Wall clock time and date at job start Tue Mar 31 2020 08:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.39685 * 119.99707 * 2 1 4 4 C 1.38963 * 120.00409 * 359.97438 * 3 2 1 5 5 C 1.38387 * 120.14710 * 180.02562 * 4 3 2 6 6 F 1.35102 * 119.92456 * 179.97438 * 5 4 3 7 7 C 1.38314 * 120.14848 * 359.73731 * 5 4 3 8 8 C 1.39335 * 120.00064 * 0.51124 * 7 5 4 9 9 C 1.48382 * 120.07177 * 179.76728 * 8 7 5 10 10 C 1.39015 * 120.42086 * 309.72236 * 9 8 7 11 11 C 1.40953 * 118.12814 * 180.02562 * 10 9 8 12 12 C 1.41380 * 120.57307 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99688 * 155.74584 * 12 11 10 14 14 C 1.39898 * 119.99932 * 335.74442 * 12 11 10 15 15 N 1.30869 * 119.99779 * 343.51222 * 14 12 11 16 16 Si 1.86791 * 120.00137 * 163.50975 * 14 12 11 17 17 H 1.48496 * 109.47333 * 94.73371 * 16 14 12 18 18 H 1.48498 * 109.47516 * 214.73966 * 16 14 12 19 19 H 1.48505 * 109.47158 * 334.73955 * 16 14 12 20 20 C 1.40805 * 118.85587 * 359.97438 * 11 10 9 21 21 N 1.31505 * 120.69461 * 359.97438 * 20 11 10 22 22 C 1.32166 * 122.07890 * 0.02562 * 21 20 11 23 23 F 1.35094 * 119.45965 * 179.97438 * 22 21 20 24 24 C 1.38704 * 119.99695 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47212 * 59.99742 * 1 2 3 26 26 H 1.09001 * 109.46702 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46882 * 299.99706 * 1 2 3 28 28 H 0.96998 * 119.99882 * 179.97438 * 2 1 3 29 29 H 1.08000 * 119.92414 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.99934 * 180.28259 * 7 5 4 31 31 H 1.07991 * 120.93492 * 0.04664 * 10 9 8 32 32 H 0.97000 * 119.99625 * 180.02562 * 15 14 12 33 33 H 1.07997 * 119.65258 * 179.72134 * 20 11 10 34 34 H 1.07992 * 120.07275 * 359.95800 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1634 1.2097 0.0000 4 6 1.4686 2.4132 -0.0005 5 6 2.1575 3.6134 -0.0011 6 9 1.4775 4.7808 -0.0021 7 6 3.5406 3.6205 0.0044 8 6 4.2435 2.4175 -0.0003 9 6 5.7273 2.4233 0.0004 10 6 6.4286 3.1960 -0.9182 11 6 7.8371 3.1649 -0.8747 12 6 8.6018 3.9301 -1.7849 13 1 9.6100 4.2224 -1.5310 14 6 8.0524 4.3087 -3.0146 15 7 6.9824 3.7058 -3.4665 16 14 8.8461 5.6746 -4.0113 17 1 9.7786 5.0847 -5.0050 18 1 7.7934 6.4475 -4.7182 19 1 9.5974 6.5778 -3.1029 20 6 8.4695 2.3585 0.0909 21 7 7.7607 1.6461 0.9391 22 6 6.4391 1.6512 0.9272 23 9 5.7637 0.8985 1.8229 24 6 3.5505 1.2097 0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9500 -0.8400 0.0004 29 1 0.3886 2.4118 -0.0014 30 1 4.0758 4.5586 0.0086 31 1 5.9089 3.8032 -1.6444 32 1 6.6017 3.9681 -4.3193 33 1 9.5481 2.3215 0.1328 34 1 4.0916 0.2752 0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244828333.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:00 Heat of formation + Delta-G solvation = -41.315770 kcal Electronic energy + Delta-G solvation = -22038.991035 eV Core-core repulsion = 18379.008446 eV Total energy + Delta-G solvation = -3659.982589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.57040 -47.59386 -39.22053 -38.14458 -35.40154 -34.21292 -31.97333 -30.41925 -29.73410 -28.34489 -25.91217 -25.51089 -22.94905 -22.41080 -21.49383 -20.35401 -17.95876 -17.15988 -16.67579 -16.38728 -15.97873 -15.70179 -15.28259 -15.20360 -14.97644 -14.60234 -14.45371 -14.19404 -13.89756 -13.25759 -12.72077 -12.51801 -12.35227 -12.22230 -11.99855 -11.96052 -11.80535 -11.52588 -11.36749 -11.18062 -11.04388 -10.72124 -10.21572 -9.87545 -9.51900 -8.84328 -8.47352 -8.07728 -7.58193 -7.30544 -7.04357 -4.65821 1.41868 1.74111 2.38579 2.66375 2.94831 2.96731 3.02651 3.45470 3.73049 4.04154 4.34510 4.63973 4.98548 5.05157 5.12954 5.31186 5.35892 5.41640 5.46019 5.58018 5.75903 5.81886 6.08206 6.20088 6.40973 6.46202 6.51423 6.64552 6.85792 6.88338 6.96030 7.10280 7.40005 7.46770 7.59621 7.71069 7.74080 8.17464 8.43636 8.45343 9.17952 9.87163 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.015850 B = 0.005127 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.175328 B = 5460.477287 C = 6475.245218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.753 5.753 3 C 0.236 3.764 4 C -0.243 4.243 5 C 0.139 3.861 6 F -0.145 7.145 7 C -0.193 4.193 8 C 0.061 3.939 9 C -0.106 4.106 10 C -0.092 4.092 11 C 0.054 3.946 12 C -0.439 4.439 13 H 0.089 0.911 14 C 0.072 3.928 15 N -0.783 5.783 16 Si 0.915 3.085 17 H -0.267 1.267 18 H -0.273 1.273 19 H -0.257 1.257 20 C 0.012 3.988 21 N -0.489 5.489 22 C 0.166 3.834 23 F -0.144 7.144 24 C -0.183 4.183 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.403 0.597 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.141 0.859 32 H 0.288 0.712 33 H 0.139 0.861 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.660 -2.227 1.054 9.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.383 5.383 3 C 0.133 3.867 4 C -0.266 4.266 5 C 0.119 3.881 6 F -0.123 7.123 7 C -0.214 4.214 8 C 0.059 3.941 9 C -0.110 4.110 10 C -0.117 4.117 11 C 0.049 3.951 12 C -0.468 4.468 13 H 0.107 0.893 14 C -0.148 4.148 15 N -0.407 5.407 16 Si 0.739 3.261 17 H -0.192 1.192 18 H -0.198 1.198 19 H -0.181 1.181 20 C -0.150 4.150 21 N -0.201 5.201 22 C 0.012 3.988 23 F -0.124 7.124 24 C -0.205 4.205 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.237 0.763 29 H 0.145 0.855 30 H 0.150 0.850 31 H 0.159 0.841 32 H 0.099 0.901 33 H 0.157 0.843 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.699 -2.711 1.490 10.180 hybrid contribution -0.240 0.748 -1.043 1.306 sum -9.939 -1.963 0.448 10.140 Atomic orbital electron populations 1.21500 0.80459 1.02071 1.01008 1.44354 1.05469 1.05252 1.83235 1.17289 0.90572 0.85681 0.93141 1.20325 0.99802 0.90186 1.16300 1.17183 0.89592 0.80546 1.00785 1.91455 1.80255 1.46670 1.93941 1.20956 0.91614 0.99241 1.09601 1.18231 0.92046 0.91469 0.92353 1.19097 0.90844 1.01963 0.99074 1.21766 0.93933 0.98564 0.97467 1.18491 0.92361 0.91408 0.92810 1.19579 1.00961 1.27300 0.98934 0.89310 1.26029 0.94496 0.96146 0.98086 1.69771 1.18261 1.33969 1.18682 0.86161 0.79739 0.80618 0.79607 1.19245 1.19756 1.18073 1.22314 0.97902 0.98013 0.96745 1.66290 1.06134 1.22025 1.25633 1.17475 0.86804 1.00354 0.94135 1.91403 1.78517 1.75359 1.67103 1.20681 0.91364 0.98496 1.09980 0.93091 0.91031 0.93102 0.76310 0.85482 0.84974 0.84118 0.90117 0.84343 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.84 9.94 59.85 0.59 1.43 16 2 N -0.75 -9.00 5.89 -65.43 -0.39 -9.39 16 3 C 0.24 3.67 6.65 -83.84 -0.56 3.11 16 4 C -0.24 -3.76 9.28 -39.26 -0.36 -4.13 16 5 C 0.14 2.39 7.29 -39.50 -0.29 2.10 16 6 F -0.14 -2.42 17.26 2.25 0.04 -2.38 16 7 C -0.19 -3.67 9.51 -39.15 -0.37 -4.04 16 8 C 0.06 1.23 5.32 -104.94 -0.56 0.68 16 9 C -0.11 -2.44 5.48 -104.75 -0.57 -3.02 16 10 C -0.09 -2.23 8.28 -38.27 -0.32 -2.55 16 11 C 0.05 1.33 5.59 -106.70 -0.60 0.73 16 12 C -0.44 -10.43 9.08 -37.77 -0.34 -10.78 16 13 H 0.09 1.98 7.90 -52.49 -0.41 1.56 16 14 C 0.07 1.64 5.19 -17.34 -0.09 1.55 16 15 N -0.78 -18.49 10.90 55.55 0.61 -17.89 16 16 Si 0.92 16.96 29.59 -169.99 -5.03 11.93 16 17 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 18 H -0.27 -5.01 7.11 56.52 0.40 -4.60 16 19 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 20 C 0.01 0.28 10.96 -16.72 -0.18 0.09 16 21 N -0.49 -12.07 10.33 -12.59 -0.13 -12.20 16 22 C 0.17 4.00 8.30 -16.72 -0.14 3.86 16 23 F -0.14 -3.30 15.91 2.25 0.04 -3.26 16 24 C -0.18 -3.31 8.71 -39.03 -0.34 -3.65 16 25 H 0.05 0.45 7.94 -51.93 -0.41 0.04 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.44 7.95 -51.93 -0.41 0.03 16 28 H 0.40 4.22 8.84 -40.82 -0.36 3.86 16 29 H 0.13 1.67 6.71 -52.49 -0.35 1.32 16 30 H 0.13 2.47 8.05 -52.49 -0.42 2.05 16 31 H 0.14 3.46 6.20 -52.49 -0.33 3.14 16 32 H 0.29 6.18 8.30 -40.82 -0.34 5.84 16 33 H 0.14 2.96 8.06 -52.49 -0.42 2.53 16 34 H 0.13 2.25 7.79 -52.49 -0.41 1.84 16 LS Contribution 306.65 15.07 4.62 4.62 Total: -1.00 -26.90 306.65 -7.46 -34.36 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -3.09 Total: 8.80 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -4.13 Total: -14.61 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.09 Total: -39.47 kcal Atomic # 9 Polarization: -5.72 SS G_CDS: 0.07 Total: -5.64 kcal Atomic # 14 Polarization: 16.96 SS G_CDS: -5.03 Total: 11.93 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -26.90 -7.46 -34.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244828333.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.954 kcal (2) G-P(sol) polarization free energy of solvation -26.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds