Wall clock time and date at job start Tue Mar 31 2020 07:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38892 * 119.24270 * 2 1 4 4 C 1.36855 * 119.82029 * 180.02562 * 3 2 1 5 5 C 1.41128 * 118.40757 * 0.02562 * 4 3 2 6 6 C 1.40826 * 120.72603 * 179.97438 * 5 4 3 7 7 H 1.07996 * 120.00087 * 151.32244 * 6 5 4 8 8 C 1.40016 * 119.99900 * 331.32218 * 6 5 4 9 9 N 1.30808 * 120.00231 * 348.56628 * 8 6 5 10 10 Si 1.86801 * 119.99944 * 168.56567 * 8 6 5 11 11 H 1.48499 * 109.46993 * 59.99819 * 10 8 6 12 12 H 1.48496 * 109.47188 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47189 * 299.99989 * 10 8 6 14 14 C 1.41954 * 118.54976 * 359.97438 * 5 4 3 15 15 C 1.47601 * 120.00223 * 179.97438 * 14 5 4 16 16 C 1.39836 * 120.06296 * 136.24989 * 15 14 5 17 17 C 1.37863 * 119.94128 * 179.74703 * 16 15 14 18 18 F 1.35093 * 119.97246 * 180.27335 * 17 16 15 19 19 C 1.39325 * 120.05839 * 0.25351 * 17 16 15 20 20 N 1.39505 * 119.93639 * 179.97438 * 19 17 16 21 21 C 1.39318 * 120.12571 * 0.02563 * 19 17 16 22 22 F 1.35096 * 119.97021 * 179.97438 * 21 19 17 23 23 C 1.37867 * 120.06201 * 359.97438 * 21 19 17 24 24 N 1.31706 * 119.23816 * 180.27148 * 2 1 3 25 25 H 1.09008 * 109.47163 * 89.99790 * 1 2 3 26 26 H 1.08999 * 109.47522 * 209.99772 * 1 2 3 27 27 H 1.09002 * 109.47104 * 330.00416 * 1 2 3 28 28 H 1.08005 * 120.08757 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.79974 * 179.97438 * 4 3 2 30 30 H 0.97005 * 120.00096 * 179.97438 * 9 8 6 31 31 H 1.08002 * 120.02907 * 0.02677 * 16 15 14 32 32 H 0.96998 * 120.00063 * 0.02562 * 20 19 17 33 33 H 0.96999 * 119.99858 * 179.97438 * 20 19 17 34 34 H 1.07997 * 120.03113 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2119 0.0000 4 6 3.5540 1.2257 -0.0005 5 6 4.2379 -0.0088 -0.0016 6 6 5.6455 -0.0516 -0.0027 7 1 6.1606 -0.8883 0.4453 8 6 6.3771 0.9908 -0.5848 9 7 5.7689 1.8862 -1.3191 10 14 8.2217 1.1027 -0.3125 11 1 8.8740 -0.1266 -0.8308 12 1 8.7572 2.2870 -1.0306 13 1 8.5006 1.2361 1.1400 14 6 3.4759 -1.2065 -0.0016 15 6 4.1582 -2.5153 -0.0033 16 6 3.7077 -3.5412 0.8335 17 6 4.3436 -4.7644 0.8261 18 9 3.9056 -5.7577 1.6301 19 6 5.4374 -4.9772 -0.0103 20 7 6.0793 -6.2158 -0.0153 21 6 5.8920 -3.9551 -0.8407 22 9 6.9532 -4.1648 -1.6500 23 6 5.2599 -2.7299 -0.8374 24 7 2.1503 -1.1492 -0.0054 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6346 2.1409 0.0004 29 1 4.0976 2.1589 -0.0010 30 1 6.2757 2.6086 -1.7220 31 1 2.8596 -3.3769 1.4816 32 1 5.7638 -6.9280 0.5628 33 1 6.8407 -6.3651 -0.5975 34 1 5.6130 -1.9378 -1.4810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242839811.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:54 Heat of formation + Delta-G solvation = -65.029946 kcal Electronic energy + Delta-G solvation = -22388.417529 eV Core-core repulsion = 18727.406616 eV Total energy + Delta-G solvation = -3661.010913 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.86767 -49.84832 -40.71819 -39.35463 -36.23024 -35.78538 -33.08922 -32.58379 -31.24920 -29.76485 -29.04297 -26.08905 -24.26354 -23.97683 -22.50377 -21.96963 -19.31694 -18.84031 -18.79877 -18.02997 -17.38447 -16.94791 -16.69221 -16.26820 -16.19746 -16.15019 -15.90952 -15.65030 -15.50552 -14.84828 -14.29845 -13.89168 -13.71379 -13.50036 -13.25906 -13.16972 -13.07808 -12.82290 -12.69135 -12.63201 -12.59103 -12.17013 -11.77898 -11.55381 -11.15767 -10.15657 -9.92817 -9.69206 -9.38785 -8.72064 -8.36200 -6.37070 0.04946 0.11431 0.84951 1.13283 1.38819 1.48276 1.51897 2.17194 2.53503 2.66017 2.73825 2.92103 3.47321 3.66486 3.70483 3.81746 4.30732 4.33981 4.45698 4.65220 4.71734 4.80143 4.83906 4.97643 5.01710 5.09408 5.13491 5.23534 5.33252 5.41034 5.60566 5.73019 5.84813 5.99921 6.08848 6.30646 6.51696 6.75467 6.78296 6.81099 7.73057 8.24404 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.011407 B = 0.007668 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.114747 B = 3650.473224 C = 5700.215290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.013 4.013 3 C -0.147 4.147 4 C -0.144 4.144 5 C 0.056 3.944 6 C -0.459 4.459 7 H 0.085 0.915 8 C 0.040 3.960 9 N -0.817 5.817 10 Si 0.971 3.029 11 H -0.259 1.259 12 H -0.266 1.266 13 H -0.259 1.259 14 C 0.007 3.993 15 C -0.003 4.003 16 C -0.098 4.098 17 C 0.035 3.965 18 F -0.135 7.135 19 C 0.161 3.839 20 N -0.855 5.855 21 C 0.031 3.969 22 F -0.138 7.138 23 C -0.090 4.090 24 N -0.465 5.465 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.127 0.873 29 H 0.118 0.882 30 H 0.292 0.708 31 H 0.136 0.864 32 H 0.413 0.587 33 H 0.412 0.588 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.958 -7.734 1.766 7.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.155 4.155 3 C -0.167 4.167 4 C -0.170 4.170 5 C 0.052 3.948 6 C -0.488 4.488 7 H 0.103 0.897 8 C -0.176 4.176 9 N -0.442 5.442 10 Si 0.792 3.208 11 H -0.184 1.184 12 H -0.190 1.190 13 H -0.183 1.183 14 C -0.130 4.130 15 C -0.006 4.006 16 C -0.118 4.118 17 C 0.011 3.989 18 F -0.114 7.114 19 C 0.053 3.947 20 N -0.397 5.397 21 C 0.007 3.993 22 F -0.117 7.117 23 C -0.111 4.111 24 N -0.174 5.174 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.145 0.855 29 H 0.136 0.864 30 H 0.103 0.897 31 H 0.154 0.846 32 H 0.244 0.756 33 H 0.243 0.757 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.538 -8.314 1.603 8.484 hybrid contribution 1.496 0.802 -0.111 1.701 sum 2.034 -7.511 1.493 7.924 Atomic orbital electron populations 1.20358 0.88058 1.02489 1.01836 1.21076 0.97236 0.88039 1.09182 1.21583 0.94915 0.98642 1.01570 1.21484 0.93681 0.98439 1.03427 1.18647 0.94893 0.91477 0.89811 1.19639 0.91087 1.05758 1.32346 0.89717 1.26676 1.05433 0.93414 0.92102 1.69784 1.40508 1.11608 1.22299 0.85389 0.76404 0.79196 0.79858 1.18359 1.19049 1.18350 1.19575 0.88726 0.91597 1.13141 1.17695 0.94798 0.91859 0.96226 1.21061 1.00227 0.90849 0.99705 1.16448 0.98095 0.86881 0.97521 1.91426 1.88982 1.59589 1.71418 1.17463 0.93446 0.88164 0.95636 1.41991 1.37191 1.10423 1.50132 1.16533 0.91038 0.94063 0.97681 1.91421 1.53773 1.95290 1.71226 1.21178 0.95390 0.95217 0.99271 1.66973 1.09405 1.30124 1.10868 0.91881 0.91981 0.90267 0.85473 0.86438 0.89695 0.84595 0.75579 0.75697 0.84862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.29 10.15 71.24 0.72 -1.56 16 2 C -0.01 -0.58 6.79 42.73 0.29 -0.29 16 3 C -0.15 -6.50 9.64 22.10 0.21 -6.29 16 4 C -0.14 -7.18 8.71 22.65 0.20 -6.98 16 5 C 0.06 2.88 5.54 -21.02 -0.12 2.77 16 6 C -0.46 -22.81 6.69 23.33 0.16 -22.65 16 7 H 0.08 4.12 6.48 -2.91 -0.02 4.10 16 8 C 0.04 1.88 5.26 85.28 0.45 2.33 16 9 N -0.82 -39.64 10.91 21.84 0.24 -39.40 16 10 Si 0.97 36.16 29.58 68.60 2.03 38.19 16 11 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 12 H -0.27 -9.39 7.11 99.48 0.71 -8.69 16 13 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 14 C 0.01 0.34 6.42 42.41 0.27 0.61 16 15 C 0.00 -0.11 5.27 -20.03 -0.11 -0.22 16 16 C -0.10 -3.75 9.63 22.57 0.22 -3.54 16 17 C 0.03 1.16 7.30 22.44 0.16 1.32 16 18 F -0.14 -4.09 16.62 44.97 0.75 -3.35 16 19 C 0.16 5.02 6.77 38.44 0.26 5.28 16 20 N -0.85 -19.38 9.07 -50.97 -0.46 -19.84 16 21 C 0.03 1.10 7.30 22.44 0.16 1.26 16 22 F -0.14 -4.65 16.62 44.97 0.75 -3.90 16 23 C -0.09 -3.72 7.81 22.57 0.18 -3.55 16 24 N -0.46 -22.07 10.06 -171.21 -1.72 -23.79 16 25 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 26 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.08 2.16 8.07 -2.39 -0.02 2.14 16 28 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 29 H 0.12 5.98 6.34 -2.91 -0.02 5.96 16 30 H 0.29 12.88 8.30 -92.70 -0.77 12.11 16 31 H 0.14 5.13 8.06 -2.91 -0.02 5.11 16 32 H 0.41 7.67 8.30 -92.71 -0.77 6.90 16 33 H 0.41 7.96 8.30 -92.71 -0.77 7.19 16 34 H 0.13 5.99 6.72 -2.91 -0.02 5.97 16 Total: -1.00 -56.16 302.35 4.29 -51.87 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: -0.35 Total: 31.72 kcal Atomic # 6 Polarization: -34.55 SS G_CDS: 3.06 Total: -31.49 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -1.95 Total: -83.04 kcal Atomic # 9 Polarization: -8.74 SS G_CDS: 1.49 Total: -7.25 kcal Atomic # 14 Polarization: 36.16 SS G_CDS: 2.03 Total: 38.19 kcal Total: -56.16 4.29 -51.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242839811.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.163 kcal (2) G-P(sol) polarization free energy of solvation -56.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds