Wall clock time and date at job start Tue Mar 31 2020 08:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86805 * 119.99656 * 2 1 4 4 H 1.48506 * 109.46944 * 269.99989 * 3 2 1 5 5 H 1.48503 * 109.47200 * 29.99934 * 3 2 1 6 6 H 1.48502 * 109.47091 * 150.00105 * 3 2 1 7 7 C 1.38639 * 120.00276 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00125 * 180.02562 * 7 2 1 9 9 O 1.34819 * 120.00007 * 359.97438 * 7 2 1 10 10 C 1.35695 * 116.99929 * 185.05895 * 9 7 2 11 11 C 1.39004 * 119.94405 * 354.45294 * 10 9 7 12 12 C 1.37827 * 120.04996 * 180.02562 * 11 10 9 13 13 C 1.39457 * 119.94773 * 0.02562 * 12 11 10 14 14 C 1.48283 * 120.05590 * 180.02562 * 13 12 11 15 15 C 1.40471 * 119.71831 * 0.02562 * 14 13 12 16 16 C 1.35785 * 120.85907 * 179.97438 * 15 14 13 17 17 C 1.40664 * 119.98868 * 0.04182 * 16 15 14 18 18 C 1.40511 * 121.06217 * 180.02562 * 17 16 15 19 19 C 1.36131 * 119.70916 * 179.97438 * 18 17 16 20 20 C 1.39368 * 121.00487 * 0.02562 * 19 18 17 21 21 C 1.36094 * 120.95677 * 359.97438 * 20 19 18 22 22 C 1.40634 * 119.66849 * 359.97438 * 21 20 19 23 23 C 1.38258 * 119.72221 * 179.97438 * 14 13 12 24 24 C 1.39467 * 119.89189 * 0.26993 * 13 12 11 25 25 C 1.37823 * 119.94128 * 359.42860 * 24 13 12 26 26 H 0.97006 * 120.00465 * 0.02562 * 1 2 3 27 27 H 1.07993 * 119.97614 * 359.97438 * 11 10 9 28 28 H 1.08001 * 120.02414 * 180.02562 * 12 11 10 29 29 H 1.07996 * 119.56810 * 0.02562 * 15 14 13 30 30 H 1.07998 * 120.00035 * 180.02562 * 16 15 14 31 31 H 1.07998 * 120.14463 * 359.96029 * 18 17 16 32 32 H 1.07990 * 119.49715 * 179.97438 * 19 18 17 33 33 H 1.07995 * 119.52094 * 179.97438 * 20 19 18 34 34 H 1.08003 * 120.16633 * 180.27884 * 21 20 19 35 35 H 1.07997 * 120.26691 * 0.02562 * 23 14 13 36 36 H 1.08005 * 120.02692 * 179.73327 * 24 13 12 37 37 H 1.08007 * 119.97058 * 180.27265 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4469 2.6528 0.7000 6 1 3.5471 1.4403 0.7000 7 6 2.0088 -1.2006 -0.0005 8 1 3.0888 -1.2006 -0.0001 9 8 1.3348 -2.3682 -0.0005 10 6 2.0699 -3.5039 0.1055 11 6 3.4582 -3.4356 0.0915 12 6 4.2069 -4.5878 0.1986 13 6 3.5707 -5.8228 0.3205 14 6 4.3739 -7.0638 0.4364 15 6 5.7766 -6.9892 0.4234 16 6 6.5347 -8.1108 0.5286 17 6 5.9164 -9.3683 0.6517 18 6 6.6789 -10.5433 0.7625 19 6 6.0520 -11.7458 0.8808 20 6 4.6610 -11.8320 0.8935 21 6 3.8894 -10.7159 0.7884 22 6 4.5014 -9.4556 0.6656 23 6 3.7359 -8.2844 0.5575 24 6 2.1776 -5.8892 0.3281 25 6 1.4333 -4.7336 0.2270 26 1 -0.4851 0.8401 -0.0004 27 1 3.9504 -2.4792 -0.0041 28 1 5.2855 -4.5343 0.1881 29 1 6.2582 -6.0272 0.3293 30 1 7.6121 -8.0374 0.5174 31 1 7.7577 -10.4927 0.7535 32 1 6.6413 -12.6468 0.9654 33 1 4.1886 -12.7986 0.9881 34 1 2.8126 -10.7970 0.8042 35 1 2.6572 -8.3362 0.5674 36 1 1.6826 -6.8449 0.4181 37 1 0.3544 -4.7841 0.2373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243590609.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:47 Heat of formation + Delta-G solvation = 35.996721 kcal Electronic energy + Delta-G solvation = -20570.330785 eV Core-core repulsion = 17435.637496 eV Total energy + Delta-G solvation = -3134.693290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.105 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.29333 -39.07237 -37.24560 -35.66517 -32.79799 -32.40803 -30.99945 -30.40644 -29.33221 -27.50880 -25.53208 -23.54544 -23.08642 -22.23232 -21.19869 -20.71869 -18.15971 -17.38479 -17.30913 -16.76688 -15.93240 -14.92128 -14.76671 -14.53639 -14.29008 -13.90148 -13.79688 -13.55844 -13.50936 -13.29692 -12.94137 -12.89445 -12.31964 -11.95929 -11.94004 -11.76732 -11.31569 -11.20135 -10.98967 -10.78777 -10.71075 -10.55166 -10.41746 -9.92189 -9.42679 -9.04326 -8.55561 -8.31846 -7.96886 -6.94315 -6.57364 -4.13597 0.52685 0.96723 1.97023 2.15016 2.33505 3.04892 3.07439 3.12499 3.23313 3.87412 4.17021 4.60643 4.60925 4.82618 4.87416 4.96936 5.00031 5.07690 5.14025 5.28965 5.35553 5.40180 5.45844 5.61936 5.63389 5.83053 5.98088 6.05236 6.09516 6.18716 6.28444 6.33382 6.45626 6.53352 6.62137 6.66659 6.82336 6.87768 6.94320 7.07519 7.20665 7.29282 7.33856 7.69362 7.87588 8.87661 9.55644 10.59782 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.043119 B = 0.002814 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.207403 B = 9947.428802 C =10580.461318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.392 4.392 8 H 0.095 0.905 9 O -0.169 6.169 10 C 0.160 3.840 11 C -0.236 4.236 12 C -0.051 4.051 13 C -0.165 4.165 14 C 0.008 3.992 15 C -0.114 4.114 16 C -0.106 4.106 17 C -0.069 4.069 18 C -0.101 4.101 19 C -0.132 4.132 20 C -0.120 4.120 21 C -0.110 4.110 22 C -0.037 4.037 23 C -0.133 4.133 24 C -0.055 4.055 25 C -0.193 4.193 26 H 0.272 0.728 27 H 0.130 0.870 28 H 0.112 0.888 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.116 0.884 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.681 -16.980 1.347 20.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.468 4.468 8 H 0.112 0.888 9 O -0.071 6.071 10 C 0.105 3.895 11 C -0.255 4.255 12 C -0.069 4.069 13 C -0.166 4.166 14 C 0.008 3.992 15 C -0.131 4.131 16 C -0.124 4.124 17 C -0.069 4.069 18 C -0.119 4.119 19 C -0.150 4.150 20 C -0.138 4.138 21 C -0.128 4.128 22 C -0.037 4.037 23 C -0.151 4.151 24 C -0.073 4.073 25 C -0.213 4.213 26 H 0.082 0.918 27 H 0.148 0.852 28 H 0.130 0.870 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.134 0.866 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.220 -16.724 1.327 19.644 hybrid contribution 0.496 0.834 -0.012 0.971 sum 10.716 -15.890 1.314 19.211 Atomic orbital electron populations 1.70036 1.06054 1.28018 1.44912 1.25346 0.95886 0.99025 0.96251 0.85676 0.78966 0.79767 0.78848 1.19729 1.20120 1.19055 1.21403 0.91975 0.80688 1.52740 0.88768 1.83954 1.34669 1.11637 1.76807 1.19500 0.90304 0.87968 0.91716 1.21103 0.93715 0.98952 1.11722 1.20837 0.98482 0.91450 0.96169 1.18240 0.92706 0.91522 1.14126 1.18806 0.92526 0.92604 0.95241 1.20974 0.93266 0.98709 1.00195 1.20879 0.99452 0.91562 1.00495 1.18072 0.92699 0.93800 1.02336 1.20992 0.99305 0.91982 0.99653 1.20751 0.94704 0.97615 1.01958 1.20780 0.93924 0.98400 1.00743 1.21047 0.99749 0.91717 1.00294 1.18019 0.92542 0.93686 0.99476 1.21260 0.99511 0.90835 1.03471 1.20722 0.92583 0.96918 0.97115 1.20155 0.99710 0.90133 1.11255 0.91767 0.85233 0.87018 0.85722 0.85877 0.86026 0.86475 0.86388 0.85799 0.85436 0.86612 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.47 13.67 55.48 0.76 -23.71 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 19.90 29.55 -169.99 -5.02 14.87 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.39 -10.64 9.48 30.88 0.29 -10.35 16 8 H 0.09 2.35 5.19 -52.49 -0.27 2.08 16 9 O -0.17 -4.68 9.75 0.25 0.00 -4.68 16 10 C 0.16 3.78 6.65 -39.01 -0.26 3.52 16 11 C -0.24 -4.98 9.15 -39.45 -0.36 -5.34 16 12 C -0.05 -0.93 9.41 -39.28 -0.37 -1.30 16 13 C -0.17 -2.90 5.88 -104.85 -0.62 -3.52 16 14 C 0.01 0.13 5.87 -104.92 -0.62 -0.49 16 15 C -0.11 -1.56 9.33 -39.62 -0.37 -1.93 16 16 C -0.11 -1.31 9.73 -39.54 -0.38 -1.69 16 17 C -0.07 -0.89 5.74 -106.77 -0.61 -1.50 16 18 C -0.10 -1.09 9.76 -39.48 -0.39 -1.47 16 19 C -0.13 -1.30 9.95 -39.92 -0.40 -1.69 16 20 C -0.12 -1.21 9.95 -39.93 -0.40 -1.61 16 21 C -0.11 -1.26 9.77 -39.45 -0.39 -1.64 16 22 C -0.04 -0.50 5.74 -106.85 -0.61 -1.12 16 23 C -0.13 -1.90 9.17 -38.79 -0.36 -2.26 16 24 C -0.06 -0.98 9.40 -39.28 -0.37 -1.35 16 25 C -0.19 -3.99 9.98 -39.45 -0.39 -4.38 16 26 H 0.27 7.11 8.31 -40.82 -0.34 6.78 16 27 H 0.13 2.71 5.62 -52.49 -0.30 2.41 16 28 H 0.11 1.69 6.15 -52.49 -0.32 1.37 16 29 H 0.12 1.53 6.14 -52.49 -0.32 1.21 16 30 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 31 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 35 H 0.13 1.65 6.15 -52.49 -0.32 1.32 16 36 H 0.12 1.71 6.16 -52.48 -0.32 1.39 16 37 H 0.12 2.37 8.06 -52.48 -0.42 1.94 16 LS Contribution 316.82 15.07 4.77 4.77 Total: -1.00 -30.19 316.82 -9.71 -39.90 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -3.53 Total: 6.00 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: -6.69 Total: -37.15 kcal Atomic # 7 Polarization: -24.47 SS G_CDS: 0.76 Total: -23.71 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: 0.00 Total: -4.68 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.19 -9.71 -39.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590609.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.892 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds