Wall clock time and date at job start Tue Mar 31 2020 08:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.39685 * 119.99707 * 2 1 4 4 C 1.38963 * 120.00409 * 359.97438 * 3 2 1 5 5 C 1.38387 * 120.14710 * 180.02562 * 4 3 2 6 6 F 1.35102 * 119.92456 * 179.97438 * 5 4 3 7 7 C 1.38314 * 120.14848 * 359.73731 * 5 4 3 8 8 C 1.39335 * 120.00064 * 0.51124 * 7 5 4 9 9 C 1.48382 * 120.07177 * 179.76728 * 8 7 5 10 10 C 1.39015 * 120.42086 * 309.72236 * 9 8 7 11 11 C 1.40953 * 118.12814 * 180.02562 * 10 9 8 12 12 C 1.41380 * 120.57307 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99688 * 155.74584 * 12 11 10 14 14 C 1.39898 * 119.99932 * 335.74442 * 12 11 10 15 15 N 1.30869 * 119.99779 * 343.51222 * 14 12 11 16 16 Si 1.86791 * 120.00137 * 163.50975 * 14 12 11 17 17 H 1.48496 * 109.47333 * 94.73371 * 16 14 12 18 18 H 1.48498 * 109.47516 * 214.73966 * 16 14 12 19 19 H 1.48505 * 109.47158 * 334.73955 * 16 14 12 20 20 C 1.40805 * 118.85587 * 359.97438 * 11 10 9 21 21 N 1.31505 * 120.69461 * 359.97438 * 20 11 10 22 22 C 1.32166 * 122.07890 * 0.02562 * 21 20 11 23 23 F 1.35094 * 119.45965 * 179.97438 * 22 21 20 24 24 C 1.38704 * 119.99695 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47212 * 59.99742 * 1 2 3 26 26 H 1.09001 * 109.46702 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46882 * 299.99706 * 1 2 3 28 28 H 0.96998 * 119.99882 * 179.97438 * 2 1 3 29 29 H 1.08000 * 119.92414 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.99934 * 180.28259 * 7 5 4 31 31 H 1.07991 * 120.93492 * 0.04664 * 10 9 8 32 32 H 0.97000 * 119.99625 * 180.02562 * 15 14 12 33 33 H 1.07997 * 119.65258 * 179.72134 * 20 11 10 34 34 H 1.07992 * 120.07275 * 359.95800 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1634 1.2097 0.0000 4 6 1.4686 2.4132 -0.0005 5 6 2.1575 3.6134 -0.0011 6 9 1.4775 4.7808 -0.0021 7 6 3.5406 3.6205 0.0044 8 6 4.2435 2.4175 -0.0003 9 6 5.7273 2.4233 0.0004 10 6 6.4286 3.1960 -0.9182 11 6 7.8371 3.1649 -0.8747 12 6 8.6018 3.9301 -1.7849 13 1 9.6100 4.2224 -1.5310 14 6 8.0524 4.3087 -3.0146 15 7 6.9824 3.7058 -3.4665 16 14 8.8461 5.6746 -4.0113 17 1 9.7786 5.0847 -5.0050 18 1 7.7934 6.4475 -4.7182 19 1 9.5974 6.5778 -3.1029 20 6 8.4695 2.3585 0.0909 21 7 7.7607 1.6461 0.9391 22 6 6.4391 1.6512 0.9272 23 9 5.7637 0.8985 1.8229 24 6 3.5505 1.2097 0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9500 -0.8400 0.0004 29 1 0.3886 2.4118 -0.0014 30 1 4.0758 4.5586 0.0086 31 1 5.9089 3.8032 -1.6444 32 1 6.6017 3.9681 -4.3193 33 1 9.5481 2.3215 0.1328 34 1 4.0916 0.2752 0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244828333.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:59 Heat of formation + Delta-G solvation = -55.587492 kcal Electronic energy + Delta-G solvation = -22039.609904 eV Core-core repulsion = 18379.008446 eV Total energy + Delta-G solvation = -3660.601458 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.91829 -49.42284 -40.69475 -39.77990 -36.59833 -36.00807 -33.52940 -32.21841 -31.00015 -29.85972 -27.42315 -26.83335 -24.52629 -23.98924 -23.08063 -21.85940 -19.50280 -18.69321 -18.43920 -17.93315 -17.43928 -17.17368 -16.81863 -16.59508 -16.46736 -16.21293 -15.73811 -15.35095 -15.06905 -14.92261 -14.26071 -14.13481 -14.02448 -13.74801 -13.62996 -13.28811 -13.16185 -12.96119 -12.85437 -12.67617 -12.48582 -12.24578 -11.83580 -11.23844 -11.16811 -10.43157 -10.32281 -9.79204 -9.28305 -8.79085 -8.48023 -6.50982 -0.08189 0.34867 0.67385 0.87837 1.42220 1.49061 1.58291 2.17065 2.42971 2.53282 2.69799 3.20080 3.33025 3.49747 3.61991 4.07177 4.08978 4.20405 4.34311 4.41289 4.53173 4.63106 4.69591 4.77763 4.91868 4.95751 5.05296 5.08657 5.13103 5.18692 5.46646 5.63129 5.70487 5.75925 5.90483 6.29288 6.34733 6.60070 6.63983 6.74566 7.30824 8.15287 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.015850 B = 0.005127 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.175328 B = 5460.477287 C = 6475.245218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.744 5.744 3 C 0.247 3.753 4 C -0.232 4.232 5 C 0.140 3.860 6 F -0.141 7.141 7 C -0.212 4.212 8 C 0.034 3.966 9 C -0.096 4.096 10 C -0.112 4.112 11 C 0.035 3.965 12 C -0.458 4.458 13 H 0.100 0.900 14 C 0.036 3.964 15 N -0.809 5.809 16 Si 0.989 3.011 17 H -0.260 1.260 18 H -0.268 1.268 19 H -0.253 1.253 20 C -0.001 4.001 21 N -0.501 5.501 22 C 0.142 3.858 23 F -0.141 7.141 24 C -0.194 4.194 25 H 0.056 0.944 26 H 0.101 0.899 27 H 0.057 0.943 28 H 0.410 0.590 29 H 0.158 0.842 30 H 0.122 0.878 31 H 0.132 0.868 32 H 0.296 0.704 33 H 0.158 0.842 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.150 -2.225 0.262 11.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.373 5.373 3 C 0.142 3.858 4 C -0.256 4.256 5 C 0.120 3.880 6 F -0.120 7.120 7 C -0.233 4.233 8 C 0.033 3.967 9 C -0.100 4.100 10 C -0.138 4.138 11 C 0.030 3.970 12 C -0.486 4.486 13 H 0.118 0.882 14 C -0.182 4.182 15 N -0.433 5.433 16 Si 0.809 3.191 17 H -0.184 1.184 18 H -0.193 1.193 19 H -0.176 1.176 20 C -0.162 4.162 21 N -0.213 5.213 22 C -0.011 4.011 23 F -0.121 7.121 24 C -0.216 4.216 25 H 0.075 0.925 26 H 0.119 0.881 27 H 0.076 0.924 28 H 0.246 0.754 29 H 0.176 0.824 30 H 0.140 0.860 31 H 0.149 0.851 32 H 0.107 0.893 33 H 0.176 0.824 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.224 -2.761 0.716 11.581 hybrid contribution 0.102 0.669 -0.818 1.061 sum -11.122 -2.092 -0.101 11.317 Atomic orbital electron populations 1.21793 0.78060 1.04382 1.01531 1.44564 1.06993 1.04267 1.81434 1.17285 0.89724 0.87246 0.91593 1.20590 1.01229 0.89177 1.14594 1.17198 0.88952 0.81331 1.00549 1.91460 1.79952 1.46675 1.93895 1.20870 0.92667 0.98461 1.11283 1.18187 0.90706 0.92920 0.94912 1.19278 0.92624 1.00386 0.97730 1.21723 0.94078 0.99745 0.98209 1.18817 0.92870 0.91861 0.93441 1.19944 1.01629 1.27529 0.99488 0.88225 1.26911 0.94742 0.97850 0.98688 1.69823 1.19179 1.34925 1.19371 0.85060 0.78804 0.77317 0.77938 1.18444 1.19266 1.17612 1.22610 0.98782 0.98104 0.96719 1.66276 1.06643 1.22416 1.26008 1.17654 0.86932 1.01530 0.95025 1.91388 1.78408 1.75315 1.66984 1.20671 0.92719 0.97466 1.10779 0.92518 0.88063 0.92426 0.75429 0.82398 0.85953 0.85059 0.89262 0.82437 0.86038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.18 9.94 127.77 1.27 2.45 16 2 N -0.74 -15.65 5.89 -360.92 -2.13 -17.78 16 3 C 0.25 7.24 6.65 38.17 0.25 7.50 16 4 C -0.23 -6.66 9.28 22.48 0.21 -6.46 16 5 C 0.14 4.69 7.29 22.32 0.16 4.85 16 6 F -0.14 -4.55 17.26 44.97 0.78 -3.78 16 7 C -0.21 -8.23 9.51 22.55 0.21 -8.02 16 8 C 0.03 1.44 5.32 -20.07 -0.11 1.33 16 9 C -0.10 -4.63 5.48 -19.95 -0.11 -4.74 16 10 C -0.11 -5.67 8.28 23.12 0.19 -5.48 16 11 C 0.03 1.77 5.59 -21.21 -0.12 1.65 16 12 C -0.46 -21.98 9.08 23.45 0.21 -21.77 16 13 H 0.10 4.42 7.90 -2.91 -0.02 4.40 16 14 C 0.04 1.62 5.19 85.24 0.44 2.07 16 15 N -0.81 -38.56 10.90 21.82 0.24 -38.32 16 16 Si 0.99 34.01 29.59 68.60 2.03 36.04 16 17 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 18 H -0.27 -8.97 7.11 99.48 0.71 -8.26 16 19 H -0.25 -8.47 7.11 99.48 0.71 -7.76 16 20 C 0.00 -0.03 10.96 85.37 0.94 0.91 16 21 N -0.50 -25.44 10.33 -193.73 -2.00 -27.44 16 22 C 0.14 7.05 8.30 85.09 0.71 7.76 16 23 F -0.14 -6.63 15.91 44.97 0.72 -5.91 16 24 C -0.19 -7.02 8.71 22.62 0.20 -6.82 16 25 H 0.06 0.76 7.94 -2.39 -0.02 0.74 16 26 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.76 7.95 -2.39 -0.02 0.74 16 28 H 0.41 7.55 8.84 -92.71 -0.82 6.73 16 29 H 0.16 3.52 6.71 -2.91 -0.02 3.50 16 30 H 0.12 4.84 8.05 -2.91 -0.02 4.81 16 31 H 0.13 6.78 6.20 -2.92 -0.02 6.76 16 32 H 0.30 12.72 8.30 -92.71 -0.77 11.95 16 33 H 0.16 6.83 8.06 -2.91 -0.02 6.81 16 34 H 0.12 4.41 7.79 -2.91 -0.02 4.39 16 Total: -1.00 -58.66 306.65 4.44 -54.22 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.34 Total: 27.74 kcal Atomic # 6 Polarization: -29.23 SS G_CDS: 4.46 Total: -24.77 kcal Atomic # 7 Polarization: -79.65 SS G_CDS: -3.89 Total: -83.54 kcal Atomic # 9 Polarization: -11.18 SS G_CDS: 1.49 Total: -9.69 kcal Atomic # 14 Polarization: 34.01 SS G_CDS: 2.03 Total: 36.04 kcal Total: -58.66 4.44 -54.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244828333.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.366 kcal (2) G-P(sol) polarization free energy of solvation -58.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds