Wall clock time and date at job start Tue Mar 31 2020 08:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86805 * 119.99656 * 2 1 4 4 H 1.48506 * 109.46944 * 269.99989 * 3 2 1 5 5 H 1.48503 * 109.47200 * 29.99934 * 3 2 1 6 6 H 1.48502 * 109.47091 * 150.00105 * 3 2 1 7 7 C 1.38639 * 120.00276 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00125 * 180.02562 * 7 2 1 9 9 O 1.34819 * 120.00007 * 359.97438 * 7 2 1 10 10 C 1.35695 * 116.99929 * 185.05895 * 9 7 2 11 11 C 1.39004 * 119.94405 * 354.45294 * 10 9 7 12 12 C 1.37827 * 120.04996 * 180.02562 * 11 10 9 13 13 C 1.39457 * 119.94773 * 0.02562 * 12 11 10 14 14 C 1.48283 * 120.05590 * 180.02562 * 13 12 11 15 15 C 1.40471 * 119.71831 * 0.02562 * 14 13 12 16 16 C 1.35785 * 120.85907 * 179.97438 * 15 14 13 17 17 C 1.40664 * 119.98868 * 0.04182 * 16 15 14 18 18 C 1.40511 * 121.06217 * 180.02562 * 17 16 15 19 19 C 1.36131 * 119.70916 * 179.97438 * 18 17 16 20 20 C 1.39368 * 121.00487 * 0.02562 * 19 18 17 21 21 C 1.36094 * 120.95677 * 359.97438 * 20 19 18 22 22 C 1.40634 * 119.66849 * 359.97438 * 21 20 19 23 23 C 1.38258 * 119.72221 * 179.97438 * 14 13 12 24 24 C 1.39467 * 119.89189 * 0.26993 * 13 12 11 25 25 C 1.37823 * 119.94128 * 359.42860 * 24 13 12 26 26 H 0.97006 * 120.00465 * 0.02562 * 1 2 3 27 27 H 1.07993 * 119.97614 * 359.97438 * 11 10 9 28 28 H 1.08001 * 120.02414 * 180.02562 * 12 11 10 29 29 H 1.07996 * 119.56810 * 0.02562 * 15 14 13 30 30 H 1.07998 * 120.00035 * 180.02562 * 16 15 14 31 31 H 1.07998 * 120.14463 * 359.96029 * 18 17 16 32 32 H 1.07990 * 119.49715 * 179.97438 * 19 18 17 33 33 H 1.07995 * 119.52094 * 179.97438 * 20 19 18 34 34 H 1.08003 * 120.16633 * 180.27884 * 21 20 19 35 35 H 1.07997 * 120.26691 * 0.02562 * 23 14 13 36 36 H 1.08005 * 120.02692 * 179.73327 * 24 13 12 37 37 H 1.08007 * 119.97058 * 180.27265 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4469 2.6528 0.7000 6 1 3.5471 1.4403 0.7000 7 6 2.0088 -1.2006 -0.0005 8 1 3.0888 -1.2006 -0.0001 9 8 1.3348 -2.3682 -0.0005 10 6 2.0699 -3.5039 0.1055 11 6 3.4582 -3.4356 0.0915 12 6 4.2069 -4.5878 0.1986 13 6 3.5707 -5.8228 0.3205 14 6 4.3739 -7.0638 0.4364 15 6 5.7766 -6.9892 0.4234 16 6 6.5347 -8.1108 0.5286 17 6 5.9164 -9.3683 0.6517 18 6 6.6789 -10.5433 0.7625 19 6 6.0520 -11.7458 0.8808 20 6 4.6610 -11.8320 0.8935 21 6 3.8894 -10.7159 0.7884 22 6 4.5014 -9.4556 0.6656 23 6 3.7359 -8.2844 0.5575 24 6 2.1776 -5.8892 0.3281 25 6 1.4333 -4.7336 0.2270 26 1 -0.4851 0.8401 -0.0004 27 1 3.9504 -2.4792 -0.0041 28 1 5.2855 -4.5343 0.1881 29 1 6.2582 -6.0272 0.3293 30 1 7.6121 -8.0374 0.5174 31 1 7.7577 -10.4927 0.7535 32 1 6.6413 -12.6468 0.9654 33 1 4.1886 -12.7986 0.9881 34 1 2.8126 -10.7970 0.8042 35 1 2.6572 -8.3362 0.5674 36 1 1.6826 -6.8449 0.4181 37 1 0.3544 -4.7841 0.2373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243590609.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:45 Heat of formation + Delta-G solvation = 21.497847 kcal Electronic energy + Delta-G solvation = -20570.959504 eV Core-core repulsion = 17435.637496 eV Total energy + Delta-G solvation = -3135.322008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.105 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.33895 -40.64356 -38.67398 -36.87262 -34.36801 -33.68983 -32.28194 -31.84496 -30.35198 -28.82925 -27.37629 -24.71159 -24.29028 -23.32773 -22.42108 -22.11337 -19.89180 -19.00712 -18.36280 -17.80955 -17.13570 -16.30546 -16.17822 -15.92180 -15.59672 -15.53457 -15.17201 -14.64939 -14.58795 -14.47663 -14.40006 -13.94957 -13.60637 -13.55165 -13.32434 -13.06433 -12.74257 -12.57041 -12.26566 -12.13316 -12.00984 -11.81488 -11.63003 -11.14221 -10.94886 -10.76426 -9.88323 -9.76800 -9.00713 -8.50445 -8.35949 -6.17037 -0.46528 -0.03833 0.55154 0.75086 1.24624 1.35162 1.44618 1.52773 2.15433 2.17115 2.84054 3.11669 3.35669 3.43747 3.70256 3.75691 3.93289 4.05673 4.10307 4.16648 4.27647 4.35344 4.44009 4.48948 4.50910 4.64696 4.70349 4.86893 5.00059 5.06035 5.09438 5.15960 5.24020 5.34132 5.38334 5.46606 5.53475 5.64342 5.65327 5.72677 5.89533 5.97787 5.99009 6.11040 6.18223 6.94158 7.72554 8.72538 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.043119 B = 0.002814 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.207403 B = 9947.428802 C =10580.461318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.022 4.022 3 Si 1.019 2.981 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.252 1.252 7 C -0.415 4.415 8 H 0.105 0.895 9 O -0.225 6.225 10 C 0.120 3.880 11 C -0.240 4.240 12 C -0.055 4.055 13 C -0.138 4.138 14 C -0.025 4.025 15 C -0.127 4.127 16 C -0.101 4.101 17 C -0.081 4.081 18 C -0.111 4.111 19 C -0.127 4.127 20 C -0.118 4.118 21 C -0.124 4.124 22 C -0.063 4.063 23 C -0.127 4.127 24 C -0.056 4.056 25 C -0.201 4.201 26 H 0.274 0.726 27 H 0.126 0.874 28 H 0.146 0.854 29 H 0.136 0.864 30 H 0.153 0.847 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.149 0.851 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.040 -20.558 1.737 24.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.838 3.162 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.175 1.175 7 C -0.491 4.491 8 H 0.122 0.878 9 O -0.131 6.131 10 C 0.069 3.931 11 C -0.260 4.260 12 C -0.073 4.073 13 C -0.139 4.139 14 C -0.025 4.025 15 C -0.145 4.145 16 C -0.119 4.119 17 C -0.081 4.081 18 C -0.129 4.129 19 C -0.144 4.144 20 C -0.136 4.136 21 C -0.142 4.142 22 C -0.063 4.063 23 C -0.145 4.145 24 C -0.074 4.074 25 C -0.221 4.221 26 H 0.083 0.917 27 H 0.143 0.857 28 H 0.163 0.837 29 H 0.153 0.847 30 H 0.170 0.830 31 H 0.165 0.835 32 H 0.166 0.834 33 H 0.163 0.837 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.167 0.833 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.619 -20.373 1.719 24.566 hybrid contribution -0.300 1.203 -0.079 1.243 sum 13.320 -19.169 1.640 23.400 Atomic orbital electron populations 1.70181 1.08071 1.28969 1.48347 1.26619 0.96857 1.02810 0.95660 0.84576 0.77848 0.74420 0.79314 1.18733 1.19590 1.17544 1.21871 0.92671 0.81306 1.53275 0.87816 1.83929 1.36056 1.12642 1.80504 1.20025 0.91602 0.87939 0.93529 1.21216 0.93013 1.00032 1.11689 1.21168 1.00107 0.90545 0.95455 1.18658 0.92894 0.92555 1.09778 1.18762 0.93371 0.91736 0.98663 1.21108 0.92580 0.99926 1.00847 1.21208 1.00892 0.90861 0.98953 1.18450 0.92828 0.94986 1.01834 1.21329 1.00670 0.91465 0.99428 1.21214 0.94966 0.98557 0.99689 1.21200 0.94294 0.99184 0.98936 1.21298 1.00866 0.91439 1.00602 1.18274 0.93213 0.94173 1.00598 1.21468 1.00154 0.90954 1.01885 1.21078 0.92954 0.97220 0.96109 1.20390 1.00152 0.90281 1.11240 0.91707 0.85664 0.83661 0.84656 0.82955 0.83484 0.83449 0.83657 0.84432 0.84650 0.83313 0.86268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.00 13.67 21.61 0.30 -55.71 16 2 C -0.02 -1.21 5.49 84.83 0.47 -0.75 16 3 Si 1.02 42.35 29.55 68.60 2.03 44.37 16 4 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 7 C -0.42 -23.99 9.48 67.92 0.64 -23.35 16 8 H 0.10 5.46 5.19 -2.91 -0.02 5.45 16 9 O -0.23 -13.51 9.75 -22.02 -0.21 -13.72 16 10 C 0.12 6.00 6.65 22.64 0.15 6.15 16 11 C -0.24 -10.48 9.15 22.36 0.20 -10.27 16 12 C -0.06 -1.95 9.41 22.47 0.21 -1.74 16 13 C -0.14 -4.70 5.88 -20.01 -0.12 -4.81 16 14 C -0.03 -0.73 5.87 -20.06 -0.12 -0.85 16 15 C -0.13 -3.15 9.33 22.25 0.21 -2.94 16 16 C -0.10 -2.15 9.73 22.29 0.22 -1.94 16 17 C -0.08 -1.81 5.74 -21.26 -0.12 -1.93 16 18 C -0.11 -1.89 9.76 22.33 0.22 -1.67 16 19 C -0.13 -1.86 9.95 22.05 0.22 -1.64 16 20 C -0.12 -1.86 9.95 22.04 0.22 -1.64 16 21 C -0.12 -2.43 9.77 22.36 0.22 -2.21 16 22 C -0.06 -1.52 5.74 -21.31 -0.12 -1.64 16 23 C -0.13 -3.35 9.17 22.79 0.21 -3.14 16 24 C -0.06 -1.96 9.40 22.47 0.21 -1.75 16 25 C -0.20 -8.66 9.98 22.36 0.22 -8.43 16 26 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 27 H 0.13 5.46 5.62 -2.91 -0.02 5.44 16 28 H 0.15 4.11 6.15 -2.91 -0.02 4.09 16 29 H 0.14 2.94 6.14 -2.91 -0.02 2.92 16 30 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 31 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 32 H 0.15 1.29 8.06 -2.92 -0.02 1.26 16 33 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 34 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 35 H 0.14 3.19 6.15 -2.91 -0.02 3.17 16 36 H 0.15 4.15 6.16 -2.91 -0.02 4.13 16 37 H 0.12 5.00 8.06 -2.91 -0.02 4.97 16 Total: -1.00 -71.32 316.82 6.35 -64.97 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 1.11 Total: 24.65 kcal Atomic # 6 Polarization: -67.70 SS G_CDS: 3.14 Total: -64.56 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.30 Total: -55.71 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.21 Total: -13.72 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Total: -71.32 6.35 -64.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590609.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.464 kcal (2) G-P(sol) polarization free energy of solvation -71.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds