Wall clock time and date at job start Tue Mar 31 2020 05:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35509 * 117.00002 * 2 1 4 4 N 1.32333 * 119.09668 * 0.03360 * 3 2 1 5 5 C 1.32422 * 121.03340 * 179.97438 * 4 3 2 6 6 C 1.38531 * 119.23480 * 359.71523 * 5 4 3 7 7 F 1.35093 * 120.81680 * 180.27925 * 6 5 4 8 8 C 1.39954 * 118.35622 * 0.51913 * 6 5 4 9 9 C 1.48126 * 120.53657 * 179.75377 * 8 6 5 10 10 C 1.39383 * 120.17260 * 311.11786 * 9 8 6 11 11 C 1.37958 * 119.93961 * 180.02562 * 10 9 8 12 12 C 1.38475 * 120.28986 * 359.97438 * 11 10 9 13 13 C 1.38088 * 120.33812 * 359.97438 * 12 11 10 14 14 C 1.38776 * 120.05648 * 0.02562 * 13 12 11 15 15 O 1.35626 * 120.14132 * 179.97438 * 14 13 12 16 16 C 1.34813 * 117.00217 * 6.06533 * 15 14 13 17 17 H 1.08003 * 119.99713 * 5.19346 * 16 15 14 18 18 C 1.38660 * 120.00105 * 185.19461 * 16 15 14 19 19 N 1.31543 * 120.00270 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47161 * 60.00145 * 20 18 16 22 22 H 1.48501 * 109.46801 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46908 * 299.99648 * 20 18 16 24 24 N 1.32133 * 119.09786 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.47620 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46826 * 299.99405 * 1 2 3 27 27 H 1.09006 * 109.47558 * 59.99218 * 1 2 3 28 28 H 1.07997 * 120.38127 * 180.02562 * 5 4 3 29 29 H 1.08004 * 120.02366 * 359.97438 * 10 9 8 30 30 H 1.08007 * 119.85394 * 180.02562 * 11 10 9 31 31 H 1.07995 * 119.83264 * 180.02562 * 12 11 10 32 32 H 1.08004 * 119.97079 * 179.74605 * 13 12 11 33 33 H 0.97002 * 120.00040 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 7 1.3060 2.3057 0.0007 5 6 1.8670 3.5053 0.0012 6 6 3.2486 3.6060 0.0071 7 9 3.8544 4.8135 0.0134 8 6 4.0012 2.4261 0.0011 9 6 5.4815 2.4776 0.0014 10 6 6.1542 3.2985 -0.9021 11 6 7.5330 3.3424 -0.8979 12 6 8.2535 2.5742 0.0011 13 6 7.5991 1.7576 0.9021 14 6 6.2125 1.7025 0.9103 15 8 5.5680 0.9006 1.7941 16 6 6.3244 0.2787 2.7207 17 1 7.3804 0.4945 2.7891 18 6 5.7466 -0.6380 3.5858 19 7 4.4603 -0.9005 3.5028 20 14 6.7946 -1.4993 4.8701 21 1 7.4022 -0.4883 5.7723 22 1 5.9453 -2.4241 5.6629 23 1 7.8695 -2.2706 4.1957 24 7 3.3646 1.2558 0.0005 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 1.2544 4.3947 0.0022 29 1 5.5963 3.8991 -1.6054 30 1 8.0528 3.9793 -1.5984 31 1 9.3327 2.6145 -0.0018 32 1 8.1671 1.1578 1.5979 33 1 4.0560 -1.5416 4.1082 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243585735.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:49 Heat of formation + Delta-G solvation = -17.542437 kcal Electronic energy + Delta-G solvation = -22647.260269 eV Core-core repulsion = 18975.935779 eV Total energy + Delta-G solvation = -3671.324490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.085 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.56041 -40.75399 -39.10717 -37.81666 -36.45842 -33.79703 -32.37448 -31.37325 -29.48905 -28.82900 -27.21164 -25.49865 -24.47314 -23.35346 -21.59285 -21.08079 -18.37077 -18.16571 -18.02689 -17.15270 -16.80768 -16.20109 -15.27418 -15.20580 -14.95708 -14.61220 -14.45696 -13.94263 -13.81237 -13.64630 -13.20661 -13.03370 -12.74166 -12.61434 -11.78412 -11.74258 -11.54216 -11.39824 -11.01593 -10.98582 -10.92936 -10.88773 -10.54725 -10.31517 -9.53791 -8.91192 -8.77117 -8.55061 -8.10110 -7.30682 -6.50549 -4.08931 1.01236 1.24656 2.09902 2.31350 2.91857 3.09513 3.11374 3.13631 3.90048 3.99492 4.15549 4.23201 4.52024 4.73872 5.02513 5.03578 5.18328 5.19200 5.38551 5.43758 5.55150 5.69689 5.72337 5.79235 5.98217 6.19572 6.41226 6.57220 6.66237 6.91220 7.03405 7.07033 7.25002 7.28473 7.41183 7.66780 7.89552 8.44039 8.91351 9.59582 10.64322 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.011536 B = 0.007573 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.699909 B = 3696.484003 C = 5617.930930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.280 6.280 3 C 0.498 3.502 4 N -0.564 5.564 5 C 0.155 3.845 6 C -0.052 4.052 7 F -0.122 7.122 8 C 0.274 3.726 9 C -0.160 4.160 10 C -0.031 4.031 11 C -0.221 4.221 12 C -0.053 4.053 13 C -0.234 4.234 14 C 0.186 3.814 15 O -0.143 6.143 16 C -0.398 4.398 17 H 0.094 0.906 18 C 0.045 3.955 19 N -0.841 5.841 20 Si 0.941 3.059 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.268 1.268 24 N -0.466 5.466 25 H 0.100 0.900 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.177 0.823 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.133 0.867 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.130 6.327 -6.269 9.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.181 6.181 3 C 0.196 3.804 4 N -0.295 5.295 5 C -0.010 4.010 6 C -0.077 4.077 7 F -0.100 7.100 8 C 0.127 3.873 9 C -0.163 4.163 10 C -0.050 4.050 11 C -0.240 4.240 12 C -0.071 4.071 13 C -0.253 4.253 14 C 0.128 3.872 15 O -0.043 6.043 16 C -0.474 4.474 17 H 0.111 0.889 18 C -0.163 4.163 19 N -0.473 5.473 20 Si 0.765 3.235 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.193 1.193 24 N -0.189 5.189 25 H 0.118 0.882 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.194 0.806 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.150 0.850 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.018 4.858 -6.078 8.757 hybrid contribution 0.790 0.607 0.734 1.238 sum -3.228 5.465 -5.343 8.297 Atomic orbital electron populations 1.22930 0.76438 1.03223 1.02375 1.86188 1.22652 1.22292 1.86954 1.20665 0.86087 0.84477 0.89175 1.67980 1.40892 0.98372 1.22244 1.22779 0.90406 0.95457 0.92382 1.19198 0.92814 0.82379 1.13336 1.91481 1.83328 1.40759 1.94481 1.20005 0.94145 0.85297 0.87855 1.17234 0.87366 1.07085 1.04601 1.20612 0.94328 0.94780 0.95330 1.20463 0.93301 1.06128 1.04108 1.20905 0.98800 0.93939 0.93497 1.21131 0.93725 1.05865 1.04611 1.19172 0.90453 0.89038 0.88521 1.84047 1.35020 1.49663 1.35550 1.21383 0.93515 1.22809 1.09650 0.88862 1.25342 0.96372 0.96252 0.98284 1.70074 1.10089 1.31251 1.35885 0.85788 0.79032 0.79133 0.79550 1.19408 1.20188 1.19306 1.67936 1.06885 1.27649 1.16476 0.88179 0.92045 0.92305 0.80623 0.86691 0.86939 0.86999 0.84972 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.63 10.36 101.05 1.05 1.68 16 2 O -0.28 -5.59 10.56 -18.22 -0.19 -5.78 16 3 C 0.50 10.53 8.48 -91.40 -0.78 9.75 16 4 N -0.56 -10.11 9.21 -14.75 -0.14 -10.24 16 5 C 0.16 2.46 11.29 -17.19 -0.19 2.27 16 6 C -0.05 -0.95 7.22 -38.83 -0.28 -1.23 16 7 F -0.12 -2.06 15.99 2.25 0.04 -2.03 16 8 C 0.27 5.99 6.06 -82.56 -0.50 5.49 16 9 C -0.16 -3.53 5.52 -104.74 -0.58 -4.11 16 10 C -0.03 -0.57 8.91 -39.26 -0.35 -0.92 16 11 C -0.22 -3.73 10.03 -39.60 -0.40 -4.13 16 12 C -0.05 -0.93 10.03 -39.55 -0.40 -1.33 16 13 C -0.23 -5.00 9.12 -39.44 -0.36 -5.36 16 14 C 0.19 4.56 6.63 -38.71 -0.26 4.31 16 15 O -0.14 -4.09 8.74 0.48 0.00 -4.08 16 16 C -0.40 -11.00 9.44 30.89 0.29 -10.71 16 17 H 0.09 2.35 5.30 -52.48 -0.28 2.07 16 18 C 0.04 1.21 5.49 -17.52 -0.10 1.12 16 19 N -0.84 -24.61 13.67 55.48 0.76 -23.85 16 20 Si 0.94 20.28 29.55 -169.99 -5.02 15.25 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 N -0.47 -11.11 9.82 -11.24 -0.11 -11.22 16 25 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 27 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 28 H 0.18 1.96 8.06 -52.49 -0.42 1.54 16 29 H 0.12 1.83 7.75 -52.48 -0.41 1.42 16 30 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 31 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.13 2.77 5.72 -52.48 -0.30 2.47 16 33 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 303.02 15.07 4.57 4.57 Total: -1.00 -32.66 303.02 -5.59 -38.26 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -2.65 Total: 2.30 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -2.85 Total: -3.18 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 0.51 Total: -45.31 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -0.19 Total: -9.86 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.66 -5.59 -38.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585735.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.716 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds