91435 1.77287 1.47985 1.94874 1.17507 0.89945 0.87515 1.00568 1.42021 1.10094 1.03401 1.84360 1.16440 0.76803 0.92042 1.12722 1.91445 1.27989 1.97036 1.94853 1.21077 0.93822 0.97112 1.01855 1.21523 0.99931 0.92864 1.00778 1.21340 0.94943 0.96995 1.05397 1.18773 0.93091 0.94218 0.89934 1.19946 1.02380 0.92469 1.33522 0.88608 1.26922 0.94259 1.05410 0.91698 1.69833 1.18166 1.33906 1.21303 0.85108 0.78944 0.75175 0.80143 1.18549 1.19195 1.17747 0.91905 0.92120 0.91296 0.84471 0.75693 0.75623 0.83384 0.85588 0.86571 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.61 9.57 71.23 0.68 -1.93 16 2 C -0.01 -0.60 6.86 43.31 0.30 -0.31 16 3 N -0.46 -22.01 9.29 -171.02 -1.59 -23.60 16 4 C 0.00 -0.17 6.74 41.90 0.28 0.12 16 5 C -0.01 -0.27 5.88 -20.02 -0.12 -0.38 16 6 C -0.11 -3.75 9.54 22.56 0.22 -3.53 16 7 C 0.04 1.22 7.30 22.44 0.16 1.38 16 8 F -0.14 -3.94 16.62 44.97 0.75 -3.19 16 9 C 0.15 4.16 6.77 38.43 0.26 4.42 16 10 N -0.86 -16.77 9.08 -50.98 -0.46 -17.23 16 11 C 0.04 1.29 7.30 22.44 0.16 1.45 16 12 F -0.13 -3.61 16.62 44.97 0.75 -2.86 16 13 C -0.12 -3.89 9.38 22.56 0.21 -3.68 16 14 C -0.13 -5.95 9.38 22.30 0.21 -5.75 16 15 C -0.16 -8.12 8.73 22.63 0.20 -7.92 16 16 C 0.04 2.28 5.58 -21.17 -0.12 2.16 16 17 C -0.45 -22.12 8.13 23.37 0.19 -21.93 16 18 H 0.10 4.35 6.87 -2.91 -0.02 4.33 16 19 C 0.03 1.59 5.18 85.26 0.44 2.03 16 20 N -0.81 -38.72 10.96 21.83 0.24 -38.48 16 21 Si 0.99 34.27 29.59 68.60 2.03 36.30 16 22 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 23 H -0.27 -8.97 7.11 99.48 0.71 -8.26 16 24 H -0.25 -8.63 7.11 99.48 0.71 -7.92 16 25 H 0.06 2.29 8.14 -2.38 -0.02 2.28 16 26 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.07 2.69 6.77 -2.39 -0.02 2.67 16 28 H 0.14 5.13 7.51 -2.91 -0.02 5.10 16 29 H 0.41 6.71 8.30 -92.71 -0.77 5.95 16 30 H 0.41 6.57 8.30 -92.71 -0.77 5.80 16 31 H 0.15 4.54 6.14 -2.91 -0.02 4.53 16 32 H 0.13 4.90 6.14 -2.91 -0.02 4.88 16 33 H 0.12 5.94 6.27 -2.91 -0.02 5.92 16 34 H 0.29 12.65 8.30 -92.71 -0.77 11.88 16 Total: -1.00 -56.04 300.68 4.45 -51.59 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: -0.34 Total: 31.34 kcal Atomic # 6 Polarization: -36.94 SS G_CDS: 3.08 Total: -33.86 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -1.81 Total: -79.31 kcal Atomic # 9 Polarization: -7.55 SS G_CDS: 1.49 Total: -6.06 kcal Atomic # 14 Polarization: 34.27 SS G_CDS: 2.03 Total: 36.30 kcal Total: -56.04 4.45 -51.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242839196.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.831 kcal (2) G-P(sol) polarization free energy of solvation -56.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds