Wall clock time and date at job start Tue Mar 31 2020 05:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35509 * 117.00002 * 2 1 4 4 N 1.32333 * 119.09668 * 0.03360 * 3 2 1 5 5 C 1.32422 * 121.03340 * 179.97438 * 4 3 2 6 6 C 1.38531 * 119.23480 * 359.71523 * 5 4 3 7 7 F 1.35093 * 120.81680 * 180.27925 * 6 5 4 8 8 C 1.39954 * 118.35622 * 0.51913 * 6 5 4 9 9 C 1.48126 * 120.53657 * 179.75377 * 8 6 5 10 10 C 1.39383 * 120.17260 * 311.11786 * 9 8 6 11 11 C 1.37958 * 119.93961 * 180.02562 * 10 9 8 12 12 C 1.38475 * 120.28986 * 359.97438 * 11 10 9 13 13 C 1.38088 * 120.33812 * 359.97438 * 12 11 10 14 14 C 1.38776 * 120.05648 * 0.02562 * 13 12 11 15 15 O 1.35626 * 120.14132 * 179.97438 * 14 13 12 16 16 C 1.34813 * 117.00217 * 6.06533 * 15 14 13 17 17 H 1.08003 * 119.99713 * 5.19346 * 16 15 14 18 18 C 1.38660 * 120.00105 * 185.19461 * 16 15 14 19 19 N 1.31543 * 120.00270 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47161 * 60.00145 * 20 18 16 22 22 H 1.48501 * 109.46801 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46908 * 299.99648 * 20 18 16 24 24 N 1.32133 * 119.09786 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.47620 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46826 * 299.99405 * 1 2 3 27 27 H 1.09006 * 109.47558 * 59.99218 * 1 2 3 28 28 H 1.07997 * 120.38127 * 180.02562 * 5 4 3 29 29 H 1.08004 * 120.02366 * 359.97438 * 10 9 8 30 30 H 1.08007 * 119.85394 * 180.02562 * 11 10 9 31 31 H 1.07995 * 119.83264 * 180.02562 * 12 11 10 32 32 H 1.08004 * 119.97079 * 179.74605 * 13 12 11 33 33 H 0.97002 * 120.00040 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 7 1.3060 2.3057 0.0007 5 6 1.8670 3.5053 0.0012 6 6 3.2486 3.6060 0.0071 7 9 3.8544 4.8135 0.0134 8 6 4.0012 2.4261 0.0011 9 6 5.4815 2.4776 0.0014 10 6 6.1542 3.2985 -0.9021 11 6 7.5330 3.3424 -0.8979 12 6 8.2535 2.5742 0.0011 13 6 7.5991 1.7576 0.9021 14 6 6.2125 1.7025 0.9103 15 8 5.5680 0.9006 1.7941 16 6 6.3244 0.2787 2.7207 17 1 7.3804 0.4945 2.7891 18 6 5.7466 -0.6380 3.5858 19 7 4.4603 -0.9005 3.5028 20 14 6.7946 -1.4993 4.8701 21 1 7.4022 -0.4883 5.7723 22 1 5.9453 -2.4241 5.6629 23 1 7.8695 -2.2706 4.1957 24 7 3.3646 1.2558 0.0005 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 1.2544 4.3947 0.0022 29 1 5.5963 3.8991 -1.6054 30 1 8.0528 3.9793 -1.5984 31 1 9.3327 2.6145 -0.0018 32 1 8.1671 1.1578 1.5979 33 1 4.0560 -1.5416 4.1082 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243585735.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:48 Heat of formation + Delta-G solvation = -42.185353 kcal Electronic energy + Delta-G solvation = -22648.328866 eV Core-core repulsion = 18975.935779 eV Total energy + Delta-G solvation = -3672.393087 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.085 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.96408 -42.24499 -40.77573 -39.27712 -38.13568 -35.29939 -34.31166 -32.89741 -30.99778 -30.43489 -28.41764 -27.42444 -25.97117 -24.83317 -23.23785 -22.61481 -19.90307 -19.84235 -19.60459 -18.69015 -18.41584 -17.64789 -16.81645 -16.66953 -16.33927 -16.26293 -16.07858 -15.53199 -15.37253 -15.14825 -14.60952 -14.57201 -14.33189 -14.15554 -13.56410 -13.14747 -12.95291 -12.90710 -12.60576 -12.51581 -12.41208 -12.29646 -12.19259 -11.86522 -11.33065 -10.81813 -10.29261 -10.04472 -9.60659 -9.00048 -8.46530 -6.15010 -0.52113 -0.17145 0.54641 0.72899 1.32547 1.44284 1.48880 1.54808 2.14946 2.48346 2.67458 2.79739 2.95115 3.17713 3.28603 3.41099 3.67201 3.82602 4.13546 4.23232 4.33828 4.37269 4.41586 4.58158 4.63202 4.65222 4.93942 5.03904 5.08282 5.15534 5.47194 5.56582 5.65676 5.69438 5.96800 6.00565 6.14793 6.94862 6.95053 7.75570 8.73745 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.011536 B = 0.007573 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.699909 B = 3696.484003 C = 5617.930930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.311 6.311 3 C 0.483 3.517 4 N -0.550 5.550 5 C 0.175 3.825 6 C -0.049 4.049 7 F -0.111 7.111 8 C 0.244 3.756 9 C -0.174 4.174 10 C -0.035 4.035 11 C -0.193 4.193 12 C -0.045 4.045 13 C -0.251 4.251 14 C 0.148 3.852 15 O -0.199 6.199 16 C -0.421 4.421 17 H 0.105 0.895 18 C -0.017 4.017 19 N -0.905 5.905 20 Si 1.017 2.983 21 H -0.256 1.256 22 H -0.274 1.274 23 H -0.256 1.256 24 N -0.520 5.520 25 H 0.127 0.873 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.234 0.766 29 H 0.144 0.856 30 H 0.162 0.838 31 H 0.156 0.844 32 H 0.126 0.874 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.169 8.825 -7.708 11.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.213 6.213 3 C 0.181 3.819 4 N -0.281 5.281 5 C 0.009 3.991 6 C -0.074 4.074 7 F -0.090 7.090 8 C 0.098 3.902 9 C -0.177 4.177 10 C -0.054 4.054 11 C -0.211 4.211 12 C -0.063 4.063 13 C -0.271 4.271 14 C 0.093 3.907 15 O -0.102 6.102 16 C -0.497 4.497 17 H 0.122 0.878 18 C -0.217 4.217 19 N -0.541 5.541 20 Si 0.836 3.164 21 H -0.180 1.180 22 H -0.198 1.198 23 H -0.180 1.180 24 N -0.244 5.244 25 H 0.145 0.855 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.251 0.749 29 H 0.162 0.838 30 H 0.180 0.820 31 H 0.173 0.827 32 H 0.144 0.856 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.021 7.400 -7.565 11.005 hybrid contribution 0.505 0.135 0.862 1.008 sum -2.516 7.535 -6.703 10.394 Atomic orbital electron populations 1.23294 0.73516 1.05406 1.03212 1.86147 1.25689 1.22623 1.86866 1.20858 0.85841 0.85591 0.89632 1.68132 1.39967 0.98298 1.21658 1.23692 0.89953 0.96326 0.89136 1.19157 0.93524 0.81636 1.13049 1.91501 1.83360 1.39760 1.94379 1.20244 0.94514 0.86251 0.89178 1.17787 0.88224 1.07064 1.04582 1.21060 0.95453 0.94207 0.94715 1.21113 0.92711 1.04313 1.02997 1.21394 1.01051 0.92066 0.91785 1.21307 0.92717 1.07116 1.05916 1.19854 0.92205 0.89328 0.89268 1.84036 1.36194 1.52415 1.37563 1.21874 0.94168 1.23246 1.10441 0.87821 1.26597 0.97690 0.96848 1.00538 1.70249 1.12426 1.33367 1.38067 0.84687 0.77233 0.78000 0.76523 1.18016 1.19846 1.18024 1.67784 1.08770 1.29510 1.18372 0.85477 0.92006 0.90464 0.74948 0.83786 0.82008 0.82672 0.85635 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.10 10.36 113.37 1.17 2.27 16 2 O -0.31 -12.98 10.56 -88.11 -0.93 -13.91 16 3 C 0.48 21.06 8.48 180.62 1.53 22.59 16 4 N -0.55 -19.20 9.21 -313.49 -2.89 -22.09 16 5 C 0.17 5.12 11.29 84.67 0.96 6.08 16 6 C -0.05 -1.72 7.22 22.76 0.16 -1.56 16 7 F -0.11 -3.49 15.99 44.97 0.72 -2.77 16 8 C 0.24 10.90 6.06 41.98 0.25 11.15 16 9 C -0.17 -7.76 5.52 -19.94 -0.11 -7.87 16 10 C -0.04 -1.21 8.91 22.48 0.20 -1.01 16 11 C -0.19 -5.65 10.03 22.26 0.22 -5.42 16 12 C -0.04 -1.44 10.03 22.29 0.22 -1.22 16 13 C -0.25 -10.79 9.12 22.36 0.20 -10.59 16 14 C 0.15 7.52 6.63 22.84 0.15 7.67 16 15 O -0.20 -12.14 8.74 -21.20 -0.19 -12.33 16 16 C -0.42 -24.82 9.44 67.92 0.64 -24.18 16 17 H 0.10 5.52 5.30 -2.91 -0.02 5.51 16 18 C -0.02 -1.01 5.49 84.84 0.47 -0.54 16 19 N -0.91 -56.89 13.67 21.61 0.30 -56.59 16 20 Si 1.02 43.43 29.55 68.60 2.03 45.46 16 21 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 22 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 23 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 24 N -0.52 -26.04 9.82 -302.50 -2.97 -29.01 16 25 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 26 H 0.06 1.66 8.09 -2.39 -0.02 1.64 16 27 H 0.08 1.78 8.09 -2.38 -0.02 1.76 16 28 H 0.23 4.02 8.06 -2.91 -0.02 4.00 16 29 H 0.14 4.04 7.75 -2.91 -0.02 4.02 16 30 H 0.16 3.27 8.06 -2.91 -0.02 3.24 16 31 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 32 H 0.13 5.42 5.72 -2.91 -0.02 5.40 16 33 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -80.06 303.02 3.32 -76.74 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 1.17 Total: 17.13 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 6.08 Total: -2.63 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -5.56 Total: -107.69 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -1.12 Total: -26.24 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.72 Total: -2.77 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -80.06 3.32 -76.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585735.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.557 kcal (2) G-P(sol) polarization free energy of solvation -80.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds