Wall clock time and date at job start Tue Mar 31 2020 06:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99989 * 2 1 4 4 H 1.48500 * 109.46827 * 269.99414 * 3 2 1 5 5 H 1.48496 * 109.46977 * 29.99917 * 3 2 1 6 6 H 1.48504 * 109.46766 * 149.99908 * 3 2 1 7 7 C 1.37875 * 119.99658 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00012 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00444 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47478 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47189 * 179.97438 * 10 9 7 12 12 O 1.45205 * 109.46903 * 179.97438 * 11 10 9 13 13 C 1.34228 * 116.99701 * 179.97438 * 12 11 10 14 14 O 1.20828 * 120.00333 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99774 * 179.97438 * 13 12 11 16 16 C 1.53004 * 109.46938 * 180.02562 * 15 13 12 17 17 H 1.09002 * 110.04972 * 306.40765 * 16 15 13 18 18 C 1.53878 * 110.02785 * 67.80910 * 16 15 13 19 19 C 1.54159 * 108.70185 * 166.47004 * 18 16 15 20 20 S 1.82920 * 105.08823 * 332.09231 * 19 18 16 21 21 O 1.42103 * 109.35097 * 115.52458 * 20 19 18 22 22 O 1.42104 * 109.35329 * 248.59000 * 20 19 18 23 23 C 1.55045 * 110.02594 * 185.00395 * 16 15 13 24 24 H 0.96999 * 119.99831 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.46918 * 59.99299 * 9 7 2 26 26 H 1.09000 * 109.46883 * 299.99972 * 9 7 2 27 27 H 1.09000 * 109.46961 * 59.99829 * 10 9 7 28 28 H 1.09002 * 109.47200 * 300.00599 * 10 9 7 29 29 H 1.09003 * 109.47084 * 60.00589 * 11 10 9 30 30 H 1.08990 * 109.47196 * 300.00289 * 11 10 9 31 31 H 1.08997 * 109.46877 * 60.00767 * 15 13 12 32 32 H 1.08994 * 109.47366 * 300.00515 * 15 13 12 33 33 H 1.09005 * 109.64521 * 46.61962 * 18 16 15 34 34 H 1.08996 * 109.64754 * 286.32351 * 18 16 15 35 35 H 1.09010 * 110.31795 * 213.18865 * 19 18 16 36 36 H 1.08996 * 110.32170 * 90.99780 * 19 18 16 37 37 H 1.08999 * 110.79230 * 80.00204 * 23 16 15 38 38 H 1.08997 * 110.78846 * 316.54216 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 8 2.4237 -6.0908 0.0006 13 6 1.9106 -7.3311 0.0016 14 8 0.7127 -7.4894 0.0024 15 6 2.8286 -8.5263 0.0004 16 6 1.9953 -9.8094 0.0013 17 1 1.2830 -9.7919 0.8262 18 6 1.2488 -9.9539 -1.3366 19 6 0.7021 -11.3912 -1.4449 20 16 1.8470 -12.4124 -0.4487 21 8 1.1465 -12.9593 0.6602 22 8 2.5866 -13.2671 -1.3100 23 6 2.9232 -11.0451 0.1272 24 1 -0.4850 0.8400 -0.0004 25 1 0.6245 -2.5570 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6044 0.8905 28 1 2.8719 -3.6044 -0.8894 29 1 0.8532 -5.0451 -0.8887 30 1 0.8538 -5.0445 0.8913 31 1 3.4586 -8.5013 0.8895 32 1 3.4562 -8.5016 -0.8904 33 1 1.9342 -9.7593 -2.1615 34 1 0.4227 -9.2438 -1.3738 35 1 0.7074 -11.7209 -2.4840 36 1 -0.3065 -11.4445 -1.0353 37 1 3.2237 -11.1994 1.1635 38 1 3.7954 -10.9413 -0.5182 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248600860.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:46 Heat of formation + Delta-G solvation = -181.480301 kcal Electronic energy + Delta-G solvation = -20470.564518 eV Core-core repulsion = 17018.742654 eV Total energy + Delta-G solvation = -3451.821864 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 3.01 seconds Orbital eigenvalues (eV) -40.55188 -37.80058 -37.39321 -36.41785 -36.17769 -34.06245 -31.94163 -31.46080 -29.15067 -27.05796 -24.91019 -23.38147 -21.75825 -20.57859 -20.26276 -19.24513 -17.78961 -17.25999 -17.00213 -16.57305 -16.43070 -15.99234 -15.77669 -14.89551 -14.70536 -14.51910 -14.27160 -14.03239 -13.24752 -13.08892 -12.60626 -12.53092 -12.44073 -12.34648 -12.24006 -12.15565 -11.91553 -11.79665 -11.35639 -11.08892 -11.01603 -10.87332 -10.71098 -10.66944 -10.47674 -10.34196 -9.79858 -9.55987 -9.21743 -8.43539 -6.08281 -4.11563 -0.37145 2.08211 2.17808 2.71749 3.18145 3.27576 3.34010 3.37252 3.57047 3.81606 4.08600 4.13300 4.35405 4.39360 4.42333 4.62272 4.81958 4.91841 5.04069 5.17799 5.20598 5.27810 5.30273 5.48826 5.52243 5.57701 5.66812 5.92845 6.41180 6.46204 6.75686 6.91222 7.54309 7.64842 7.77858 7.89738 8.30536 8.94683 9.53063 11.03155 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.062022 B = 0.002225 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.342771 B =12581.500580 C =12749.120144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.068 3.932 12 O -0.357 6.357 13 C 0.455 3.545 14 O -0.511 6.511 15 C -0.103 4.103 16 C -0.079 4.079 17 H 0.108 0.892 18 C -0.120 4.120 19 C -0.587 4.587 20 S 2.388 3.612 21 O -0.937 6.937 22 O -0.941 6.941 23 C -0.587 4.587 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.408 -23.487 -1.803 24.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.147 4.147 11 C -0.005 4.005 12 O -0.274 6.274 13 C 0.298 3.702 14 O -0.400 6.400 15 C -0.141 4.141 16 C -0.098 4.098 17 H 0.126 0.874 18 C -0.158 4.158 19 C -0.717 4.717 20 S 2.572 3.428 21 O -0.934 6.934 22 O -0.938 6.938 23 C -0.717 4.717 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.103 0.897 34 H 0.128 0.872 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.160 0.840 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.912 -24.372 -1.630 24.915 hybrid contribution 0.205 1.886 -0.159 1.904 sum 5.117 -22.486 -1.789 23.130 Atomic orbital electron populations 1.69962 1.06105 1.26825 1.50454 1.25035 0.94888 0.99410 0.95152 0.86537 0.79801 0.83177 0.78156 1.20592 1.21168 1.19802 1.21163 0.93115 0.90664 1.51123 0.92428 1.19052 0.93828 0.90766 0.97672 1.21770 0.99948 0.90999 1.01982 1.23531 0.91170 0.83561 1.02206 1.86500 1.42779 1.15206 1.82893 1.23507 0.88628 0.85273 0.72814 1.90651 1.16981 1.86860 1.45531 1.21326 0.97564 0.88383 1.06840 1.21693 0.95849 0.92113 1.00167 0.87393 1.22138 1.02267 0.94517 0.96884 1.30465 1.15735 1.10062 1.15453 1.09086 0.78650 0.78057 0.77034 1.93633 1.72306 1.76157 1.51324 1.93619 1.70802 1.62801 1.66575 1.30751 1.12702 1.14907 1.13293 0.92850 0.96261 0.96234 0.92133 0.92134 0.91456 0.91424 0.86769 0.86992 0.89671 0.87220 0.84326 0.84355 0.83994 0.83970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.74 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.11 -2.17 5.53 -26.73 -0.15 -2.31 16 11 C 0.07 1.17 5.47 37.16 0.20 1.37 16 12 O -0.36 -5.26 10.22 -39.25 -0.40 -5.66 16 13 C 0.45 5.55 7.74 36.01 0.28 5.82 16 14 O -0.51 -7.46 14.04 -18.75 -0.26 -7.73 16 15 C -0.10 -0.71 5.30 -27.88 -0.15 -0.86 16 16 C -0.08 -0.48 2.21 -89.08 -0.20 -0.68 16 17 H 0.11 0.72 7.93 -51.93 -0.41 0.31 16 18 C -0.12 -0.74 5.34 -25.67 -0.14 -0.88 16 19 C -0.59 -3.01 7.26 37.76 0.27 -2.74 16 20 S 2.39 15.63 6.10 -107.50 -0.66 14.98 16 21 O -0.94 -9.82 18.15 -57.73 -1.05 -10.87 16 22 O -0.94 -9.39 18.15 -57.73 -1.05 -10.43 16 23 C -0.59 -2.42 6.67 38.24 0.26 -2.17 16 24 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.07 1.16 8.13 -51.93 -0.42 0.73 16 30 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 31 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.11 0.54 8.07 -51.93 -0.42 0.12 16 33 H 0.08 0.39 8.04 -51.93 -0.42 -0.03 16 34 H 0.11 0.91 6.61 -51.93 -0.34 0.57 16 35 H 0.14 0.52 8.14 -51.92 -0.42 0.09 16 36 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.14 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.14 0.32 8.10 -51.93 -0.42 -0.10 16 LS Contribution 332.09 15.07 5.00 5.00 Total: -1.00 -36.59 332.09 -8.64 -45.23 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: -5.78 Total: -5.79 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -0.17 Total: -15.22 kcal Atomic # 7 Polarization: -26.44 SS G_CDS: 0.74 Total: -25.70 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -2.76 Total: -34.69 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 15.63 SS G_CDS: -0.66 Total: 14.98 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -36.59 -8.64 -45.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248600860.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.250 kcal (2) G-P(sol) polarization free energy of solvation -36.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.01 seconds