Wall clock time and date at job start Tue Mar 31 2020 07:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 F 1.39898 * 109.46994 * 2 1 4 4 F 1.39904 * 109.46366 * 240.00654 * 2 1 3 5 5 C 1.50699 * 109.47366 * 120.00724 * 2 1 3 6 6 C 1.38332 * 119.86933 * 269.99982 * 5 2 1 7 7 C 1.38000 * 120.12785 * 180.02562 * 6 5 2 8 8 C 1.39392 * 119.87025 * 359.97438 * 7 6 5 9 9 C 1.48301 * 120.13025 * 180.02562 * 8 7 6 10 10 C 1.40037 * 119.97906 * 4.98247 * 9 8 7 11 11 N 1.32181 * 120.29388 * 180.02562 * 10 9 8 12 12 C 1.31892 * 120.28010 * 359.73187 * 11 10 9 13 13 C 1.40818 * 119.96522 * 0.51531 * 12 11 10 14 14 C 1.41330 * 120.14505 * 179.75536 * 13 12 11 15 15 H 1.08001 * 120.00104 * 204.95677 * 14 13 12 16 16 C 1.40047 * 119.99815 * 24.96203 * 14 13 12 17 17 N 1.30727 * 120.00060 * 17.50357 * 16 14 13 18 18 Si 1.86807 * 119.99873 * 197.50583 * 16 14 13 19 19 H 1.48503 * 109.47118 * 265.18495 * 18 16 14 20 20 H 1.48496 * 109.47104 * 25.18418 * 18 16 14 21 21 H 1.48498 * 109.47022 * 145.18449 * 18 16 14 22 22 N 1.32519 * 119.98970 * 184.99489 * 9 8 7 23 23 C 1.39398 * 119.74695 * 0.27615 * 8 7 6 24 24 C 1.38000 * 119.87511 * 359.46789 * 23 8 7 25 25 H 1.09004 * 109.46461 * 299.99669 * 1 2 3 26 26 H 1.09000 * 109.47414 * 59.99241 * 1 2 3 27 27 H 1.08997 * 109.47126 * 179.97438 * 1 2 3 28 28 H 1.08003 * 119.93955 * 359.97438 * 6 5 2 29 29 H 1.07995 * 120.06867 * 180.02562 * 7 6 5 30 30 H 1.07996 * 119.85692 * 359.97438 * 10 9 8 31 31 H 1.08003 * 120.01607 * 180.28094 * 12 11 10 32 32 H 0.97008 * 119.99636 * 179.97438 * 17 16 14 33 33 H 1.08008 * 120.06165 * 179.73018 * 23 8 7 34 34 H 1.08000 * 119.94059 * 180.25258 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0325 -0.7105 1.2303 6 6 2.2621 0.0034 2.3927 7 6 2.7227 -0.6418 3.5223 8 6 2.9560 -2.0157 3.4906 9 6 3.4503 -2.7150 4.7014 10 6 3.5843 -2.0160 5.9074 11 7 4.0248 -2.6330 6.9902 12 6 4.3371 -3.9136 6.9453 13 6 4.2117 -4.6262 5.7373 14 6 4.5501 -5.9974 5.6836 15 1 4.8452 -6.4445 4.7458 16 6 4.5026 -6.7763 6.8465 17 7 3.8357 -6.3547 7.8888 18 14 5.3922 -8.4178 6.9081 19 1 4.4452 -9.5075 6.5601 20 1 6.5152 -8.4090 5.9365 21 1 5.9234 -8.6418 8.2766 22 7 3.7654 -4.0008 4.6415 23 6 2.7277 -2.7290 2.3150 24 6 2.2621 -2.0742 1.1930 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 2.0815 1.0680 2.4160 29 1 2.9013 -0.0835 4.4294 30 1 3.3274 -0.9681 5.9529 31 1 4.6923 -4.4146 7.8338 32 1 3.8025 -6.8945 8.6942 33 1 2.9109 -3.7930 2.2835 34 1 2.0810 -2.6265 0.2828 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243643686.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:52 Heat of formation + Delta-G solvation = -63.769597 kcal Electronic energy + Delta-G solvation = -21552.580650 eV Core-core repulsion = 17891.624390 eV Total energy + Delta-G solvation = -3660.956260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.02342 -48.04246 -41.26627 -39.92821 -36.15646 -34.99805 -33.94663 -32.20042 -31.94222 -29.95703 -28.09714 -25.82864 -24.57475 -23.66069 -23.00771 -21.90675 -19.64133 -18.82270 -18.47134 -17.86810 -17.30293 -17.28084 -17.11369 -16.60136 -15.59706 -15.48842 -15.22073 -15.01545 -14.87526 -14.58950 -14.30570 -14.16532 -13.90294 -13.48917 -13.46062 -13.38550 -13.19230 -13.07253 -12.95362 -12.72941 -12.13729 -12.03933 -11.91910 -11.83968 -11.72743 -11.24847 -10.40757 -9.99921 -9.44486 -9.19883 -8.91847 -6.73306 -0.40132 0.36530 0.66599 1.00039 1.39339 1.48790 1.57480 2.15283 2.47355 2.64704 2.75710 3.10629 3.40160 3.44069 3.64958 3.73694 3.88393 3.94962 4.04406 4.22651 4.40381 4.45374 4.56758 4.61321 4.71609 4.78249 4.92366 4.99002 5.03576 5.04799 5.16305 5.31444 5.36274 5.60830 5.64517 5.83345 6.11116 6.45624 6.49604 7.12571 7.60450 8.10340 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.030938 B = 0.003363 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.815977 B = 8322.960776 C = 8972.852555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.336 3.664 3 F -0.201 7.201 4 F -0.205 7.205 5 C -0.158 4.158 6 C -0.084 4.084 7 C -0.101 4.101 8 C -0.031 4.031 9 C 0.124 3.876 10 C -0.095 4.095 11 N -0.452 5.452 12 C -0.016 4.016 13 C 0.201 3.799 14 C -0.452 4.452 15 H 0.088 0.912 16 C 0.040 3.960 17 N -0.808 5.808 18 Si 1.002 2.998 19 H -0.258 1.258 20 H -0.256 1.256 21 H -0.258 1.258 22 N -0.541 5.541 23 C -0.098 4.098 24 C -0.090 4.090 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.160 0.840 29 H 0.149 0.851 30 H 0.169 0.831 31 H 0.152 0.848 32 H 0.302 0.698 33 H 0.121 0.879 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.758 8.295 -10.840 14.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.300 3.700 3 F -0.182 7.182 4 F -0.186 7.186 5 C -0.159 4.159 6 C -0.102 4.102 7 C -0.120 4.120 8 C -0.032 4.032 9 C -0.020 4.020 10 C -0.252 4.252 11 N -0.164 5.164 12 C -0.185 4.185 13 C 0.073 3.927 14 C -0.485 4.485 15 H 0.106 0.894 16 C -0.179 4.179 17 N -0.433 5.433 18 Si 0.821 3.179 19 H -0.183 1.183 20 H -0.180 1.180 21 H -0.181 1.181 22 N -0.261 5.261 23 C -0.117 4.117 24 C -0.108 4.108 25 H 0.122 0.878 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.178 0.822 29 H 0.167 0.833 30 H 0.186 0.814 31 H 0.169 0.831 32 H 0.113 0.887 33 H 0.139 0.861 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.820 8.291 -10.619 14.676 hybrid contribution 0.509 -0.807 0.329 1.009 sum -5.311 7.484 -10.290 13.788 Atomic orbital electron populations 1.22797 0.87947 1.06693 1.06675 1.19698 0.95298 0.74274 0.80684 1.93000 1.90969 1.37582 1.96695 1.93001 1.91001 1.81177 1.53435 1.20473 1.04845 0.94957 0.95652 1.21035 0.97248 1.01082 0.90802 1.21391 0.98527 0.92262 0.99835 1.18865 0.98727 0.93978 0.91649 1.20989 0.95675 0.91344 0.93982 1.23239 1.11253 1.01406 0.89321 1.67876 1.07831 1.10590 1.30103 1.23699 1.04955 0.89694 1.00195 1.19649 0.89208 0.95426 0.88378 1.19654 1.39285 0.92479 0.97042 0.89409 1.26986 0.92990 1.04747 0.93169 1.69744 1.28702 1.40165 1.04690 0.84887 0.78856 0.74668 0.79509 1.18290 1.17994 1.18136 1.68929 1.17021 1.08736 1.31381 1.21294 0.97848 1.00605 0.91985 1.20965 0.97780 0.93535 0.98476 0.87846 0.88333 0.88401 0.82247 0.83328 0.81424 0.83122 0.88677 0.86054 0.83542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 9.37 71.98 0.67 -1.81 16 2 C 0.34 6.91 2.32 29.85 0.07 6.98 16 3 F -0.20 -4.44 16.20 44.97 0.73 -3.71 16 4 F -0.21 -4.80 16.20 44.97 0.73 -4.07 16 5 C -0.16 -3.85 5.00 -19.82 -0.10 -3.95 16 6 C -0.08 -2.00 9.38 22.24 0.21 -1.79 16 7 C -0.10 -2.94 9.42 22.49 0.21 -2.72 16 8 C -0.03 -1.14 5.87 -20.04 -0.12 -1.26 16 9 C 0.12 5.78 6.73 42.16 0.28 6.07 16 10 C -0.10 -4.37 10.61 85.08 0.90 -3.46 16 11 N -0.45 -23.35 10.47 -192.05 -2.01 -25.36 16 12 C -0.02 -0.89 9.88 85.32 0.84 -0.05 16 13 C 0.20 11.20 6.41 40.23 0.26 11.46 16 14 C -0.45 -23.94 9.29 23.47 0.22 -23.73 16 15 H 0.09 4.55 7.91 -2.91 -0.02 4.52 16 16 C 0.04 1.91 5.14 85.30 0.44 2.35 16 17 N -0.81 -39.71 10.96 21.84 0.24 -39.47 16 18 Si 1.00 35.27 29.59 68.60 2.03 37.30 16 19 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 20 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 21 H -0.26 -8.43 7.11 99.48 0.71 -7.72 16 22 N -0.54 -28.75 9.57 -177.65 -1.70 -30.45 16 23 C -0.10 -3.42 9.58 22.49 0.22 -3.21 16 24 C -0.09 -2.46 9.38 22.24 0.21 -2.25 16 25 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.16 2.84 7.59 -2.91 -0.02 2.82 16 29 H 0.15 3.75 6.22 -2.91 -0.02 3.73 16 30 H 0.17 6.22 6.22 -2.91 -0.02 6.21 16 31 H 0.15 8.30 6.17 -2.91 -0.02 8.28 16 32 H 0.30 13.04 8.29 -92.70 -0.77 12.27 16 33 H 0.12 4.65 7.56 -2.91 -0.02 4.63 16 34 H 0.15 3.40 7.59 -2.91 -0.02 3.38 16 Total: -1.00 -63.41 304.66 5.48 -57.93 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 1.15 Total: 25.21 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 4.31 Total: -17.38 kcal Atomic # 7 Polarization: -91.81 SS G_CDS: -3.47 Total: -95.28 kcal Atomic # 9 Polarization: -9.24 SS G_CDS: 1.46 Total: -7.78 kcal Atomic # 14 Polarization: 35.27 SS G_CDS: 2.03 Total: 37.30 kcal Total: -63.41 5.48 -57.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243643686.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.837 kcal (2) G-P(sol) polarization free energy of solvation -63.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds