Wall clock time and date at job start Tue Mar 31 2020 06:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99989 * 2 1 4 4 H 1.48500 * 109.46827 * 269.99414 * 3 2 1 5 5 H 1.48496 * 109.46977 * 29.99917 * 3 2 1 6 6 H 1.48504 * 109.46766 * 149.99908 * 3 2 1 7 7 C 1.37875 * 119.99658 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00012 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00444 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47478 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47189 * 179.97438 * 10 9 7 12 12 O 1.45205 * 109.46903 * 179.97438 * 11 10 9 13 13 C 1.34228 * 116.99701 * 179.97438 * 12 11 10 14 14 O 1.20828 * 120.00333 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99774 * 179.97438 * 13 12 11 16 16 C 1.53004 * 109.46938 * 180.02562 * 15 13 12 17 17 H 1.09002 * 110.04972 * 306.40765 * 16 15 13 18 18 C 1.53878 * 110.02785 * 67.80910 * 16 15 13 19 19 C 1.54159 * 108.70185 * 166.47004 * 18 16 15 20 20 S 1.82920 * 105.08823 * 332.09231 * 19 18 16 21 21 O 1.42103 * 109.35097 * 115.52458 * 20 19 18 22 22 O 1.42104 * 109.35329 * 248.59000 * 20 19 18 23 23 C 1.55045 * 110.02594 * 185.00395 * 16 15 13 24 24 H 0.96999 * 119.99831 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.46918 * 59.99299 * 9 7 2 26 26 H 1.09000 * 109.46883 * 299.99972 * 9 7 2 27 27 H 1.09000 * 109.46961 * 59.99829 * 10 9 7 28 28 H 1.09002 * 109.47200 * 300.00599 * 10 9 7 29 29 H 1.09003 * 109.47084 * 60.00589 * 11 10 9 30 30 H 1.08990 * 109.47196 * 300.00289 * 11 10 9 31 31 H 1.08997 * 109.46877 * 60.00767 * 15 13 12 32 32 H 1.08994 * 109.47366 * 300.00515 * 15 13 12 33 33 H 1.09005 * 109.64521 * 46.61962 * 18 16 15 34 34 H 1.08996 * 109.64754 * 286.32351 * 18 16 15 35 35 H 1.09010 * 110.31795 * 213.18865 * 19 18 16 36 36 H 1.08996 * 110.32170 * 90.99780 * 19 18 16 37 37 H 1.08999 * 110.79230 * 80.00204 * 23 16 15 38 38 H 1.08997 * 110.78846 * 316.54216 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 8 2.4237 -6.0908 0.0006 13 6 1.9106 -7.3311 0.0016 14 8 0.7127 -7.4894 0.0024 15 6 2.8286 -8.5263 0.0004 16 6 1.9953 -9.8094 0.0013 17 1 1.2830 -9.7919 0.8262 18 6 1.2488 -9.9539 -1.3366 19 6 0.7021 -11.3912 -1.4449 20 16 1.8470 -12.4124 -0.4487 21 8 1.1465 -12.9593 0.6602 22 8 2.5866 -13.2671 -1.3100 23 6 2.9232 -11.0451 0.1272 24 1 -0.4850 0.8400 -0.0004 25 1 0.6245 -2.5570 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6044 0.8905 28 1 2.8719 -3.6044 -0.8894 29 1 0.8532 -5.0451 -0.8887 30 1 0.8538 -5.0445 0.8913 31 1 3.4586 -8.5013 0.8895 32 1 3.4562 -8.5016 -0.8904 33 1 1.9342 -9.7593 -2.1615 34 1 0.4227 -9.2438 -1.3738 35 1 0.7074 -11.7209 -2.4840 36 1 -0.3065 -11.4445 -1.0353 37 1 3.2237 -11.1994 1.1635 38 1 3.7954 -10.9413 -0.5182 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248600860.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:44 Heat of formation + Delta-G solvation = -207.261098 kcal Electronic energy + Delta-G solvation = -20471.682457 eV Core-core repulsion = 17018.742654 eV Total energy + Delta-G solvation = -3452.939803 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.56202 -38.56491 -38.05129 -37.24838 -36.96790 -35.91917 -33.70414 -32.13481 -29.84734 -28.69579 -25.70130 -24.88334 -22.60317 -22.15018 -21.11497 -19.80938 -18.78995 -18.48369 -17.93457 -17.63623 -17.53770 -16.78246 -16.56789 -16.48956 -15.84507 -15.35709 -15.04318 -14.70323 -14.56340 -14.01966 -13.97557 -13.70879 -13.39038 -13.20261 -13.08558 -13.03233 -12.82829 -12.74168 -12.51023 -12.40339 -12.31306 -12.05873 -11.83546 -11.72066 -11.63012 -11.45167 -11.37217 -11.26541 -11.01802 -10.57529 -8.22182 -6.33613 -0.86658 1.23327 1.41775 1.43051 1.53518 1.55764 1.80620 2.41358 2.67788 3.07754 3.11957 3.30457 3.58995 3.65336 3.84415 3.97975 4.02210 4.02536 4.08724 4.28148 4.43756 4.44688 4.71071 4.73116 4.77761 4.81630 4.89676 4.92971 5.08872 5.12594 5.16949 5.46112 5.60909 5.64337 5.80432 6.19198 6.75654 6.83180 7.36165 8.89989 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.062022 B = 0.002225 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.342771 B =12581.500580 C =12749.120144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.025 3.975 10 C -0.095 4.095 11 C 0.079 3.921 12 O -0.360 6.360 13 C 0.449 3.551 14 O -0.540 6.540 15 C -0.095 4.095 16 C -0.084 4.084 17 H 0.098 0.902 18 C -0.125 4.125 19 C -0.577 4.577 20 S 2.392 3.608 21 O -0.985 6.985 22 O -0.979 6.979 23 C -0.560 4.560 24 H 0.264 0.736 25 H -0.004 1.004 26 H -0.005 1.005 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.155 0.845 36 H 0.139 0.861 37 H 0.162 0.838 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.877 -23.536 -2.072 24.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.012 4.012 10 C -0.132 4.132 11 C 0.005 3.995 12 O -0.276 6.276 13 C 0.294 3.706 14 O -0.430 6.430 15 C -0.133 4.133 16 C -0.104 4.104 17 H 0.116 0.884 18 C -0.164 4.164 19 C -0.708 4.708 20 S 2.581 3.419 21 O -0.982 6.982 22 O -0.976 6.976 23 C -0.692 4.692 24 H 0.073 0.927 25 H 0.014 0.986 26 H 0.014 0.986 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.126 0.874 34 H 0.105 0.895 35 H 0.173 0.827 36 H 0.157 0.843 37 H 0.180 0.820 38 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 7.386 -24.482 -1.900 25.642 hybrid contribution -0.601 1.885 -0.086 1.981 sum 6.785 -22.596 -1.986 23.676 Atomic orbital electron populations 1.70098 1.07894 1.27919 1.51537 1.26013 0.95780 1.03545 0.94646 0.85396 0.78661 0.78156 0.78533 1.19715 1.20933 1.18505 1.21636 0.93765 0.91894 1.50735 0.91630 1.18941 0.94319 0.92609 0.95370 1.21446 0.98665 0.90564 1.02535 1.23061 0.90926 0.83826 1.01671 1.86488 1.41944 1.15732 1.83451 1.24663 0.89227 0.85300 0.71389 1.90656 1.18682 1.86927 1.46759 1.21551 0.96807 0.85311 1.09602 1.21722 0.96169 0.92659 0.99819 0.88398 1.22202 1.02137 0.94115 0.97925 1.30369 1.15265 1.09065 1.16071 1.08713 0.78598 0.78580 0.76032 1.93571 1.73606 1.78106 1.52896 1.93568 1.71592 1.65108 1.67306 1.30594 1.12281 1.11148 1.15144 0.92703 0.98553 0.98622 0.91555 0.91411 0.91965 0.92157 0.84099 0.83816 0.87446 0.89542 0.82737 0.84309 0.82004 0.80909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.17 13.29 21.45 0.28 -55.88 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 3 Si 0.97 43.22 29.54 68.60 2.03 45.24 16 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.54 -30.04 9.11 25.60 0.23 -29.81 16 8 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.09 -3.71 5.53 30.59 0.17 -3.54 16 11 C 0.08 2.69 5.47 71.98 0.39 3.08 16 12 O -0.36 -9.94 10.22 -51.40 -0.53 -10.46 16 13 C 0.45 10.08 7.74 71.24 0.55 10.64 16 14 O -0.54 -15.47 14.04 21.96 0.31 -15.16 16 15 C -0.09 -0.94 5.30 29.85 0.16 -0.78 16 16 C -0.08 -0.79 2.21 -9.80 -0.02 -0.81 16 17 H 0.10 1.16 7.93 -2.39 -0.02 1.14 16 18 C -0.13 -1.30 5.34 31.28 0.17 -1.13 16 19 C -0.58 -5.19 7.26 72.37 0.53 -4.67 16 20 S 2.39 28.75 6.10 -56.49 -0.34 28.41 16 21 O -0.98 -20.78 18.15 -127.47 -2.31 -23.09 16 22 O -0.98 -18.71 18.15 -127.47 -2.31 -21.02 16 23 C -0.56 -2.63 6.67 72.68 0.48 -2.14 16 24 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 25 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 26 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.06 2.16 8.13 -2.39 -0.02 2.14 16 30 H 0.06 2.12 8.13 -2.39 -0.02 2.10 16 31 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.14 0.61 8.07 -2.39 -0.02 0.59 16 33 H 0.11 0.63 8.04 -2.38 -0.02 0.61 16 34 H 0.09 1.38 6.61 -2.39 -0.02 1.36 16 35 H 0.15 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.16 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.17 -0.13 8.10 -2.39 -0.02 -0.15 16 Total: -1.00 -80.94 332.09 1.44 -79.50 By element: Atomic # 1 Polarization: -1.18 SS G_CDS: 1.04 Total: -0.14 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: 3.27 Total: -27.40 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.28 Total: -55.88 kcal Atomic # 8 Polarization: -64.90 SS G_CDS: -4.84 Total: -69.74 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 28.75 SS G_CDS: -0.34 Total: 28.41 kcal Total: -80.94 1.44 -79.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248600860.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.756 kcal (2) G-P(sol) polarization free energy of solvation -80.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds