Wall clock time and date at job start Tue Mar 31 2020 06:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00215 * 2 1 4 4 H 1.48493 * 109.47599 * 240.00407 * 3 2 1 5 5 H 1.48510 * 109.46911 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47134 * 119.99845 * 3 2 1 7 7 C 1.37885 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00215 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47048 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46814 * 179.97438 * 10 9 7 12 12 O 1.45203 * 109.47065 * 179.97438 * 11 10 9 13 13 C 1.34226 * 116.99976 * 179.97438 * 12 11 10 14 14 O 1.20825 * 120.00386 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99825 * 180.02562 * 13 12 11 16 16 C 1.52995 * 109.47208 * 180.02562 * 15 13 12 17 17 H 1.09001 * 110.00908 * 306.37906 * 16 15 13 18 18 C 1.53875 * 110.02925 * 185.00000 * 16 15 13 19 19 C 1.54166 * 108.59849 * 193.59345 * 18 16 15 20 20 S 1.82602 * 105.23560 * 27.88171 * 19 18 16 21 21 O 1.42103 * 109.36508 * 244.49246 * 20 19 18 22 22 O 1.42092 * 109.47815 * 111.31110 * 20 19 18 23 23 C 1.55047 * 110.02869 * 67.80452 * 16 15 13 24 24 H 0.96990 * 119.99992 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47111 * 59.99740 * 9 7 2 26 26 H 1.09002 * 109.46680 * 299.99902 * 9 7 2 27 27 H 1.08999 * 109.47143 * 59.99493 * 10 9 7 28 28 H 1.09002 * 109.47080 * 299.99387 * 10 9 7 29 29 H 1.08999 * 109.47376 * 60.00007 * 11 10 9 30 30 H 1.08992 * 109.47506 * 299.99401 * 11 10 9 31 31 H 1.09002 * 109.46972 * 59.99965 * 15 13 12 32 32 H 1.09003 * 109.46957 * 300.00504 * 15 13 12 33 33 H 1.09002 * 109.64606 * 313.38067 * 18 16 15 34 34 H 1.09006 * 109.64537 * 73.80834 * 18 16 15 35 35 H 1.08993 * 110.32269 * 146.74711 * 19 18 16 36 36 H 1.09000 * 110.31911 * 268.94499 * 19 18 16 37 37 H 1.08991 * 110.79809 * 279.99698 * 23 16 15 38 38 H 1.09000 * 110.78905 * 43.46238 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 8 2.4238 -6.0908 -0.0024 13 6 1.9108 -7.3311 -0.0023 14 8 0.7129 -7.4895 -0.0025 15 6 2.8288 -8.5263 -0.0021 16 6 1.9956 -9.8094 -0.0028 17 1 1.2825 -9.7915 0.8215 18 6 2.9163 -11.0358 0.1234 19 6 2.1027 -12.2991 -0.2214 20 16 0.8031 -11.7334 -1.3727 21 8 -0.4709 -11.9088 -0.7681 22 8 1.0518 -12.2656 -2.6665 23 6 1.2455 -9.9548 -1.3519 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5564 -0.8919 26 1 0.6241 -2.5575 0.8880 27 1 2.8714 -3.6047 0.8890 28 1 2.8726 -3.6040 -0.8910 29 1 0.8540 -5.0447 -0.8922 30 1 0.8534 -5.0451 0.8877 31 1 3.4575 -8.5013 0.8880 32 1 3.4578 -8.5014 -0.8920 33 1 3.7530 -10.9386 -0.5684 34 1 3.2915 -11.1089 1.1443 35 1 2.7395 -13.0388 -0.7065 36 1 1.6535 -12.7175 0.6792 37 1 0.3502 -9.3333 -1.3659 38 1 1.9011 -9.7096 -2.1874 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248600859.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:37 Heat of formation + Delta-G solvation = -208.467868 kcal Electronic energy + Delta-G solvation = -20543.187310 eV Core-core repulsion = 17090.195177 eV Total energy + Delta-G solvation = -3452.992133 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.55389 -38.53501 -38.05986 -37.30817 -36.98219 -35.93015 -33.71260 -32.10518 -29.74123 -28.69937 -25.92761 -24.90863 -22.40386 -22.16519 -21.12982 -19.82183 -18.77815 -18.45601 -18.00781 -17.64912 -17.36341 -16.95220 -16.64406 -16.49878 -15.84100 -15.41698 -14.99944 -14.78029 -14.31112 -14.08147 -13.96623 -13.66181 -13.42603 -13.23209 -13.09756 -12.96905 -12.81549 -12.78661 -12.53061 -12.46088 -12.37281 -12.05108 -11.75187 -11.72171 -11.64980 -11.39749 -11.36965 -11.19999 -11.12647 -10.57637 -8.22540 -6.34448 -0.86791 1.23271 1.41276 1.44572 1.52418 1.66152 1.70910 2.41064 2.70596 3.06258 3.11372 3.37764 3.52852 3.63183 3.88047 3.99814 4.01958 4.07090 4.13703 4.27285 4.41836 4.52701 4.65184 4.73802 4.79621 4.84151 4.90951 4.92914 5.07859 5.14292 5.22330 5.44748 5.59469 5.62787 5.79297 6.18101 6.75420 6.82231 7.35355 8.89544 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.045601 B = 0.002358 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.870097 B =11871.068825 C =12161.272613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.025 3.975 10 C -0.093 4.093 11 C 0.078 3.922 12 O -0.359 6.359 13 C 0.446 3.554 14 O -0.545 6.545 15 C -0.093 4.093 16 C -0.084 4.084 17 H 0.096 0.904 18 C -0.105 4.105 19 C -0.562 4.562 20 S 2.379 3.621 21 O -0.992 6.992 22 O -0.985 6.985 23 C -0.587 4.587 24 H 0.264 0.736 25 H -0.006 1.006 26 H -0.005 1.005 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.166 0.834 36 H 0.153 0.847 37 H 0.122 0.878 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.682 -26.014 1.237 28.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.085 0.915 9 C -0.012 4.012 10 C -0.131 4.131 11 C 0.004 3.996 12 O -0.275 6.275 13 C 0.292 3.708 14 O -0.435 6.435 15 C -0.131 4.131 16 C -0.104 4.104 17 H 0.114 0.886 18 C -0.143 4.143 19 C -0.695 4.695 20 S 2.570 3.430 21 O -0.990 6.990 22 O -0.982 6.982 23 C -0.718 4.718 24 H 0.073 0.927 25 H 0.013 0.987 26 H 0.013 0.987 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.167 0.833 32 H 0.160 0.840 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.183 0.817 36 H 0.171 0.829 37 H 0.140 0.860 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 10.408 -26.438 0.714 28.422 hybrid contribution -0.291 1.660 0.208 1.699 sum 10.117 -24.777 0.922 26.779 Atomic orbital electron populations 1.70097 1.07959 1.28024 1.51435 1.26037 0.95779 1.03620 0.94581 0.85432 0.78181 0.77681 0.79356 1.18976 1.21059 1.18917 1.21613 0.93795 0.91848 1.50925 0.91518 1.18938 0.94323 0.92686 0.95290 1.21442 0.98637 0.90416 1.02601 1.23057 0.90998 0.84003 1.01514 1.86483 1.41844 1.15712 1.83493 1.24815 0.89320 0.85436 0.71272 1.90662 1.19008 1.86976 1.46867 1.21543 0.96614 0.85219 1.09705 1.21836 0.97817 0.95670 0.95100 0.88595 1.22075 0.97803 0.86364 1.08020 1.30263 1.15057 1.08356 1.15870 1.09019 0.77656 0.79812 0.76545 1.93558 1.41125 1.85553 1.78730 1.93548 1.86919 1.77872 1.39860 1.30758 1.11689 1.22671 1.06661 0.92685 0.98732 0.98653 0.91331 0.91433 0.92336 0.92178 0.83335 0.83958 0.86314 0.85657 0.81653 0.82870 0.85964 0.82388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.88 13.29 21.45 0.28 -56.60 16 2 C 0.00 -0.14 5.46 84.66 0.46 0.33 16 3 Si 0.97 43.54 29.54 68.60 2.03 45.57 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 5 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.54 -30.45 9.11 25.60 0.23 -30.21 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.02 1.29 4.97 29.85 0.15 1.44 16 10 C -0.09 -3.74 5.53 30.59 0.17 -3.57 16 11 C 0.08 2.76 5.47 71.98 0.39 3.16 16 12 O -0.36 -10.28 10.22 -51.38 -0.53 -10.80 16 13 C 0.45 10.62 7.74 71.24 0.55 11.17 16 14 O -0.54 -16.98 14.19 21.97 0.31 -16.67 16 15 C -0.09 -0.90 5.29 29.85 0.16 -0.74 16 16 C -0.08 -0.77 2.21 -9.80 -0.02 -0.79 16 17 H 0.10 1.12 7.92 -2.39 -0.02 1.10 16 18 C -0.10 -0.10 5.76 31.28 0.18 0.08 16 19 C -0.56 -2.02 7.24 72.38 0.52 -1.49 16 20 S 2.38 35.98 6.10 -56.49 -0.34 35.63 16 21 O -0.99 -25.28 18.14 -127.47 -2.31 -27.59 16 22 O -0.98 -22.10 18.15 -127.47 -2.31 -24.42 16 23 C -0.59 -7.95 6.10 72.68 0.44 -7.50 16 24 H 0.26 15.13 8.31 -92.72 -0.77 14.36 16 25 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 26 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 27 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 28 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.06 2.15 8.13 -2.39 -0.02 2.13 16 30 H 0.06 2.19 8.13 -2.39 -0.02 2.17 16 31 H 0.15 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.14 0.61 8.09 -2.39 -0.02 0.59 16 33 H 0.12 -0.43 8.10 -2.39 -0.02 -0.45 16 34 H 0.13 -0.38 8.14 -2.38 -0.02 -0.40 16 35 H 0.17 -0.08 8.14 -2.39 -0.02 -0.10 16 36 H 0.15 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.12 2.44 6.93 -2.39 -0.02 2.42 16 38 H 0.16 1.39 8.06 -2.39 -0.02 1.37 16 Total: -1.00 -85.61 332.38 1.41 -84.20 By element: Atomic # 1 Polarization: -2.22 SS G_CDS: 1.04 Total: -1.18 kcal Atomic # 6 Polarization: -31.39 SS G_CDS: 3.24 Total: -28.14 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: 0.28 Total: -56.60 kcal Atomic # 8 Polarization: -74.64 SS G_CDS: -4.84 Total: -79.48 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: 35.98 SS G_CDS: -0.34 Total: 35.63 kcal Total: -85.61 1.41 -84.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248600859.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.270 kcal (2) G-P(sol) polarization free energy of solvation -85.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds