Wall clock time and date at job start Tue Mar 31 2020 07:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 F 1.39898 * 109.46994 * 2 1 4 4 F 1.39904 * 109.46366 * 240.00654 * 2 1 3 5 5 C 1.50699 * 109.47366 * 120.00724 * 2 1 3 6 6 C 1.38332 * 119.86933 * 269.99982 * 5 2 1 7 7 C 1.38000 * 120.12785 * 180.02562 * 6 5 2 8 8 C 1.39392 * 119.87025 * 359.97438 * 7 6 5 9 9 C 1.48301 * 120.13025 * 180.02562 * 8 7 6 10 10 C 1.40037 * 119.97906 * 4.98247 * 9 8 7 11 11 N 1.32181 * 120.29388 * 180.02562 * 10 9 8 12 12 C 1.31892 * 120.28010 * 359.73187 * 11 10 9 13 13 C 1.40818 * 119.96522 * 0.51531 * 12 11 10 14 14 C 1.41330 * 120.14505 * 179.75536 * 13 12 11 15 15 H 1.08001 * 120.00104 * 204.95677 * 14 13 12 16 16 C 1.40047 * 119.99815 * 24.96203 * 14 13 12 17 17 N 1.30727 * 120.00060 * 17.50357 * 16 14 13 18 18 Si 1.86807 * 119.99873 * 197.50583 * 16 14 13 19 19 H 1.48503 * 109.47118 * 265.18495 * 18 16 14 20 20 H 1.48496 * 109.47104 * 25.18418 * 18 16 14 21 21 H 1.48498 * 109.47022 * 145.18449 * 18 16 14 22 22 N 1.32519 * 119.98970 * 184.99489 * 9 8 7 23 23 C 1.39398 * 119.74695 * 0.27615 * 8 7 6 24 24 C 1.38000 * 119.87511 * 359.46789 * 23 8 7 25 25 H 1.09004 * 109.46461 * 299.99669 * 1 2 3 26 26 H 1.09000 * 109.47414 * 59.99241 * 1 2 3 27 27 H 1.08997 * 109.47126 * 179.97438 * 1 2 3 28 28 H 1.08003 * 119.93955 * 359.97438 * 6 5 2 29 29 H 1.07995 * 120.06867 * 180.02562 * 7 6 5 30 30 H 1.07996 * 119.85692 * 359.97438 * 10 9 8 31 31 H 1.08003 * 120.01607 * 180.28094 * 12 11 10 32 32 H 0.97008 * 119.99636 * 179.97438 * 17 16 14 33 33 H 1.08008 * 120.06165 * 179.73018 * 23 8 7 34 34 H 1.08000 * 119.94059 * 180.25258 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0325 -0.7105 1.2303 6 6 2.2621 0.0034 2.3927 7 6 2.7227 -0.6418 3.5223 8 6 2.9560 -2.0157 3.4906 9 6 3.4503 -2.7150 4.7014 10 6 3.5843 -2.0160 5.9074 11 7 4.0248 -2.6330 6.9902 12 6 4.3371 -3.9136 6.9453 13 6 4.2117 -4.6262 5.7373 14 6 4.5501 -5.9974 5.6836 15 1 4.8452 -6.4445 4.7458 16 6 4.5026 -6.7763 6.8465 17 7 3.8357 -6.3547 7.8888 18 14 5.3922 -8.4178 6.9081 19 1 4.4452 -9.5075 6.5601 20 1 6.5152 -8.4090 5.9365 21 1 5.9234 -8.6418 8.2766 22 7 3.7654 -4.0008 4.6415 23 6 2.7277 -2.7290 2.3150 24 6 2.2621 -2.0742 1.1930 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 2.0815 1.0680 2.4160 29 1 2.9013 -0.0835 4.4294 30 1 3.3274 -0.9681 5.9529 31 1 4.6923 -4.4146 7.8338 32 1 3.8025 -6.8945 8.6942 33 1 2.9109 -3.7930 2.2835 34 1 2.0810 -2.6265 0.2828 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243643686.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:52 Heat of formation + Delta-G solvation = -48.680155 kcal Electronic energy + Delta-G solvation = -21551.926323 eV Core-core repulsion = 17891.624390 eV Total energy + Delta-G solvation = -3660.301933 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.05410 -47.06568 -39.61798 -38.49224 -34.38516 -33.48085 -32.37498 -30.93372 -30.61227 -28.58650 -26.30442 -24.49114 -23.02404 -22.28701 -21.47310 -20.60231 -17.99291 -17.61482 -17.42099 -16.39018 -16.12500 -15.66366 -15.46874 -14.99854 -14.32660 -14.21126 -13.83745 -13.57032 -13.53988 -13.43935 -13.25752 -13.04113 -12.72635 -12.55170 -12.37881 -12.03649 -11.77371 -11.48744 -11.34950 -11.05726 -10.83730 -10.80255 -10.48577 -9.97578 -9.95536 -9.58664 -8.82210 -8.78191 -7.63249 -7.46214 -7.14745 -4.81906 0.99436 1.57542 2.41204 2.73648 2.93887 2.97838 3.03865 3.61952 3.71260 3.90539 4.04943 4.36563 4.39342 4.61223 4.91864 5.05149 5.13078 5.26934 5.34215 5.53087 5.56777 5.63240 5.72489 5.85810 5.97110 6.05435 6.20495 6.29423 6.51837 6.52305 6.74951 6.83496 6.97948 7.08198 7.15587 7.48749 8.03429 8.31350 8.37714 9.01441 9.48932 9.84154 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.030938 B = 0.003363 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.815977 B = 8322.960776 C = 8972.852555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.339 3.661 3 F -0.198 7.198 4 F -0.198 7.198 5 C -0.169 4.169 6 C -0.092 4.092 7 C -0.110 4.110 8 C 0.005 3.995 9 C 0.121 3.879 10 C -0.083 4.083 11 N -0.444 5.444 12 C 0.018 3.982 13 C 0.227 3.773 14 C -0.422 4.422 15 H 0.092 0.908 16 C 0.075 3.925 17 N -0.782 5.782 18 Si 0.925 3.075 19 H -0.267 1.267 20 H -0.256 1.256 21 H -0.271 1.271 22 N -0.518 5.518 23 C -0.088 4.088 24 C -0.093 4.093 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.128 0.872 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.161 0.839 32 H 0.290 0.710 33 H 0.142 0.858 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.894 7.225 -9.535 12.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.303 3.697 3 F -0.179 7.179 4 F -0.179 7.179 5 C -0.170 4.170 6 C -0.110 4.110 7 C -0.129 4.129 8 C 0.004 3.996 9 C -0.021 4.021 10 C -0.240 4.240 11 N -0.155 5.155 12 C -0.153 4.153 13 C 0.098 3.902 14 C -0.456 4.456 15 H 0.110 0.890 16 C -0.146 4.146 17 N -0.407 5.407 18 Si 0.748 3.252 19 H -0.192 1.192 20 H -0.180 1.180 21 H -0.196 1.196 22 N -0.236 5.236 23 C -0.107 4.107 24 C -0.111 4.111 25 H 0.109 0.891 26 H 0.099 0.901 27 H 0.109 0.891 28 H 0.146 0.854 29 H 0.151 0.849 30 H 0.150 0.850 31 H 0.178 0.822 32 H 0.101 0.899 33 H 0.160 0.840 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.953 7.225 -9.334 12.801 hybrid contribution 0.335 -0.643 0.079 0.730 sum -4.618 6.581 -9.255 12.259 Atomic orbital electron populations 1.22751 0.90914 1.05686 1.05097 1.19459 0.93449 0.74856 0.81951 1.93001 1.90703 1.37474 1.96760 1.93007 1.90695 1.81006 1.53168 1.20144 1.06906 0.95290 0.94652 1.20718 0.98771 0.99672 0.91819 1.21227 0.99511 0.93743 0.98414 1.18894 0.95581 0.92522 0.92643 1.20338 0.97609 0.92021 0.92178 1.22665 1.11576 0.99857 0.89867 1.67931 1.07800 1.10886 1.28898 1.23904 1.02048 0.89018 1.00316 1.19321 0.88502 0.94558 0.87789 1.19374 1.37917 0.92244 0.96019 0.88970 1.26053 0.93020 1.01195 0.94375 1.69718 1.28513 1.38505 1.03994 0.86008 0.80340 0.79813 0.79020 1.19156 1.17983 1.19614 1.68878 1.16117 1.07171 1.31481 1.21391 0.96829 1.01310 0.91155 1.20846 0.98545 0.92843 0.98878 0.89119 0.90081 0.89084 0.85397 0.84918 0.85022 0.82199 0.89863 0.84037 0.85436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.63 9.37 37.16 0.35 -1.28 16 2 C 0.34 4.06 2.32 -27.88 -0.06 4.00 16 3 F -0.20 -2.54 16.20 2.25 0.04 -2.51 16 4 F -0.20 -2.60 16.20 2.25 0.04 -2.56 16 5 C -0.17 -2.31 5.00 -104.55 -0.52 -2.83 16 6 C -0.09 -1.25 9.38 -39.63 -0.37 -1.62 16 7 C -0.11 -1.71 9.42 -39.24 -0.37 -2.08 16 8 C 0.01 0.10 5.87 -104.90 -0.62 -0.52 16 9 C 0.12 2.77 6.73 -82.76 -0.56 2.21 16 10 C -0.08 -1.90 10.61 -16.73 -0.18 -2.07 16 11 N -0.44 -11.13 10.47 -12.05 -0.13 -11.25 16 12 C 0.02 0.48 9.88 -16.55 -0.16 0.31 16 13 C 0.23 6.01 6.41 -84.84 -0.54 5.47 16 14 C -0.42 -10.69 9.29 -37.73 -0.35 -11.04 16 15 H 0.09 2.27 7.91 -52.49 -0.41 1.86 16 16 C 0.08 1.74 5.14 -17.34 -0.09 1.65 16 17 N -0.78 -18.72 10.96 55.55 0.61 -18.12 16 18 Si 0.93 17.18 29.59 -169.99 -5.03 12.14 16 19 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 20 H -0.26 -4.75 7.11 56.52 0.40 -4.34 16 21 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 22 N -0.52 -13.14 9.57 -7.50 -0.07 -13.21 16 23 C -0.09 -1.53 9.58 -39.24 -0.38 -1.91 16 24 C -0.09 -1.35 9.38 -39.63 -0.37 -1.72 16 25 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.13 1.44 7.59 -52.48 -0.40 1.05 16 29 H 0.13 1.86 6.22 -52.49 -0.33 1.53 16 30 H 0.13 2.53 6.22 -52.49 -0.33 2.20 16 31 H 0.16 4.15 6.17 -52.48 -0.32 3.83 16 32 H 0.29 6.20 8.29 -40.82 -0.34 5.86 16 33 H 0.14 2.58 7.56 -52.48 -0.40 2.19 16 34 H 0.13 1.60 7.59 -52.49 -0.40 1.20 16 LS Contribution 304.66 15.07 4.59 4.59 Total: -1.00 -28.02 304.66 -7.17 -35.18 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -2.99 Total: 7.16 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -4.23 Total: -11.44 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.41 Total: -42.58 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.07 Total: -5.07 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.14 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.02 -7.17 -35.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243643686.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.495 kcal (2) G-P(sol) polarization free energy of solvation -28.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds