Wall clock time and date at job start Tue Mar 31 2020 07:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38612 * 120.08907 * 2 1 4 4 N 1.39854 * 120.01667 * 0.02562 * 3 2 1 5 5 C 1.39159 * 119.96145 * 180.29659 * 3 2 1 6 6 F 1.35099 * 119.93560 * 179.72182 * 5 3 2 7 7 C 1.38369 * 120.13053 * 359.44122 * 5 3 2 8 8 C 1.38063 * 120.17587 * 0.55787 * 7 5 3 9 9 C 1.39276 * 120.08864 * 180.02562 * 2 1 3 10 10 C 1.48382 * 120.06237 * 0.02562 * 9 2 1 11 11 C 1.39006 * 120.41891 * 244.71958 * 10 9 2 12 12 C 1.40957 * 118.12763 * 179.76788 * 11 10 9 13 13 C 1.41378 * 120.57321 * 180.26528 * 12 11 10 14 14 H 1.07998 * 120.00078 * 203.71608 * 13 12 11 15 15 C 1.39897 * 120.00031 * 23.70856 * 13 12 11 16 16 N 1.30857 * 120.00207 * 17.44748 * 15 13 12 17 17 Si 1.86803 * 119.99982 * 197.43919 * 15 13 12 18 18 H 1.48502 * 109.46710 * 60.00364 * 17 15 13 19 19 H 1.48496 * 109.47260 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47158 * 300.00626 * 17 15 13 21 21 C 1.40795 * 118.85452 * 0.50966 * 12 11 10 22 22 N 1.31506 * 120.70033 * 359.73048 * 21 12 11 23 23 C 1.32167 * 122.07057 * 0.02562 * 22 21 12 24 24 F 1.35102 * 119.45469 * 179.97438 * 23 22 21 25 25 H 1.09008 * 109.47011 * 90.00885 * 1 2 3 26 26 H 1.09005 * 109.47488 * 210.00022 * 1 2 3 27 27 H 1.08999 * 109.47653 * 330.00732 * 1 2 3 28 28 H 0.97004 * 120.00113 * 0.02562 * 4 3 2 29 29 H 0.97000 * 119.99662 * 179.72379 * 4 3 2 30 30 H 1.08010 * 119.91246 * 180.25644 * 7 5 3 31 31 H 1.07997 * 119.97729 * 179.70414 * 8 7 5 32 32 H 1.08004 * 120.93834 * 0.02562 * 11 10 9 33 33 H 0.97000 * 120.00243 * 179.97438 * 16 15 13 34 34 H 1.08000 * 119.65517 * 179.75414 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2019 1.1993 0.0000 4 7 1.5048 2.4118 0.0005 5 6 3.5934 1.1962 -0.0062 6 9 4.2702 2.3655 -0.0119 7 6 4.2854 -0.0020 -0.0008 8 6 3.5989 -1.1998 -0.0007 9 6 2.2052 -1.2051 -0.0005 10 6 1.4667 -2.4921 -0.0017 11 6 1.5599 -3.3580 1.0817 12 6 0.8341 -4.5653 1.0318 13 6 0.8871 -5.4812 2.1075 14 1 0.6711 -6.5258 1.9385 15 6 1.2196 -5.0345 3.3908 16 7 1.1482 -3.7600 3.6789 17 14 1.7653 -6.2573 4.6933 18 1 2.9885 -6.9607 4.2302 19 1 2.0574 -5.5360 5.9580 20 1 0.6835 -7.2473 4.9271 21 6 0.0596 -4.8458 -0.1100 22 7 0.0081 -3.9955 -1.1119 23 6 0.6715 -2.8525 -1.0970 24 9 0.5810 -2.0180 -2.1556 25 1 -0.3633 -0.0002 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 0.5348 2.4136 0.0013 29 1 1.9914 3.2509 0.0046 30 1 5.3655 -0.0003 -0.0015 31 1 4.1422 -2.1332 -0.0013 32 1 2.1680 -3.1108 1.9393 33 1 1.3784 -3.4503 4.5689 34 1 -0.4985 -5.7689 -0.1636 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245463261.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:45 Heat of formation + Delta-G solvation = -61.956277 kcal Electronic energy + Delta-G solvation = -22507.846435 eV Core-core repulsion = 18846.968806 eV Total energy + Delta-G solvation = -3660.877629 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.77798 -49.37242 -40.80523 -39.69100 -36.00538 -35.86133 -34.07095 -32.38303 -31.56795 -29.13852 -27.86167 -27.35048 -24.61222 -23.57056 -22.54447 -22.04269 -19.37981 -18.65374 -18.44993 -18.11601 -17.67411 -17.47551 -16.70721 -16.56908 -16.49921 -16.03494 -15.58449 -15.06605 -14.74962 -14.49069 -14.30283 -14.19913 -14.03191 -13.80251 -13.58980 -13.36500 -13.08355 -12.95360 -12.86794 -12.70896 -12.29540 -12.10003 -11.87943 -11.62611 -11.19795 -10.31861 -10.28086 -9.63111 -9.27819 -8.76536 -8.48202 -6.47384 0.02538 0.44147 0.62837 0.86560 1.43462 1.52433 1.56490 2.18463 2.56029 2.65783 2.81847 3.26742 3.30577 3.49816 3.68733 3.87319 4.08616 4.22735 4.29345 4.55861 4.65320 4.67217 4.69898 4.84348 4.94649 5.02811 5.12038 5.16484 5.22047 5.32783 5.56975 5.68858 5.76523 5.83050 5.95527 6.38441 6.40975 6.64244 6.67143 6.85982 7.36196 8.17253 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.016899 B = 0.005467 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.487241 B = 5120.582793 C = 6042.540558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.134 4.134 3 C 0.192 3.808 4 N -0.861 5.861 5 C 0.002 3.998 6 F -0.144 7.144 7 C -0.102 4.102 8 C -0.143 4.143 9 C -0.007 4.007 10 C -0.084 4.084 11 C -0.114 4.114 12 C 0.037 3.963 13 C -0.460 4.460 14 H 0.097 0.903 15 C 0.038 3.962 16 N -0.806 5.806 17 Si 0.987 3.013 18 H -0.258 1.258 19 H -0.270 1.270 20 H -0.256 1.256 21 C -0.005 4.005 22 N -0.503 5.503 23 C 0.145 3.855 24 F -0.144 7.144 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.084 0.916 28 H 0.410 0.590 29 H 0.408 0.592 30 H 0.160 0.840 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.296 0.704 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.736 7.839 0.188 8.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.139 4.139 3 C 0.086 3.914 4 N -0.404 5.404 5 C -0.022 4.022 6 F -0.123 7.123 7 C -0.121 4.121 8 C -0.163 4.163 9 C -0.008 4.008 10 C -0.088 4.088 11 C -0.139 4.139 12 C 0.032 3.968 13 C -0.488 4.488 14 H 0.115 0.885 15 C -0.180 4.180 16 N -0.430 5.430 17 Si 0.807 3.193 18 H -0.182 1.182 19 H -0.194 1.194 20 H -0.180 1.180 21 C -0.167 4.167 22 N -0.215 5.215 23 C -0.008 4.008 24 F -0.123 7.123 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.103 0.897 28 H 0.241 0.759 29 H 0.239 0.761 30 H 0.178 0.822 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.107 0.893 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.274 7.920 -0.397 8.579 hybrid contribution 0.380 0.291 0.946 1.061 sum 3.654 8.211 0.549 9.004 Atomic orbital electron populations 1.20527 0.90354 1.02303 1.02115 1.19312 0.96518 0.90190 1.07836 1.17348 0.89532 0.87694 0.96871 1.42308 1.09597 1.03927 1.84553 1.17153 0.88022 0.82030 1.14956 1.91404 1.79846 1.45936 1.95077 1.20987 1.01445 0.89703 0.99984 1.20914 0.92314 0.98425 1.04663 1.18551 0.93464 0.90993 0.97821 1.19151 0.99573 0.95567 0.94492 1.21662 1.00670 0.94759 0.96805 1.18781 0.90419 0.93481 0.94093 1.19883 1.40165 0.96576 0.92177 0.88478 1.26858 0.91742 0.97631 1.01770 1.69814 1.32228 1.17302 1.23675 0.85146 0.79959 0.78248 0.75926 1.18178 1.19442 1.17995 1.22542 1.03391 0.99447 0.91280 1.66261 1.21161 1.02995 1.31095 1.17664 1.06212 0.90381 0.86578 1.91385 1.95848 1.69225 1.55890 0.91269 0.93763 0.89693 0.75871 0.76144 0.82194 0.85028 0.85209 0.89322 0.82836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.25 8.27 71.23 0.59 -2.66 16 2 C -0.13 -4.78 5.76 -19.53 -0.11 -4.89 16 3 C 0.19 5.87 6.74 38.17 0.26 6.12 16 4 N -0.86 -19.43 8.99 -51.29 -0.46 -19.89 16 5 C 0.00 0.07 7.31 22.52 0.16 0.23 16 6 F -0.14 -3.98 16.63 44.97 0.75 -3.23 16 7 C -0.10 -3.04 10.00 22.26 0.22 -2.82 16 8 C -0.14 -5.02 9.73 22.50 0.22 -4.80 16 9 C -0.01 -0.27 5.02 -20.05 -0.10 -0.37 16 10 C -0.08 -3.88 4.13 -19.95 -0.08 -3.96 16 11 C -0.11 -5.55 8.50 23.12 0.20 -5.36 16 12 C 0.04 1.84 5.59 -21.22 -0.12 1.72 16 13 C -0.46 -21.73 9.08 23.45 0.21 -21.51 16 14 H 0.10 4.26 7.90 -2.91 -0.02 4.24 16 15 C 0.04 1.69 5.18 85.24 0.44 2.14 16 16 N -0.81 -37.59 10.92 21.82 0.24 -37.35 16 17 Si 0.99 33.45 29.59 68.60 2.03 35.48 16 18 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 19 H -0.27 -8.81 7.11 99.48 0.71 -8.10 16 20 H -0.26 -8.39 7.11 99.48 0.71 -7.68 16 21 C -0.01 -0.25 10.96 85.37 0.94 0.69 16 22 N -0.50 -25.08 10.34 -193.73 -2.00 -27.08 16 23 C 0.14 7.01 7.58 85.09 0.65 7.66 16 24 F -0.14 -6.67 15.67 44.97 0.70 -5.96 16 25 H 0.07 2.31 7.56 -2.38 -0.02 2.29 16 26 H 0.04 1.77 6.92 -2.38 -0.02 1.75 16 27 H 0.08 2.23 6.54 -2.39 -0.02 2.22 16 28 H 0.41 7.87 6.82 -92.71 -0.63 7.24 16 29 H 0.41 7.62 8.31 -92.71 -0.77 6.85 16 30 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 31 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 32 H 0.13 6.50 6.19 -2.91 -0.02 6.48 16 33 H 0.30 12.48 8.30 -92.71 -0.77 11.71 16 34 H 0.15 6.63 8.06 -2.91 -0.02 6.61 16 Total: -1.00 -56.54 300.02 4.51 -52.03 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: -0.21 Total: 33.83 kcal Atomic # 6 Polarization: -31.29 SS G_CDS: 3.47 Total: -27.82 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -2.23 Total: -84.32 kcal Atomic # 9 Polarization: -10.65 SS G_CDS: 1.45 Total: -9.20 kcal Atomic # 14 Polarization: 33.45 SS G_CDS: 2.03 Total: 35.48 kcal Total: -56.54 4.51 -52.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245463261.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.927 kcal (2) G-P(sol) polarization free energy of solvation -56.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds