Wall clock time and date at job start Tue Mar 31 2020 05:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42095 * 109.46794 * 2 1 4 4 C 1.81399 * 103.00117 * 243.61166 * 2 1 3 5 5 C 1.52997 * 109.47146 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.46901 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.46824 * 179.97438 * 6 5 4 8 8 C 1.34779 * 119.99901 * 179.97438 * 7 6 5 9 9 S 1.71197 * 120.00170 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99827 * 180.02562 * 8 7 6 11 11 C 1.47068 * 136.05938 * 359.63275 * 10 8 7 12 12 C 1.53762 * 87.88403 * 152.96404 * 11 10 8 13 13 C 1.50696 * 114.26255 * 139.79808 * 12 11 10 14 14 H 1.08004 * 119.99791 * 266.46845 * 13 12 11 15 15 C 1.37876 * 120.00841 * 86.47162 * 13 12 11 16 16 N 1.31518 * 119.99639 * 359.97438 * 15 13 12 17 17 Si 1.86791 * 120.00590 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47518 * 89.99987 * 17 15 13 19 19 H 1.48500 * 109.47377 * 209.99940 * 17 15 13 20 20 H 1.48498 * 109.47232 * 329.99956 * 17 15 13 21 21 C 1.47067 * 136.05563 * 180.02562 * 10 8 7 22 22 H 1.09002 * 109.47124 * 56.38663 * 1 2 3 23 23 H 1.09001 * 109.46975 * 296.38784 * 1 2 3 24 24 H 1.09004 * 109.47147 * 176.38748 * 1 2 3 25 25 H 1.08998 * 109.46898 * 300.00463 * 4 2 1 26 26 H 1.08997 * 109.46949 * 60.00084 * 4 2 1 27 27 H 1.09002 * 109.47190 * 300.00308 * 5 4 2 28 28 H 1.08997 * 109.47148 * 60.00182 * 5 4 2 29 29 H 1.08994 * 109.47506 * 299.99839 * 6 5 4 30 30 H 1.08997 * 109.47120 * 60.00105 * 6 5 4 31 31 H 0.97001 * 120.00177 * 0.02562 * 7 6 5 32 32 H 1.08999 * 113.46365 * 267.69353 * 11 10 8 33 33 H 1.08995 * 113.46569 * 38.13566 * 11 10 8 34 34 H 1.09004 * 114.39289 * 272.67305 * 12 11 10 35 35 H 0.96996 * 120.00568 * 180.02562 * 16 15 13 36 36 H 1.09005 * 113.47032 * 321.86947 * 21 10 8 37 37 H 1.09000 * 113.46747 * 92.24777 * 21 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2221 -0.7856 -1.5833 5 6 3.7424 -0.8628 -1.7375 6 6 4.0865 -1.5248 -3.0732 7 7 5.5422 -1.5981 -3.2211 8 6 6.0803 -2.1474 -4.3280 9 16 5.0627 -2.7587 -5.5616 10 7 7.4195 -2.2153 -4.4638 11 6 8.5867 -1.8124 -3.6650 12 6 9.3745 -2.9402 -4.3517 13 6 10.7899 -2.5737 -4.7164 14 1 11.0121 -2.1924 -5.7021 15 6 11.8015 -2.7251 -3.7918 16 7 11.5309 -3.1889 -2.5912 17 14 13.5561 -2.2714 -4.2441 18 1 13.8008 -0.8455 -3.9092 19 1 14.5008 -3.1277 -3.4829 20 1 13.7618 -2.4802 -5.6999 21 6 8.3566 -2.7188 -5.4792 22 1 -0.3633 0.5689 -0.8558 23 1 -0.3633 0.4567 0.9206 24 1 -0.3634 -1.0257 -0.0648 25 1 1.8031 -1.7915 -1.6084 26 1 1.8032 -0.1970 -2.3995 27 1 4.1617 0.1430 -1.7121 28 1 4.1609 -1.4516 -0.9213 29 1 3.6672 -2.5305 -3.0990 30 1 3.6680 -0.9356 -3.8892 31 1 6.1188 -1.2521 -2.5220 32 1 8.9553 -0.8156 -3.9073 33 1 8.4529 -1.9641 -2.5940 34 1 9.2935 -3.9098 -3.8602 35 1 12.2424 -3.2951 -1.9405 36 1 8.0269 -3.6429 -5.9542 37 1 8.6639 -1.9611 -6.2000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246354402.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:10 Heat of formation + Delta-G solvation = 5.576178 kcal Electronic energy + Delta-G solvation = -18104.774334 eV Core-core repulsion = 15136.109470 eV Total energy + Delta-G solvation = -2968.664864 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.58265 -37.39269 -36.02291 -34.02419 -32.75247 -29.99403 -29.33141 -26.62845 -25.69182 -24.89646 -22.45613 -21.85212 -19.48489 -17.89782 -17.47095 -17.04799 -16.71339 -16.12473 -15.64415 -15.10070 -14.90425 -14.61222 -14.55250 -14.17512 -13.51176 -13.33657 -13.18893 -12.62692 -12.56269 -12.32693 -12.17210 -11.88553 -11.81827 -11.45590 -11.15306 -10.90445 -10.82571 -10.58649 -10.48577 -10.40917 -9.52403 -9.39422 -8.76663 -8.62293 -8.43726 -7.28898 -7.09790 -6.34545 -4.41447 1.12259 1.97063 2.23623 2.35579 2.98674 3.15206 3.23803 3.26916 3.42749 3.67630 4.21479 4.50353 4.59264 4.68881 4.72337 4.83212 4.94057 5.16597 5.30283 5.50197 5.52967 5.61175 5.78588 5.80247 5.86047 5.96330 6.11581 6.21256 6.31141 6.44293 6.84461 7.17083 7.33972 7.62888 7.95078 8.05549 8.63705 9.26920 10.75050 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.022130 B = 0.002902 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.969603 B = 9646.168425 C =10671.169143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.491 4.491 2 S 1.246 4.754 3 O -0.852 6.852 4 C -0.443 4.443 5 C -0.115 4.115 6 C 0.136 3.864 7 N -0.697 5.697 8 C 0.598 3.402 9 S -0.705 6.705 10 N -0.595 5.595 11 C 0.080 3.920 12 C 0.041 3.959 13 C -0.520 4.520 14 H 0.067 0.933 15 C 0.070 3.930 16 N -0.884 5.884 17 Si 0.899 3.101 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.270 1.270 21 C 0.115 3.885 22 H 0.079 0.921 23 H 0.105 0.895 24 H 0.113 0.887 25 H 0.124 0.876 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.396 0.604 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.266 0.734 36 H 0.077 0.923 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.093 2.717 9.445 18.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 1.444 4.556 3 O -0.847 6.847 4 C -0.580 4.580 5 C -0.154 4.154 6 C 0.011 3.989 7 N -0.330 5.330 8 C 0.238 3.762 9 S -0.579 6.579 10 N -0.302 5.302 11 C -0.045 4.045 12 C 0.022 3.978 13 C -0.558 4.558 14 H 0.085 0.915 15 C -0.135 4.135 16 N -0.520 5.520 17 Si 0.726 3.274 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.195 1.195 21 C -0.006 4.006 22 H 0.099 0.901 23 H 0.123 0.877 24 H 0.132 0.868 25 H 0.142 0.858 26 H 0.109 0.891 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.233 0.767 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.280 2.666 9.562 19.068 hybrid contribution 0.658 1.970 -0.917 2.270 sum -15.622 4.636 8.645 18.447 Atomic orbital electron populations 1.27648 1.21797 1.08136 1.07260 1.70562 0.86371 0.99027 0.99619 1.93148 1.73370 1.36775 1.81440 1.27578 1.01425 1.10816 1.18226 1.21386 0.93485 1.02263 0.98287 1.21556 0.77772 1.02706 0.96838 1.44775 1.08650 1.60576 1.18950 1.21486 0.84546 0.82417 0.87771 1.93160 1.57199 1.68700 1.38802 1.49363 1.00513 1.54523 1.25776 1.24205 0.81108 1.02701 0.96502 1.20388 0.92447 0.94773 0.90236 1.20852 0.90450 1.44752 0.99703 0.91470 1.25044 0.99533 0.94019 0.94864 1.69935 1.33579 1.43852 1.04679 0.86468 0.83533 0.78457 0.78907 1.20446 1.20992 1.19498 1.23687 0.84371 0.98905 0.93656 0.90126 0.87652 0.86803 0.85811 0.89138 0.90813 0.89873 0.89604 0.90198 0.76749 0.89588 0.91667 0.90808 0.92408 0.90482 0.89569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -2.24 10.74 101.05 1.09 -1.16 16 2 S 1.25 7.06 13.80 -107.50 -1.48 5.58 16 3 O -0.85 -11.30 18.14 -35.23 -0.64 -11.94 16 4 C -0.44 -2.80 5.92 37.16 0.22 -2.58 16 5 C -0.12 -0.97 5.34 -26.73 -0.14 -1.11 16 6 C 0.14 1.62 5.13 -4.04 -0.02 1.60 16 7 N -0.70 -10.01 5.56 -62.03 -0.34 -10.36 16 8 C 0.60 11.13 8.11 -86.92 -0.71 10.43 16 9 S -0.71 -15.35 29.11 -107.50 -3.13 -18.48 16 10 N -0.60 -11.28 3.69 -187.09 -0.69 -11.97 16 11 C 0.08 1.52 7.87 -8.37 -0.07 1.45 16 12 C 0.04 0.90 3.79 -91.12 -0.35 0.55 16 13 C -0.52 -12.45 8.83 -34.44 -0.30 -12.75 16 14 H 0.07 1.58 7.81 -52.48 -0.41 1.17 16 15 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 16 N -0.88 -22.83 13.26 55.43 0.74 -22.10 16 17 Si 0.90 19.26 29.54 -169.99 -5.02 14.24 16 18 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 C 0.12 2.27 7.91 -8.50 -0.07 2.20 16 22 H 0.08 0.50 8.14 -51.92 -0.42 0.07 16 23 H 0.10 0.45 8.14 -51.92 -0.42 0.03 16 24 H 0.11 0.23 8.14 -51.92 -0.42 -0.19 16 25 H 0.12 0.46 8.14 -51.92 -0.42 0.04 16 26 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 1.05 7.99 -51.93 -0.41 0.64 16 30 H 0.08 1.08 7.99 -51.93 -0.42 0.66 16 31 H 0.40 4.97 8.19 -40.82 -0.33 4.64 16 32 H 0.09 1.62 8.10 -51.93 -0.42 1.20 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.77 8.11 -51.93 -0.42 1.35 16 35 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 36 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.09 1.64 8.10 -51.93 -0.42 1.22 16 LS Contribution 341.40 15.07 5.14 5.14 Total: -1.00 -34.99 341.40 -11.65 -46.63 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.78 Total: 3.00 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -0.44 Total: 0.26 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -0.30 Total: -44.42 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -0.64 Total: -11.94 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -4.61 Total: -12.91 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.99 -11.65 -46.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246354402.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.210 kcal (2) G-P(sol) polarization free energy of solvation -34.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds