Wall clock time and date at job start Tue Mar 31 2020 05:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42095 * 109.46794 * 2 1 4 4 C 1.81399 * 103.00117 * 243.61166 * 2 1 3 5 5 C 1.52997 * 109.47146 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.46901 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.46824 * 179.97438 * 6 5 4 8 8 C 1.34779 * 119.99901 * 179.97438 * 7 6 5 9 9 S 1.71197 * 120.00170 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99827 * 180.02562 * 8 7 6 11 11 C 1.47068 * 136.05938 * 359.63275 * 10 8 7 12 12 C 1.53762 * 87.88403 * 152.96404 * 11 10 8 13 13 C 1.50696 * 114.26255 * 139.79808 * 12 11 10 14 14 H 1.08004 * 119.99791 * 266.46845 * 13 12 11 15 15 C 1.37876 * 120.00841 * 86.47162 * 13 12 11 16 16 N 1.31518 * 119.99639 * 359.97438 * 15 13 12 17 17 Si 1.86791 * 120.00590 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47518 * 89.99987 * 17 15 13 19 19 H 1.48500 * 109.47377 * 209.99940 * 17 15 13 20 20 H 1.48498 * 109.47232 * 329.99956 * 17 15 13 21 21 C 1.47067 * 136.05563 * 180.02562 * 10 8 7 22 22 H 1.09002 * 109.47124 * 56.38663 * 1 2 3 23 23 H 1.09001 * 109.46975 * 296.38784 * 1 2 3 24 24 H 1.09004 * 109.47147 * 176.38748 * 1 2 3 25 25 H 1.08998 * 109.46898 * 300.00463 * 4 2 1 26 26 H 1.08997 * 109.46949 * 60.00084 * 4 2 1 27 27 H 1.09002 * 109.47190 * 300.00308 * 5 4 2 28 28 H 1.08997 * 109.47148 * 60.00182 * 5 4 2 29 29 H 1.08994 * 109.47506 * 299.99839 * 6 5 4 30 30 H 1.08997 * 109.47120 * 60.00105 * 6 5 4 31 31 H 0.97001 * 120.00177 * 0.02562 * 7 6 5 32 32 H 1.08999 * 113.46365 * 267.69353 * 11 10 8 33 33 H 1.08995 * 113.46569 * 38.13566 * 11 10 8 34 34 H 1.09004 * 114.39289 * 272.67305 * 12 11 10 35 35 H 0.96996 * 120.00568 * 180.02562 * 16 15 13 36 36 H 1.09005 * 113.47032 * 321.86947 * 21 10 8 37 37 H 1.09000 * 113.46747 * 92.24777 * 21 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2221 -0.7856 -1.5833 5 6 3.7424 -0.8628 -1.7375 6 6 4.0865 -1.5248 -3.0732 7 7 5.5422 -1.5981 -3.2211 8 6 6.0803 -2.1474 -4.3280 9 16 5.0627 -2.7587 -5.5616 10 7 7.4195 -2.2153 -4.4638 11 6 8.5867 -1.8124 -3.6650 12 6 9.3745 -2.9402 -4.3517 13 6 10.7899 -2.5737 -4.7164 14 1 11.0121 -2.1924 -5.7021 15 6 11.8015 -2.7251 -3.7918 16 7 11.5309 -3.1889 -2.5912 17 14 13.5561 -2.2714 -4.2441 18 1 13.8008 -0.8455 -3.9092 19 1 14.5008 -3.1277 -3.4829 20 1 13.7618 -2.4802 -5.6999 21 6 8.3566 -2.7188 -5.4792 22 1 -0.3633 0.5689 -0.8558 23 1 -0.3633 0.4567 0.9206 24 1 -0.3634 -1.0257 -0.0648 25 1 1.8031 -1.7915 -1.6084 26 1 1.8032 -0.1970 -2.3995 27 1 4.1617 0.1430 -1.7121 28 1 4.1609 -1.4516 -0.9213 29 1 3.6672 -2.5305 -3.0990 30 1 3.6680 -0.9356 -3.8892 31 1 6.1188 -1.2521 -2.5220 32 1 8.9553 -0.8156 -3.9073 33 1 8.4529 -1.9641 -2.5940 34 1 9.2935 -3.9098 -3.8602 35 1 12.2424 -3.2951 -1.9405 36 1 8.0269 -3.6429 -5.9542 37 1 8.6639 -1.9611 -6.2000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246354402.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:09 Heat of formation + Delta-G solvation = -18.505675 kcal Electronic energy + Delta-G solvation = -18105.818601 eV Core-core repulsion = 15136.109470 eV Total energy + Delta-G solvation = -2969.709132 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.14608 -38.63619 -36.81489 -35.21004 -34.33333 -31.41408 -29.76359 -27.99587 -27.22574 -26.30992 -23.82395 -22.92230 -21.06437 -19.08501 -18.64483 -18.45806 -18.10202 -16.98522 -16.63483 -16.55396 -16.06399 -15.71675 -15.55364 -15.17009 -14.84014 -14.43686 -14.15319 -13.72894 -13.65469 -13.41572 -13.29654 -13.01982 -12.87029 -12.74387 -12.54097 -12.52187 -12.28022 -12.15225 -11.77141 -11.26364 -11.16836 -11.13825 -10.60438 -9.83214 -9.19063 -8.98150 -8.82151 -8.21611 -6.32611 0.45435 0.61276 0.82258 1.46587 1.49826 1.54717 1.59680 1.78511 2.28050 2.44460 2.89825 3.09232 3.81981 3.86317 3.92683 4.05163 4.19241 4.30089 4.33434 4.42403 4.48565 4.54212 4.59013 4.62540 4.72644 4.81514 4.87221 4.98499 5.13376 5.17630 5.52575 5.53914 5.76063 5.84895 6.13908 6.55699 6.76541 7.38117 8.88091 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.022130 B = 0.002902 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.969603 B = 9646.168425 C =10671.169143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.488 4.488 2 S 1.299 4.701 3 O -0.932 6.932 4 C -0.443 4.443 5 C -0.111 4.111 6 C 0.135 3.865 7 N -0.676 5.676 8 C 0.607 3.393 9 S -0.765 6.765 10 N -0.596 5.596 11 C 0.097 3.903 12 C 0.032 3.968 13 C -0.528 4.528 14 H 0.069 0.931 15 C 0.026 3.974 16 N -0.914 5.914 17 Si 0.957 3.043 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.268 1.268 21 C 0.124 3.876 22 H 0.065 0.935 23 H 0.111 0.889 24 H 0.148 0.852 25 H 0.158 0.842 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.113 0.887 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.410 0.590 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.047 0.953 35 H 0.266 0.734 36 H 0.071 0.929 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.747 2.767 10.448 19.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.647 4.647 2 S 1.500 4.500 3 O -0.927 6.927 4 C -0.580 4.580 5 C -0.150 4.150 6 C 0.011 3.989 7 N -0.307 5.307 8 C 0.244 3.756 9 S -0.639 6.639 10 N -0.303 5.303 11 C -0.027 4.027 12 C 0.012 3.988 13 C -0.566 4.566 14 H 0.087 0.913 15 C -0.175 4.175 16 N -0.552 5.552 17 Si 0.782 3.218 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.192 1.192 21 C 0.002 3.998 22 H 0.084 0.916 23 H 0.130 0.870 24 H 0.166 0.834 25 H 0.176 0.824 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.131 0.869 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.248 0.752 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.944 2.745 10.591 20.170 hybrid contribution 0.737 1.901 -1.214 2.373 sum -16.207 4.646 9.377 19.293 Atomic orbital electron populations 1.27625 1.19817 1.10272 1.06971 1.69691 0.86469 0.95863 0.97976 1.93015 1.76169 1.40573 1.82990 1.27611 1.00044 1.12605 1.17773 1.21391 0.95072 1.01483 0.97073 1.21738 0.75919 1.02893 0.98359 1.44912 1.10033 1.58167 1.17567 1.21165 0.83782 0.82470 0.88201 1.93271 1.58164 1.71130 1.41306 1.49189 1.00627 1.54889 1.25592 1.23949 0.80260 1.01847 0.96676 1.20220 0.92426 0.94475 0.91682 1.21138 0.91582 1.44183 0.99693 0.91305 1.25702 1.02789 0.94177 0.94851 1.70023 1.34457 1.45213 1.05498 0.85568 0.79540 0.78128 0.78533 1.19981 1.21302 1.19203 1.23535 0.83927 0.99049 0.93317 0.91585 0.87010 0.83363 0.82413 0.90598 0.92294 0.86897 0.89387 0.91885 0.75187 0.88825 0.90819 0.93465 0.92482 0.91055 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -3.20 10.74 113.37 1.22 -1.98 16 2 S 1.30 12.45 13.80 -56.49 -0.78 11.67 16 3 O -0.93 -24.64 18.14 -148.98 -2.70 -27.35 16 4 C -0.44 -4.58 5.92 71.98 0.43 -4.15 16 5 C -0.11 -1.63 5.34 30.59 0.16 -1.47 16 6 C 0.14 3.00 5.13 86.38 0.44 3.44 16 7 N -0.68 -18.27 5.56 -350.18 -1.95 -20.21 16 8 C 0.61 21.95 8.11 179.05 1.45 23.40 16 9 S -0.76 -33.14 29.11 -56.49 -1.64 -34.78 16 10 N -0.60 -21.97 3.69 -745.84 -2.75 -24.72 16 11 C 0.10 3.59 7.87 83.27 0.66 4.24 16 12 C 0.03 1.37 3.79 -11.11 -0.04 1.33 16 13 C -0.53 -25.01 8.83 25.60 0.23 -24.78 16 14 H 0.07 3.18 7.81 -2.91 -0.02 3.15 16 15 C 0.03 1.26 5.46 84.65 0.46 1.73 16 16 N -0.91 -47.04 13.26 21.45 0.28 -46.76 16 17 Si 0.96 38.98 29.54 68.60 2.03 41.00 16 18 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 19 H -0.29 -11.75 7.11 99.48 0.71 -11.05 16 20 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 21 C 0.12 4.80 7.91 83.18 0.66 5.46 16 22 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 23 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.15 -0.02 8.14 -2.39 -0.02 -0.04 16 25 H 0.16 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 1.99 7.99 -2.39 -0.02 1.97 16 30 H 0.06 1.66 7.99 -2.39 -0.02 1.64 16 31 H 0.41 9.32 8.19 -92.71 -0.76 8.56 16 32 H 0.09 3.35 8.10 -2.39 -0.02 3.33 16 33 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.05 2.30 8.11 -2.38 -0.02 2.28 16 35 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 36 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 37 H 0.10 3.53 8.10 -2.39 -0.02 3.51 16 Total: -1.00 -76.47 341.40 -1.55 -78.03 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.30 Total: 15.90 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 5.66 Total: 7.22 kcal Atomic # 7 Polarization: -87.28 SS G_CDS: -4.41 Total: -91.69 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -2.70 Total: -27.35 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.00 kcal Atomic # 16 Polarization: -20.69 SS G_CDS: -2.42 Total: -23.11 kcal Total: -76.47 -1.55 -78.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246354402.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.520 kcal (2) G-P(sol) polarization free energy of solvation -76.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds