Wall clock time and date at job start Tue Mar 31 2020 06:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39589 * 120.45653 * 10.74471 * 3 2 1 5 5 C 1.37695 * 120.18570 * 180.02562 * 4 3 2 6 6 C 1.39829 * 121.17065 * 359.97438 * 5 4 3 7 7 C 1.48301 * 119.53629 * 179.97438 * 6 5 4 8 8 C 1.41550 * 119.95031 * 180.02562 * 7 6 5 9 9 C 1.35760 * 119.64075 * 179.97438 * 8 7 6 10 10 C 1.40947 * 119.39469 * 0.02562 * 9 8 7 11 11 N 1.32301 * 133.28021 * 180.02562 * 10 9 8 12 12 N 1.28657 * 109.51701 * 179.97438 * 11 10 9 13 13 C 1.30784 * 110.30404 * 0.02562 * 12 11 10 14 14 N 1.36134 * 107.48339 * 359.97438 * 13 12 11 15 15 C 1.36149 * 119.95612 * 359.97438 * 7 6 5 16 16 C 1.38627 * 120.92633 * 0.25614 * 6 5 4 17 17 C 1.40587 * 119.73055 * 359.51575 * 16 6 5 18 18 C 1.40848 * 120.55076 * 180.20386 * 17 16 6 19 19 H 1.07998 * 119.99929 * 149.76716 * 18 17 16 20 20 C 1.40229 * 120.00104 * 329.76881 * 18 17 16 21 21 N 1.30669 * 119.99997 * 162.31069 * 20 18 17 22 22 Si 1.86805 * 120.00098 * 342.30869 * 20 18 17 23 23 H 1.48500 * 109.46753 * 95.42900 * 22 20 18 24 24 H 1.48497 * 109.46934 * 215.42571 * 22 20 18 25 25 H 1.48496 * 109.46918 * 335.42758 * 22 20 18 26 26 H 1.08001 * 119.90902 * 0.02562 * 4 3 2 27 27 H 1.08004 * 119.41533 * 179.97438 * 5 4 3 28 28 H 1.07995 * 120.18333 * 359.95344 * 8 7 6 29 29 H 1.07998 * 120.30113 * 179.97438 * 9 8 7 30 30 H 1.08000 * 126.25766 * 179.73886 * 13 12 11 31 31 H 1.08004 * 119.81169 * 359.97438 * 15 7 6 32 32 H 1.08004 * 120.13299 * 179.72409 * 16 6 5 33 33 H 0.97000 * 119.99905 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2762 -1.1812 -0.2243 5 6 4.6531 -1.1743 -0.2226 6 6 5.3706 0.0048 0.0011 7 6 6.8532 -0.0294 -0.0043 8 6 7.5884 1.1589 0.2217 9 6 8.9454 1.1203 0.2159 10 6 9.6016 -0.1053 -0.0163 11 7 10.8763 -0.4538 -0.0806 12 7 10.9657 -1.7147 -0.3197 13 6 9.7736 -2.2428 -0.4222 14 7 8.8667 -1.2451 -0.2339 15 6 7.5054 -1.2039 -0.2257 16 6 4.7156 1.2042 0.2336 17 6 3.3102 1.2421 0.2355 18 6 2.6270 2.4521 0.4656 19 1 1.6602 2.6205 0.0146 20 6 3.2021 3.4381 1.2801 21 7 2.7634 4.6678 1.2261 22 14 4.5953 2.9937 2.4425 23 1 5.8966 3.2883 1.7907 24 1 4.4739 3.7921 3.6887 25 1 4.5227 1.5476 2.7720 26 1 2.7425 -2.1037 -0.3998 27 1 5.1884 -2.0960 -0.3971 28 1 7.0726 2.0913 0.3975 29 1 9.5169 2.0206 0.3867 30 1 9.5496 -3.2800 -0.6235 31 1 6.9399 -2.1081 -0.3964 32 1 5.2826 2.1065 0.4093 33 1 3.1609 5.3497 1.7899 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245660745.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:09 Heat of formation + Delta-G solvation = 153.510801 kcal Electronic energy + Delta-G solvation = -21025.213672 eV Core-core repulsion = 17824.368583 eV Total energy + Delta-G solvation = -3200.845089 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.086 amu Computer time = 8.04 seconds Orbital eigenvalues (eV) -43.49606 -39.11716 -37.51725 -35.39601 -34.29497 -34.04942 -32.30622 -31.05367 -29.67272 -28.77994 -26.11301 -24.30653 -23.91313 -22.49859 -21.73448 -21.20057 -18.20906 -18.05369 -18.00244 -16.95514 -16.47587 -15.99437 -15.38995 -15.00970 -14.68296 -14.35482 -14.03427 -13.34112 -13.21806 -13.04663 -12.69223 -12.56435 -12.16880 -12.09387 -11.86212 -11.70543 -11.51679 -11.42015 -11.27453 -11.13258 -10.75199 -10.63158 -10.36798 -10.11325 -9.72347 -9.55748 -8.38861 -8.18187 -7.60005 -7.47542 -5.03413 0.45171 0.89546 1.82125 2.23716 2.29885 2.68229 2.75242 2.89403 2.97002 3.27299 3.54220 3.67250 3.90915 4.03274 4.22173 4.38142 4.46994 4.73664 4.80393 4.87214 4.99186 5.09868 5.37059 5.51495 5.58582 5.78872 5.81767 5.98856 5.99930 6.12473 6.28225 6.36486 6.63376 6.69225 6.81285 7.02109 7.09610 7.27884 7.48089 7.78437 8.03525 8.18178 8.48535 8.55809 9.51111 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.018717 B = 0.005122 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.612646 B = 5465.625098 C = 6763.498178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.293 3.707 3 C -0.160 4.160 4 C -0.011 4.011 5 C -0.245 4.245 6 C 0.011 3.989 7 C -0.036 4.036 8 C -0.075 4.075 9 C -0.087 4.087 10 C 0.193 3.807 11 N -0.299 5.299 12 N -0.259 5.259 13 C 0.109 3.891 14 N -0.384 5.384 15 C 0.053 3.947 16 C -0.208 4.208 17 C 0.124 3.876 18 C -0.408 4.408 19 H 0.100 0.900 20 C 0.081 3.919 21 N -0.768 5.768 22 Si 0.906 3.094 23 H -0.260 1.260 24 H -0.280 1.280 25 H -0.234 1.234 26 H 0.109 0.891 27 H 0.105 0.895 28 H 0.153 0.847 29 H 0.157 0.843 30 H 0.224 0.776 31 H 0.178 0.822 32 H 0.114 0.886 33 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.538 -6.590 -0.296 11.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.018 4.018 3 C -0.166 4.166 4 C -0.032 4.032 5 C -0.264 4.264 6 C 0.010 3.990 7 C -0.040 4.040 8 C -0.099 4.099 9 C -0.108 4.108 10 C -0.056 4.056 11 N -0.146 5.146 12 N -0.098 5.098 13 C -0.173 4.173 14 N -0.062 5.062 15 C -0.070 4.070 16 C -0.227 4.227 17 C 0.118 3.882 18 C -0.434 4.434 19 H 0.118 0.882 20 C -0.144 4.144 21 N -0.388 5.388 22 Si 0.730 3.270 23 H -0.186 1.186 24 H -0.207 1.207 25 H -0.157 1.157 26 H 0.127 0.873 27 H 0.123 0.877 28 H 0.170 0.830 29 H 0.175 0.825 30 H 0.241 0.759 31 H 0.194 0.806 32 H 0.132 0.868 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.387 -6.307 -0.240 11.312 hybrid contribution -0.497 -0.075 0.415 0.652 sum 8.890 -6.382 0.176 10.945 Atomic orbital electron populations 1.81064 1.12629 1.09511 1.13699 1.25654 0.92618 0.91793 0.91719 1.16927 0.83513 0.94144 1.21981 1.20488 0.93457 0.95306 0.93973 1.20044 0.93308 0.96114 1.16976 1.18039 0.87673 0.94449 0.98878 1.18702 0.94646 0.91419 0.99219 1.21561 0.93096 0.99315 0.95906 1.20182 0.93838 0.94459 1.02309 1.22446 0.89188 0.89346 1.04639 1.74914 1.12555 1.05130 1.21997 1.74128 1.19892 1.01936 1.13883 1.26416 0.84065 0.96441 1.10379 1.43768 1.07414 1.10031 1.45020 1.21751 0.79666 1.01218 1.04330 1.21011 0.93909 0.96181 1.11637 1.18329 0.90476 0.90662 0.88766 1.19721 1.05405 0.95650 1.22656 0.88194 1.26413 0.97385 0.93552 0.97092 1.69585 1.36418 1.01877 1.30924 0.86385 0.79563 0.82043 0.78982 1.18620 1.20683 1.15678 0.87280 0.87717 0.82990 0.82496 0.75924 0.80550 0.86835 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -10.99 18.54 41.84 0.78 -10.21 16 2 C 0.29 6.20 14.36 -22.47 -0.32 5.87 16 3 C -0.16 -3.15 5.95 -104.12 -0.62 -3.76 16 4 C -0.01 -0.19 9.74 -39.28 -0.38 -0.57 16 5 C -0.24 -3.64 9.35 -39.18 -0.37 -4.01 16 6 C 0.01 0.18 5.86 -105.02 -0.62 -0.44 16 7 C -0.04 -0.51 5.84 -105.25 -0.61 -1.12 16 8 C -0.07 -1.00 9.40 -39.21 -0.37 -1.36 16 9 C -0.09 -1.11 10.09 -39.44 -0.40 -1.51 16 10 C 0.19 2.83 7.91 -156.00 -1.23 1.60 16 11 N -0.30 -4.90 12.30 31.17 0.38 -4.52 16 12 N -0.26 -3.94 12.19 29.86 0.36 -3.57 16 13 C 0.11 1.29 12.97 -89.13 -1.16 0.13 16 14 N -0.38 -4.97 2.95 -63.67 -0.19 -5.16 16 15 C 0.05 0.63 10.37 -16.36 -0.17 0.46 16 16 C -0.21 -3.84 6.53 -38.55 -0.25 -4.09 16 17 C 0.12 2.57 5.26 -104.68 -0.55 2.02 16 18 C -0.41 -9.40 9.02 -37.85 -0.34 -9.74 16 19 H 0.10 2.55 7.67 -52.49 -0.40 2.14 16 20 C 0.08 1.77 5.42 -17.30 -0.09 1.68 16 21 N -0.77 -17.46 13.92 55.56 0.77 -16.69 16 22 Si 0.91 16.70 24.53 -169.99 -4.17 12.53 16 23 H -0.26 -4.26 6.01 56.52 0.34 -3.92 16 24 H -0.28 -5.13 7.11 56.52 0.40 -4.73 16 25 H -0.23 -4.40 6.84 56.52 0.39 -4.02 16 26 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 27 H 0.10 1.20 6.06 -52.48 -0.32 0.89 16 28 H 0.15 1.97 5.46 -52.49 -0.29 1.69 16 29 H 0.16 1.62 8.06 -52.49 -0.42 1.19 16 30 H 0.22 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.18 1.58 6.03 -52.48 -0.32 1.27 16 32 H 0.11 2.01 2.91 -52.48 -0.15 1.86 16 33 H 0.30 5.98 8.29 -40.82 -0.34 5.64 16 LS Contribution 293.04 15.07 4.42 4.42 Total: -1.00 -26.80 293.04 -7.09 -33.88 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -1.96 Total: 4.17 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -7.49 Total: -14.85 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 2.11 Total: -40.15 kcal Atomic # 14 Polarization: 16.70 SS G_CDS: -4.17 Total: 12.53 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -26.80 -7.09 -33.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245660745.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.393 kcal (2) G-P(sol) polarization free energy of solvation -26.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.04 seconds