Wall clock time and date at job start Tue Mar 31 2020 06:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39589 * 120.45653 * 10.74471 * 3 2 1 5 5 C 1.37695 * 120.18570 * 180.02562 * 4 3 2 6 6 C 1.39829 * 121.17065 * 359.97438 * 5 4 3 7 7 C 1.48301 * 119.53629 * 179.97438 * 6 5 4 8 8 C 1.41550 * 119.95031 * 180.02562 * 7 6 5 9 9 C 1.35760 * 119.64075 * 179.97438 * 8 7 6 10 10 C 1.40947 * 119.39469 * 0.02562 * 9 8 7 11 11 N 1.32301 * 133.28021 * 180.02562 * 10 9 8 12 12 N 1.28657 * 109.51701 * 179.97438 * 11 10 9 13 13 C 1.30784 * 110.30404 * 0.02562 * 12 11 10 14 14 N 1.36134 * 107.48339 * 359.97438 * 13 12 11 15 15 C 1.36149 * 119.95612 * 359.97438 * 7 6 5 16 16 C 1.38627 * 120.92633 * 0.25614 * 6 5 4 17 17 C 1.40587 * 119.73055 * 359.51575 * 16 6 5 18 18 C 1.40848 * 120.55076 * 180.20386 * 17 16 6 19 19 H 1.07998 * 119.99929 * 149.76716 * 18 17 16 20 20 C 1.40229 * 120.00104 * 329.76881 * 18 17 16 21 21 N 1.30669 * 119.99997 * 162.31069 * 20 18 17 22 22 Si 1.86805 * 120.00098 * 342.30869 * 20 18 17 23 23 H 1.48500 * 109.46753 * 95.42900 * 22 20 18 24 24 H 1.48497 * 109.46934 * 215.42571 * 22 20 18 25 25 H 1.48496 * 109.46918 * 335.42758 * 22 20 18 26 26 H 1.08001 * 119.90902 * 0.02562 * 4 3 2 27 27 H 1.08004 * 119.41533 * 179.97438 * 5 4 3 28 28 H 1.07995 * 120.18333 * 359.95344 * 8 7 6 29 29 H 1.07998 * 120.30113 * 179.97438 * 9 8 7 30 30 H 1.08000 * 126.25766 * 179.73886 * 13 12 11 31 31 H 1.08004 * 119.81169 * 359.97438 * 15 7 6 32 32 H 1.08004 * 120.13299 * 179.72409 * 16 6 5 33 33 H 0.97000 * 119.99905 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2762 -1.1812 -0.2243 5 6 4.6531 -1.1743 -0.2226 6 6 5.3706 0.0048 0.0011 7 6 6.8532 -0.0294 -0.0043 8 6 7.5884 1.1589 0.2217 9 6 8.9454 1.1203 0.2159 10 6 9.6016 -0.1053 -0.0163 11 7 10.8763 -0.4538 -0.0806 12 7 10.9657 -1.7147 -0.3197 13 6 9.7736 -2.2428 -0.4222 14 7 8.8667 -1.2451 -0.2339 15 6 7.5054 -1.2039 -0.2257 16 6 4.7156 1.2042 0.2336 17 6 3.3102 1.2421 0.2355 18 6 2.6270 2.4521 0.4656 19 1 1.6602 2.6205 0.0146 20 6 3.2021 3.4381 1.2801 21 7 2.7634 4.6678 1.2261 22 14 4.5953 2.9937 2.4425 23 1 5.8966 3.2883 1.7907 24 1 4.4739 3.7921 3.6887 25 1 4.5227 1.5476 2.7720 26 1 2.7425 -2.1037 -0.3998 27 1 5.1884 -2.0960 -0.3971 28 1 7.0726 2.0913 0.3975 29 1 9.5169 2.0206 0.3867 30 1 9.5496 -3.2800 -0.6235 31 1 6.9399 -2.1081 -0.3964 32 1 5.2826 2.1065 0.4093 33 1 3.1609 5.3497 1.7899 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245660745.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:59 Heat of formation + Delta-G solvation = 141.007113 kcal Electronic energy + Delta-G solvation = -21025.755873 eV Core-core repulsion = 17824.368583 eV Total energy + Delta-G solvation = -3201.387290 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.086 amu Computer time = 9.79 seconds Orbital eigenvalues (eV) -44.49887 -40.33587 -38.77591 -37.02747 -35.79939 -35.07523 -33.55239 -32.47771 -30.77530 -29.94620 -27.57866 -25.47461 -25.01088 -23.50462 -22.95200 -22.61622 -19.58346 -19.48612 -19.07517 -18.05066 -17.48655 -17.31072 -16.67078 -16.02176 -15.82041 -15.68677 -15.32744 -14.77746 -14.58161 -14.52033 -13.96936 -13.87260 -13.60136 -13.43591 -13.18761 -13.03719 -12.83904 -12.69230 -12.59398 -12.27316 -12.08097 -11.89930 -11.63209 -11.52933 -11.07793 -10.80088 -9.63535 -9.51454 -9.05059 -8.78817 -6.67483 -0.60141 -0.15228 0.53587 0.83491 1.25188 1.34802 1.41687 1.51660 1.71989 1.99726 2.04529 2.12126 2.54667 2.63197 3.06984 3.33182 3.48698 3.54287 3.61648 3.82753 3.90537 3.94635 4.16328 4.35958 4.53244 4.68918 4.72375 4.80072 4.96965 5.00222 5.10643 5.17714 5.28772 5.33295 5.62609 5.69700 5.83930 5.91946 6.03579 6.18944 6.50149 6.58106 6.90768 7.47731 8.01388 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.018717 B = 0.005122 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.612646 B = 5465.625098 C = 6763.498178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C 0.299 3.701 3 C -0.181 4.181 4 C -0.007 4.007 5 C -0.215 4.215 6 C 0.026 3.974 7 C -0.065 4.065 8 C -0.076 4.076 9 C -0.091 4.091 10 C 0.182 3.818 11 N -0.337 5.337 12 N -0.299 5.299 13 C 0.138 3.862 14 N -0.392 5.392 15 C 0.088 3.912 16 C -0.225 4.225 17 C 0.120 3.880 18 C -0.459 4.459 19 H 0.051 0.949 20 C 0.049 3.951 21 N -0.823 5.823 22 Si 0.950 3.050 23 H -0.227 1.227 24 H -0.282 1.282 25 H -0.237 1.237 26 H 0.143 0.857 27 H 0.159 0.841 28 H 0.151 0.849 29 H 0.173 0.827 30 H 0.276 0.724 31 H 0.219 0.781 32 H 0.117 0.883 33 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.377 -10.627 -0.581 16.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.205 5.205 2 C -0.010 4.010 3 C -0.187 4.187 4 C -0.028 4.028 5 C -0.234 4.234 6 C 0.024 3.976 7 C -0.069 4.069 8 C -0.100 4.100 9 C -0.112 4.112 10 C -0.068 4.068 11 N -0.183 5.183 12 N -0.136 5.136 13 C -0.145 4.145 14 N -0.071 5.071 15 C -0.034 4.034 16 C -0.244 4.244 17 C 0.115 3.885 18 C -0.487 4.487 19 H 0.069 0.931 20 C -0.170 4.170 21 N -0.446 5.446 22 Si 0.770 3.230 23 H -0.151 1.151 24 H -0.208 1.208 25 H -0.160 1.160 26 H 0.160 0.840 27 H 0.176 0.824 28 H 0.169 0.831 29 H 0.191 0.809 30 H 0.292 0.708 31 H 0.235 0.765 32 H 0.134 0.866 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.267 -10.351 -0.544 16.060 hybrid contribution -1.234 0.811 0.366 1.522 sum 11.033 -9.540 -0.178 14.586 Atomic orbital electron populations 1.81039 1.13666 1.10629 1.15125 1.26104 0.93164 0.90834 0.90899 1.17298 0.82786 0.95441 1.23184 1.20899 0.94319 0.95020 0.92526 1.20686 0.92782 0.97522 1.12430 1.18255 0.89147 0.93810 0.96359 1.18525 0.93302 0.92649 1.02391 1.21581 0.93233 0.99449 0.95766 1.20333 0.93752 0.94765 1.02386 1.22695 0.89145 0.90441 1.04521 1.74850 1.13820 1.06050 1.23539 1.74067 1.22005 1.01838 1.15718 1.27452 0.82720 0.97764 1.06600 1.43978 1.07860 1.09865 1.45409 1.22212 0.79272 1.01673 1.00250 1.21059 0.92723 0.97825 1.12843 1.18455 0.91791 0.90088 0.88181 1.19541 1.04594 0.98306 1.26235 0.93101 1.27090 0.99236 0.93018 0.97621 1.69631 1.39005 1.02920 1.33081 0.85746 0.78626 0.81312 0.77298 1.15065 1.20818 1.15992 0.83976 0.82397 0.83127 0.80931 0.70828 0.76468 0.86577 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -24.31 18.54 19.01 0.35 -23.96 16 2 C 0.30 12.94 14.36 88.33 1.27 14.21 16 3 C -0.18 -6.97 5.95 -19.54 -0.12 -7.09 16 4 C -0.01 -0.20 9.74 22.47 0.22 0.02 16 5 C -0.22 -5.01 9.35 22.53 0.21 -4.80 16 6 C 0.03 0.71 5.86 -20.12 -0.12 0.60 16 7 C -0.07 -1.48 5.84 -20.27 -0.12 -1.60 16 8 C -0.08 -1.78 9.40 22.51 0.21 -1.56 16 9 C -0.09 -2.08 10.09 22.36 0.23 -1.85 16 10 C 0.18 4.75 7.91 134.10 1.06 5.81 16 11 N -0.34 -10.29 12.30 -55.30 -0.68 -10.97 16 12 N -0.30 -8.14 12.19 -59.45 -0.72 -8.86 16 13 C 0.14 2.49 12.97 179.83 2.33 4.82 16 14 N -0.39 -8.03 2.95 -355.37 -1.05 -9.08 16 15 C 0.09 1.50 10.37 83.53 0.87 2.37 16 16 C -0.23 -7.92 6.53 22.94 0.15 -7.77 16 17 C 0.12 5.05 5.26 -19.90 -0.10 4.95 16 18 C -0.46 -22.74 9.02 23.39 0.21 -22.52 16 19 H 0.05 2.90 7.67 -2.91 -0.02 2.88 16 20 C 0.05 2.31 5.42 85.35 0.46 2.77 16 21 N -0.82 -40.43 13.92 21.87 0.30 -40.13 16 22 Si 0.95 34.49 24.53 68.60 1.68 36.18 16 23 H -0.23 -6.87 6.01 99.48 0.60 -6.28 16 24 H -0.28 -10.12 7.11 99.48 0.71 -9.41 16 25 H -0.24 -8.57 6.84 99.48 0.68 -7.89 16 26 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 27 H 0.16 2.08 6.06 -2.91 -0.02 2.06 16 28 H 0.15 3.53 5.46 -2.91 -0.02 3.51 16 29 H 0.17 3.19 8.06 -2.91 -0.02 3.16 16 30 H 0.28 1.60 8.06 -2.91 -0.02 1.58 16 31 H 0.22 1.79 6.03 -2.91 -0.02 1.77 16 32 H 0.12 3.97 2.91 -2.91 -0.01 3.96 16 33 H 0.30 13.12 8.29 -92.71 -0.77 12.35 16 Total: -1.00 -65.41 293.04 7.71 -57.70 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 1.06 Total: 10.80 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: 6.76 Total: -11.67 kcal Atomic # 7 Polarization: -91.20 SS G_CDS: -1.79 Total: -93.00 kcal Atomic # 14 Polarization: 34.49 SS G_CDS: 1.68 Total: 36.18 kcal Total: -65.41 7.71 -57.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245660745.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.702 kcal (2) G-P(sol) polarization free energy of solvation -65.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.80 seconds