Wall clock time and date at job start Tue Mar 31 2020 06:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00215 * 2 1 4 4 H 1.48493 * 109.47599 * 240.00407 * 3 2 1 5 5 H 1.48510 * 109.46911 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47134 * 119.99845 * 3 2 1 7 7 C 1.37885 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00215 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47048 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46814 * 179.97438 * 10 9 7 12 12 O 1.45203 * 109.47065 * 179.97438 * 11 10 9 13 13 C 1.34226 * 116.99976 * 179.97438 * 12 11 10 14 14 O 1.20825 * 120.00386 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99825 * 180.02562 * 13 12 11 16 16 C 1.52995 * 109.47208 * 180.02562 * 15 13 12 17 17 H 1.09001 * 110.00908 * 306.37906 * 16 15 13 18 18 C 1.53875 * 110.02925 * 185.00000 * 16 15 13 19 19 C 1.54166 * 108.59849 * 193.59345 * 18 16 15 20 20 S 1.82602 * 105.23560 * 27.88171 * 19 18 16 21 21 O 1.42103 * 109.36508 * 244.49246 * 20 19 18 22 22 O 1.42092 * 109.47815 * 111.31110 * 20 19 18 23 23 C 1.55047 * 110.02869 * 67.80452 * 16 15 13 24 24 H 0.96990 * 119.99992 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47111 * 59.99740 * 9 7 2 26 26 H 1.09002 * 109.46680 * 299.99902 * 9 7 2 27 27 H 1.08999 * 109.47143 * 59.99493 * 10 9 7 28 28 H 1.09002 * 109.47080 * 299.99387 * 10 9 7 29 29 H 1.08999 * 109.47376 * 60.00007 * 11 10 9 30 30 H 1.08992 * 109.47506 * 299.99401 * 11 10 9 31 31 H 1.09002 * 109.46972 * 59.99965 * 15 13 12 32 32 H 1.09003 * 109.46957 * 300.00504 * 15 13 12 33 33 H 1.09002 * 109.64606 * 313.38067 * 18 16 15 34 34 H 1.09006 * 109.64537 * 73.80834 * 18 16 15 35 35 H 1.08993 * 110.32269 * 146.74711 * 19 18 16 36 36 H 1.09000 * 110.31911 * 268.94499 * 19 18 16 37 37 H 1.08991 * 110.79809 * 279.99698 * 23 16 15 38 38 H 1.09000 * 110.78905 * 43.46238 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 8 2.4238 -6.0908 -0.0024 13 6 1.9108 -7.3311 -0.0023 14 8 0.7129 -7.4895 -0.0025 15 6 2.8288 -8.5263 -0.0021 16 6 1.9956 -9.8094 -0.0028 17 1 1.2825 -9.7915 0.8215 18 6 2.9163 -11.0358 0.1234 19 6 2.1027 -12.2991 -0.2214 20 16 0.8031 -11.7334 -1.3727 21 8 -0.4709 -11.9088 -0.7681 22 8 1.0518 -12.2656 -2.6665 23 6 1.2455 -9.9548 -1.3519 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5564 -0.8919 26 1 0.6241 -2.5575 0.8880 27 1 2.8714 -3.6047 0.8890 28 1 2.8726 -3.6040 -0.8910 29 1 0.8540 -5.0447 -0.8922 30 1 0.8534 -5.0451 0.8877 31 1 3.4575 -8.5013 0.8880 32 1 3.4578 -8.5014 -0.8920 33 1 3.7530 -10.9386 -0.5684 34 1 3.2915 -11.1089 1.1443 35 1 2.7395 -13.0388 -0.7065 36 1 1.6535 -12.7175 0.6792 37 1 0.3502 -9.3333 -1.3659 38 1 1.9011 -9.7096 -2.1874 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248600859.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:41 Heat of formation + Delta-G solvation = -181.378485 kcal Electronic energy + Delta-G solvation = -20542.012626 eV Core-core repulsion = 17090.195177 eV Total energy + Delta-G solvation = -3451.817449 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.50316 -37.80252 -37.32268 -36.37296 -36.19622 -34.04342 -31.93015 -31.46744 -28.96349 -27.06337 -25.19513 -23.32853 -21.63099 -20.56843 -20.25009 -19.19519 -17.72723 -17.31287 -16.85278 -16.54083 -16.43436 -15.93426 -15.84252 -15.09415 -14.62907 -14.50865 -14.17654 -13.96850 -13.21682 -12.99390 -12.59198 -12.49793 -12.41605 -12.31112 -12.28959 -12.17473 -11.90092 -11.84016 -11.40402 -11.08129 -10.98486 -10.72939 -10.69663 -10.65124 -10.45016 -10.39717 -9.77965 -9.54413 -9.21603 -8.41841 -6.06686 -4.10120 -0.31037 2.16722 2.22281 2.70690 3.23490 3.29935 3.34564 3.36796 3.60120 3.85884 4.04835 4.12136 4.35884 4.36545 4.40898 4.62538 4.89728 4.97005 5.05175 5.13638 5.16162 5.21603 5.29159 5.49818 5.51235 5.54162 5.57368 5.94908 6.43243 6.47835 6.77875 6.92801 7.55746 7.66600 7.81363 7.91187 8.31964 8.95908 9.54313 11.04737 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.045601 B = 0.002358 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.870097 B =11871.068825 C =12161.272613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.068 3.932 12 O -0.358 6.358 13 C 0.455 3.545 14 O -0.510 6.510 15 C -0.102 4.102 16 C -0.080 4.080 17 H 0.107 0.893 18 C -0.109 4.109 19 C -0.597 4.597 20 S 2.389 3.611 21 O -0.935 6.935 22 O -0.942 6.942 23 C -0.586 4.586 24 H 0.263 0.737 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.151 0.849 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.959 -25.121 0.432 26.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.147 4.147 11 C -0.005 4.005 12 O -0.275 6.275 13 C 0.297 3.703 14 O -0.399 6.399 15 C -0.140 4.140 16 C -0.100 4.100 17 H 0.126 0.874 18 C -0.148 4.148 19 C -0.726 4.726 20 S 2.573 3.427 21 O -0.932 6.932 22 O -0.939 6.939 23 C -0.716 4.716 24 H 0.072 0.928 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.169 0.831 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.705 -25.521 -0.059 26.387 hybrid contribution 0.860 1.446 0.424 1.735 sum 7.565 -24.075 0.365 25.239 Atomic orbital electron populations 1.69952 1.06104 1.26947 1.50334 1.25036 0.94886 0.99394 0.95144 0.86594 0.79525 0.82840 0.78665 1.20167 1.21240 1.20174 1.21128 0.93070 0.90683 1.51282 0.92483 1.19046 0.93825 0.90741 0.97681 1.21768 0.99941 0.91008 1.01948 1.23529 0.91179 0.83561 1.02222 1.86492 1.42774 1.15210 1.82979 1.23467 0.88654 0.85247 0.72883 1.90655 1.17005 1.86845 1.45362 1.21283 0.97480 0.88593 1.06670 1.21718 0.97410 0.94291 0.96566 0.87437 1.21958 0.98283 0.89090 1.05436 1.30481 1.17470 1.07262 1.17361 1.09043 0.77325 0.79705 0.76646 1.93637 1.36784 1.84690 1.78102 1.93612 1.86324 1.77057 1.36905 1.30821 1.12126 1.24029 1.04645 0.92784 0.96247 0.96245 0.92147 0.92150 0.91466 0.91430 0.86801 0.87007 0.89181 0.88477 0.84297 0.84418 0.83077 0.84358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.61 5.46 -17.81 -0.10 1.52 16 3 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.19 5.53 -26.73 -0.15 -2.34 16 11 C 0.07 1.19 5.47 37.16 0.20 1.39 16 12 O -0.36 -5.37 10.22 -39.25 -0.40 -5.77 16 13 C 0.45 5.72 7.74 36.01 0.28 6.00 16 14 O -0.51 -7.83 14.19 -18.75 -0.27 -8.09 16 15 C -0.10 -0.69 5.29 -27.88 -0.15 -0.84 16 16 C -0.08 -0.48 2.21 -89.08 -0.20 -0.68 16 17 H 0.11 0.71 7.92 -51.93 -0.41 0.30 16 18 C -0.11 -0.34 5.76 -25.67 -0.15 -0.49 16 19 C -0.60 -2.20 7.24 37.77 0.27 -1.93 16 20 S 2.39 18.08 6.10 -107.50 -0.66 17.43 16 21 O -0.94 -11.10 18.14 -57.73 -1.05 -12.15 16 22 O -0.94 -10.36 18.15 -57.73 -1.05 -11.40 16 23 C -0.59 -4.14 6.10 38.24 0.23 -3.91 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 30 H 0.07 1.20 8.13 -51.93 -0.42 0.77 16 31 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.11 0.53 8.09 -51.93 -0.42 0.11 16 33 H 0.09 0.14 8.10 -51.93 -0.42 -0.28 16 34 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.14 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.14 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.15 1.38 6.93 -51.93 -0.36 1.02 16 38 H 0.14 0.71 8.06 -51.93 -0.42 0.29 16 LS Contribution 332.38 15.07 5.01 5.01 Total: -1.00 -37.43 332.38 -8.69 -46.12 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: -5.80 Total: -5.89 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -0.20 Total: -15.66 kcal Atomic # 7 Polarization: -26.64 SS G_CDS: 0.74 Total: -25.90 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -2.76 Total: -37.42 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 18.08 SS G_CDS: -0.66 Total: 17.43 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -37.43 -8.69 -46.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248600859.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.254 kcal (2) G-P(sol) polarization free energy of solvation -37.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds