Wall clock time and date at job start Tue Mar 31 2020 07:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38892 * 119.24270 * 2 1 4 4 C 1.36855 * 119.82029 * 180.02562 * 3 2 1 5 5 C 1.41128 * 118.40757 * 0.02562 * 4 3 2 6 6 C 1.40826 * 120.72603 * 179.97438 * 5 4 3 7 7 H 1.07996 * 120.00087 * 151.32244 * 6 5 4 8 8 C 1.40016 * 119.99900 * 331.32218 * 6 5 4 9 9 N 1.30808 * 120.00231 * 348.56628 * 8 6 5 10 10 Si 1.86801 * 119.99944 * 168.56567 * 8 6 5 11 11 H 1.48499 * 109.46993 * 59.99819 * 10 8 6 12 12 H 1.48496 * 109.47188 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47189 * 299.99989 * 10 8 6 14 14 C 1.41954 * 118.54976 * 359.97438 * 5 4 3 15 15 C 1.47601 * 120.00223 * 179.97438 * 14 5 4 16 16 C 1.39836 * 120.06296 * 136.24989 * 15 14 5 17 17 C 1.37863 * 119.94128 * 179.74703 * 16 15 14 18 18 F 1.35093 * 119.97246 * 180.27335 * 17 16 15 19 19 C 1.39325 * 120.05839 * 0.25351 * 17 16 15 20 20 N 1.39505 * 119.93639 * 179.97438 * 19 17 16 21 21 C 1.39318 * 120.12571 * 0.02563 * 19 17 16 22 22 F 1.35096 * 119.97021 * 179.97438 * 21 19 17 23 23 C 1.37867 * 120.06201 * 359.97438 * 21 19 17 24 24 N 1.31706 * 119.23816 * 180.27148 * 2 1 3 25 25 H 1.09008 * 109.47163 * 89.99790 * 1 2 3 26 26 H 1.08999 * 109.47522 * 209.99772 * 1 2 3 27 27 H 1.09002 * 109.47104 * 330.00416 * 1 2 3 28 28 H 1.08005 * 120.08757 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.79974 * 179.97438 * 4 3 2 30 30 H 0.97005 * 120.00096 * 179.97438 * 9 8 6 31 31 H 1.08002 * 120.02907 * 0.02677 * 16 15 14 32 32 H 0.96998 * 120.00063 * 0.02562 * 20 19 17 33 33 H 0.96999 * 119.99858 * 179.97438 * 20 19 17 34 34 H 1.07997 * 120.03113 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2119 0.0000 4 6 3.5540 1.2257 -0.0005 5 6 4.2379 -0.0088 -0.0016 6 6 5.6455 -0.0516 -0.0027 7 1 6.1606 -0.8883 0.4453 8 6 6.3771 0.9908 -0.5848 9 7 5.7689 1.8862 -1.3191 10 14 8.2217 1.1027 -0.3125 11 1 8.8740 -0.1266 -0.8308 12 1 8.7572 2.2870 -1.0306 13 1 8.5006 1.2361 1.1400 14 6 3.4759 -1.2065 -0.0016 15 6 4.1582 -2.5153 -0.0033 16 6 3.7077 -3.5412 0.8335 17 6 4.3436 -4.7644 0.8261 18 9 3.9056 -5.7577 1.6301 19 6 5.4374 -4.9772 -0.0103 20 7 6.0793 -6.2158 -0.0153 21 6 5.8920 -3.9551 -0.8407 22 9 6.9532 -4.1648 -1.6500 23 6 5.2599 -2.7299 -0.8374 24 7 2.1503 -1.1492 -0.0054 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6346 2.1409 0.0004 29 1 4.0976 2.1589 -0.0010 30 1 6.2757 2.6086 -1.7220 31 1 2.8596 -3.3769 1.4816 32 1 5.7638 -6.9280 0.5628 33 1 6.8407 -6.3651 -0.5975 34 1 5.6130 -1.9378 -1.4810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242839811.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:55 Heat of formation + Delta-G solvation = -51.503423 kcal Electronic energy + Delta-G solvation = -22387.830975 eV Core-core repulsion = 18727.406616 eV Total energy + Delta-G solvation = -3660.424359 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.48855 -48.42004 -39.06514 -37.81530 -34.65950 -34.25501 -31.49383 -30.84729 -29.74158 -28.26355 -27.44447 -24.45282 -22.66811 -22.47769 -20.80453 -20.36694 -17.63713 -17.46851 -17.28349 -16.64163 -15.73334 -15.51022 -15.20328 -14.83905 -14.79625 -14.65510 -14.28282 -14.16415 -13.90051 -13.25469 -12.69268 -12.23156 -12.22445 -11.99102 -11.80188 -11.61382 -11.54079 -11.30099 -11.15229 -11.05619 -11.01540 -10.62798 -10.27274 -9.89034 -9.46323 -8.40467 -8.19369 -8.15546 -7.70957 -7.07652 -6.86146 -4.58511 1.58231 1.61768 2.53591 2.87106 2.96195 2.99727 3.10329 3.76944 3.91989 4.07584 4.31612 4.46067 4.98541 5.20393 5.24195 5.49641 5.84230 5.88923 6.01311 6.13944 6.23145 6.31620 6.37121 6.46463 6.50402 6.64369 6.72844 6.90713 6.94774 7.12928 7.16171 7.20830 7.57387 7.61572 7.75931 7.79779 7.84167 8.29093 8.52107 8.57975 9.49159 9.93034 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.011407 B = 0.007668 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.114747 B = 3650.473224 C = 5700.215290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.004 4.004 3 C -0.143 4.143 4 C -0.123 4.123 5 C 0.086 3.914 6 C -0.441 4.441 7 H 0.089 0.911 8 C 0.074 3.926 9 N -0.788 5.788 10 Si 0.909 3.091 11 H -0.260 1.260 12 H -0.276 1.276 13 H -0.261 1.261 14 C 0.017 3.983 15 C 0.025 3.975 16 C -0.102 4.102 17 C 0.033 3.967 18 F -0.146 7.146 19 C 0.139 3.861 20 N -0.875 5.875 21 C 0.035 3.965 22 F -0.143 7.143 23 C -0.087 4.087 24 N -0.448 5.448 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.100 0.900 29 H 0.129 0.871 30 H 0.286 0.714 31 H 0.137 0.863 32 H 0.400 0.600 33 H 0.401 0.599 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.732 -6.341 1.421 6.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.146 4.146 3 C -0.163 4.163 4 C -0.148 4.148 5 C 0.081 3.919 6 C -0.470 4.470 7 H 0.107 0.893 8 C -0.145 4.145 9 N -0.412 5.412 10 Si 0.733 3.267 11 H -0.184 1.184 12 H -0.201 1.201 13 H -0.185 1.185 14 C -0.121 4.121 15 C 0.022 3.978 16 C -0.123 4.123 17 C 0.009 3.991 18 F -0.125 7.125 19 C 0.034 3.966 20 N -0.417 5.417 21 C 0.011 3.989 22 F -0.122 7.122 23 C -0.107 4.107 24 N -0.156 5.156 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.118 0.882 29 H 0.146 0.854 30 H 0.097 0.903 31 H 0.155 0.845 32 H 0.229 0.771 33 H 0.229 0.771 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.309 -6.879 1.256 6.999 hybrid contribution 1.641 0.498 -0.005 1.715 sum 1.950 -6.380 1.252 6.788 Atomic orbital electron populations 1.20296 0.91449 1.00907 1.00588 1.20266 0.94880 0.88483 1.11004 1.21276 0.95463 0.97173 1.02382 1.21435 0.92578 0.98889 1.01945 1.18316 0.94058 0.90758 0.88758 1.19570 0.91029 1.05073 1.31336 0.89339 1.25985 1.01681 0.94070 0.92791 1.69740 1.38920 1.10962 1.21561 0.86308 0.81319 0.79088 0.80007 1.18401 1.20083 1.18535 1.19177 0.88359 0.90636 1.13920 1.17760 0.93712 0.92006 0.94296 1.21117 1.00288 0.90605 1.00252 1.16623 0.98025 0.87222 0.97241 1.91397 1.89074 1.60262 1.71737 1.17546 0.94301 0.87427 0.97331 1.41962 1.37645 1.11660 1.50419 1.16677 0.90817 0.94321 0.97057 1.91412 1.54102 1.95391 1.71320 1.21382 0.95221 0.94753 0.99328 1.66845 1.09441 1.29335 1.09999 0.93102 0.92527 0.92855 0.88230 0.85351 0.90276 0.84523 0.77130 0.77058 0.82845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.15 36.01 0.37 -0.93 16 2 C 0.00 -0.09 6.79 -82.40 -0.56 -0.65 16 3 C -0.14 -3.14 9.64 -39.84 -0.38 -3.53 16 4 C -0.12 -2.95 8.71 -38.99 -0.34 -3.29 16 5 C 0.09 2.12 5.54 -106.40 -0.59 1.53 16 6 C -0.44 -10.55 6.69 -37.94 -0.25 -10.80 16 7 H 0.09 2.07 6.48 -52.49 -0.34 1.73 16 8 C 0.07 1.70 5.26 -17.32 -0.09 1.60 16 9 N -0.79 -18.57 10.91 55.55 0.61 -17.96 16 10 Si 0.91 17.47 29.58 -169.99 -5.03 12.45 16 11 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 12 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 13 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 14 C 0.02 0.39 6.42 -82.26 -0.53 -0.14 16 15 C 0.03 0.54 5.27 -104.88 -0.55 -0.01 16 16 C -0.10 -1.97 9.63 -39.12 -0.38 -2.35 16 17 C 0.03 0.57 7.30 -39.31 -0.29 0.29 16 18 F -0.15 -2.40 16.62 2.25 0.04 -2.36 16 19 C 0.14 2.32 6.77 -83.56 -0.57 1.76 16 20 N -0.87 -11.38 9.07 32.54 0.30 -11.08 16 21 C 0.03 0.64 7.30 -39.32 -0.29 0.35 16 22 F -0.14 -2.51 16.62 2.25 0.04 -2.48 16 23 C -0.09 -1.76 7.81 -39.12 -0.31 -2.06 16 24 N -0.45 -10.52 10.06 -5.47 -0.05 -10.57 16 25 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 28 H 0.10 1.91 8.06 -52.48 -0.42 1.49 16 29 H 0.13 3.13 6.34 -52.49 -0.33 2.80 16 30 H 0.29 6.17 8.30 -40.82 -0.34 5.84 16 31 H 0.14 2.59 8.06 -52.49 -0.42 2.16 16 32 H 0.40 4.47 8.30 -40.82 -0.34 4.13 16 33 H 0.40 4.57 8.30 -40.82 -0.34 4.23 16 34 H 0.15 3.29 6.72 -52.49 -0.35 2.94 16 LS Contribution 302.35 15.07 4.56 4.56 Total: -1.00 -25.79 302.35 -7.25 -33.05 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -2.95 Total: 12.63 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -4.75 Total: -18.23 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.85 Total: -39.61 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.07 Total: -4.83 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.45 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -25.79 -7.25 -33.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242839811.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.457 kcal (2) G-P(sol) polarization free energy of solvation -25.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds