Wall clock time and date at job start Tue Mar 31 2020 05:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42100 * 109.47043 * 2 1 4 4 C 1.81400 * 103.00225 * 116.39181 * 2 1 3 5 5 C 1.52992 * 109.47583 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47482 * 179.97438 * 5 4 2 7 7 N 1.46505 * 109.47212 * 179.97438 * 6 5 4 8 8 C 1.34771 * 119.99622 * 179.97438 * 7 6 5 9 9 S 1.71202 * 120.00438 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99489 * 180.02562 * 8 7 6 11 11 C 1.47059 * 136.05854 * 359.63146 * 10 8 7 12 12 C 1.53761 * 87.88959 * 152.96534 * 11 10 8 13 13 C 1.50699 * 114.26942 * 139.79092 * 12 11 10 14 14 H 1.07996 * 119.99936 * 266.47748 * 13 12 11 15 15 C 1.37880 * 119.99759 * 86.47544 * 13 12 11 16 16 N 1.31519 * 119.99951 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 120.00157 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.46827 * 90.00132 * 17 15 13 19 19 H 1.48493 * 109.47250 * 209.99812 * 17 15 13 20 20 H 1.48496 * 109.46921 * 330.00309 * 17 15 13 21 21 C 1.47071 * 136.05477 * 180.02562 * 10 8 7 22 22 H 1.09001 * 109.46880 * 303.61328 * 1 2 3 23 23 H 1.09002 * 109.46829 * 63.60528 * 1 2 3 24 24 H 1.08997 * 109.47110 * 183.61079 * 1 2 3 25 25 H 1.09002 * 109.47172 * 59.99682 * 4 2 1 26 26 H 1.09001 * 109.46713 * 299.99934 * 4 2 1 27 27 H 1.09002 * 109.47103 * 59.99669 * 5 4 2 28 28 H 1.08998 * 109.46862 * 300.00481 * 5 4 2 29 29 H 1.09002 * 109.47153 * 59.99783 * 6 5 4 30 30 H 1.09001 * 109.46832 * 299.99974 * 6 5 4 31 31 H 0.96996 * 119.99606 * 0.02562 * 7 6 5 32 32 H 1.09002 * 113.46756 * 267.69069 * 11 10 8 33 33 H 1.08996 * 113.47105 * 38.13848 * 11 10 8 34 34 H 1.08996 * 114.39289 * 272.67740 * 12 11 10 35 35 H 0.96992 * 120.00100 * 180.02562 * 16 15 13 36 36 H 1.09003 * 113.46475 * 321.85812 * 21 10 8 37 37 H 1.09000 * 113.46986 * 92.24563 * 21 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2221 -0.7857 1.5833 5 6 3.7423 -0.8629 1.7375 6 6 4.0865 -1.5250 3.0732 7 7 5.5422 -1.5995 3.2205 8 6 6.0802 -2.1480 4.3278 9 16 5.0625 -2.7584 5.5619 10 7 7.4194 -2.2161 4.4635 11 6 8.5865 -1.8256 3.6586 12 6 9.3751 -1.6894 4.9715 13 6 10.7901 -2.2030 4.9002 14 1 11.0114 -3.2184 5.1939 15 6 11.8021 -1.3764 4.4601 16 7 13.0371 -1.8244 4.3984 17 14 11.4194 0.3802 3.9528 18 1 11.5401 1.2736 5.1329 19 1 12.3779 0.8127 2.9045 20 1 10.0358 0.4506 3.4181 21 6 8.3566 -2.7199 5.4789 22 1 -0.3633 0.5689 0.8559 23 1 -0.3633 0.4569 -0.9206 24 1 -0.3633 -1.0256 0.0647 25 1 1.8032 -1.7916 1.6084 26 1 1.8032 -0.1971 2.3995 27 1 4.1616 0.1429 1.7122 28 1 4.1608 -1.4516 0.9212 29 1 3.6671 -2.5308 3.0989 30 1 3.6680 -0.9358 3.8892 31 1 6.1187 -1.2533 2.5215 32 1 8.9542 -2.6225 3.0122 33 1 8.4534 -0.8814 3.1306 34 1 9.2953 -0.7111 5.4452 35 1 13.7491 -1.2429 4.0891 36 1 8.0274 -2.5375 6.5019 37 1 8.6629 -3.7526 5.3125 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246354404.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:12 Heat of formation + Delta-G solvation = -16.434381 kcal Electronic energy + Delta-G solvation = -18202.536063 eV Core-core repulsion = 15232.916750 eV Total energy + Delta-G solvation = -2969.619313 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.26528 -38.68394 -36.81243 -35.20599 -34.39649 -31.71337 -29.77375 -28.23074 -27.30714 -26.33831 -23.72819 -22.83612 -20.99572 -19.36167 -18.77888 -18.59869 -18.13866 -17.02891 -16.67699 -16.56194 -15.90145 -15.71423 -15.43875 -15.23929 -15.02107 -14.72990 -14.37865 -13.81809 -13.72316 -13.60422 -13.28655 -13.03802 -12.85274 -12.71465 -12.57282 -12.38769 -12.27494 -11.90094 -11.78466 -11.54436 -11.29840 -11.15144 -10.74110 -9.87734 -9.19292 -9.00720 -8.82682 -8.30992 -6.39847 0.42195 0.61170 0.79867 1.37859 1.42223 1.49620 1.50421 1.78477 2.25407 2.34215 2.90100 2.99021 3.78609 3.84169 3.87700 3.94720 4.05426 4.27309 4.30010 4.34260 4.43017 4.48386 4.53927 4.59671 4.68234 4.71541 4.84747 4.98924 5.13120 5.17469 5.26717 5.49671 5.51402 5.81036 6.23131 6.50894 6.69345 7.27732 8.84000 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.019683 B = 0.003252 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.191021 B = 8607.772797 C = 9778.962168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.489 4.489 2 S 1.301 4.699 3 O -0.932 6.932 4 C -0.444 4.444 5 C -0.111 4.111 6 C 0.134 3.866 7 N -0.674 5.674 8 C 0.610 3.390 9 S -0.761 6.761 10 N -0.598 5.598 11 C 0.083 3.917 12 C -0.009 4.009 13 C -0.512 4.512 14 H 0.047 0.953 15 C 0.025 3.975 16 N -0.938 5.938 17 Si 0.938 3.062 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.231 1.231 21 C 0.134 3.866 22 H 0.064 0.936 23 H 0.111 0.889 24 H 0.148 0.852 25 H 0.158 0.842 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.116 0.884 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.411 0.589 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.269 0.731 36 H 0.076 0.924 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.096 1.072 -15.032 26.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 1.502 4.498 3 O -0.927 6.927 4 C -0.581 4.581 5 C -0.150 4.150 6 C 0.010 3.990 7 N -0.305 5.305 8 C 0.247 3.753 9 S -0.635 6.635 10 N -0.305 5.305 11 C -0.042 4.042 12 C -0.029 4.029 13 C -0.550 4.550 14 H 0.066 0.934 15 C -0.175 4.175 16 N -0.577 5.577 17 Si 0.762 3.238 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.154 1.154 21 C 0.012 3.988 22 H 0.083 0.917 23 H 0.129 0.871 24 H 0.166 0.834 25 H 0.176 0.824 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.134 0.866 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.250 0.750 32 H 0.124 0.876 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -22.201 1.133 -15.057 26.849 hybrid contribution 0.260 2.298 1.142 2.579 sum -21.941 3.430 -13.915 26.207 Atomic orbital electron populations 1.27631 1.19963 1.10245 1.06919 1.69659 0.86345 0.95865 0.97957 1.93019 1.76112 1.40608 1.83003 1.27619 1.00186 1.12598 1.17723 1.21397 0.94973 1.01512 0.97137 1.21754 0.75902 1.03001 0.98330 1.44910 1.10066 1.58279 1.17222 1.21124 0.83578 0.82331 0.88246 1.93379 1.58076 1.70717 1.41338 1.49053 1.00623 1.55639 1.25195 1.24282 0.80468 1.01287 0.98120 1.20671 0.92764 0.96225 0.93212 1.20814 0.90281 0.99400 1.44474 0.93446 1.25818 0.94345 1.02677 0.94616 1.70020 1.01400 1.38625 1.47607 0.85899 0.80043 0.79506 0.78356 1.20425 1.21407 1.15406 1.23297 0.83154 0.99923 0.92397 0.91669 0.87076 0.83369 0.82364 0.90752 0.92368 0.86587 0.89141 0.92063 0.75007 0.87624 0.89478 0.91460 0.92197 0.90543 0.88705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -2.68 10.74 113.37 1.22 -1.46 16 2 S 1.30 10.43 13.80 -56.49 -0.78 9.65 16 3 O -0.93 -23.32 18.14 -148.98 -2.70 -26.03 16 4 C -0.44 -3.78 5.92 71.98 0.43 -3.36 16 5 C -0.11 -1.36 5.34 30.59 0.16 -1.19 16 6 C 0.13 2.62 5.13 86.38 0.44 3.07 16 7 N -0.67 -15.87 5.56 -350.16 -1.95 -17.82 16 8 C 0.61 20.01 8.11 179.05 1.45 21.47 16 9 S -0.76 -31.16 29.11 -56.49 -1.64 -32.81 16 10 N -0.60 -19.79 3.69 -745.83 -2.75 -22.54 16 11 C 0.08 2.63 7.30 83.27 0.61 3.23 16 12 C -0.01 -0.34 2.97 -11.11 -0.03 -0.37 16 13 C -0.51 -25.00 9.38 25.60 0.24 -24.76 16 14 H 0.05 2.60 8.06 -2.91 -0.02 2.58 16 15 C 0.02 1.27 5.47 84.65 0.46 1.73 16 16 N -0.94 -53.03 13.96 21.45 0.30 -52.73 16 17 Si 0.94 38.20 27.15 68.60 1.86 40.06 16 18 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 19 H -0.29 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.23 -8.03 5.72 99.48 0.57 -7.46 16 21 C 0.13 4.88 7.91 83.18 0.66 5.54 16 22 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.11 0.57 8.14 -2.39 -0.02 0.56 16 24 H 0.15 -0.19 8.14 -2.39 -0.02 -0.21 16 25 H 0.16 0.26 8.14 -2.39 -0.02 0.24 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.09 1.78 7.99 -2.39 -0.02 1.76 16 30 H 0.06 1.49 7.99 -2.39 -0.02 1.47 16 31 H 0.41 7.60 8.19 -92.71 -0.76 6.84 16 32 H 0.11 3.25 8.10 -2.39 -0.02 3.23 16 33 H 0.09 2.39 7.15 -2.39 -0.02 2.38 16 34 H 0.07 2.63 7.03 -2.39 -0.02 2.61 16 35 H 0.27 14.30 8.31 -92.71 -0.77 13.52 16 36 H 0.08 2.84 8.14 -2.39 -0.02 2.83 16 37 H 0.09 3.43 8.10 -2.39 -0.02 3.41 16 Total: -1.00 -81.55 335.67 -1.86 -83.41 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.16 Total: 14.91 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 5.64 Total: 3.90 kcal Atomic # 7 Polarization: -88.69 SS G_CDS: -4.40 Total: -93.09 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -2.70 Total: -26.03 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 1.86 Total: 40.06 kcal Atomic # 16 Polarization: -20.74 SS G_CDS: -2.42 Total: -23.16 kcal Total: -81.55 -1.86 -83.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246354404.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.973 kcal (2) G-P(sol) polarization free energy of solvation -81.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds