Wall clock time and date at job start Tue Mar 31 2020 08:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 111.00004 * 2 1 4 4 C 1.50700 * 109.46980 * 66.04900 * 3 2 1 5 5 H 1.07998 * 119.99704 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99958 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00048 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 119.99908 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47508 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47344 * 119.99876 * 8 6 4 11 11 H 1.48506 * 109.47358 * 240.00077 * 8 6 4 12 12 C 1.46903 * 110.99766 * 236.04819 * 2 1 3 13 13 C 1.50698 * 109.47059 * 199.60444 * 12 2 1 14 14 C 1.39233 * 120.04520 * 254.94365 * 13 12 2 15 15 N 1.31118 * 121.77460 * 179.97438 * 14 13 12 16 16 C 1.33711 * 121.35385 * 0.02562 * 15 14 13 17 17 C 1.40586 * 121.07649 * 180.02562 * 16 15 14 18 18 C 1.36089 * 119.74629 * 179.97438 * 17 16 15 19 19 C 1.39334 * 121.06378 * 0.02562 * 18 17 16 20 20 C 1.36162 * 120.86079 * 359.97438 * 19 18 17 21 21 C 1.40390 * 119.61471 * 359.95935 * 20 19 18 22 22 C 1.36760 * 120.03524 * 74.67162 * 13 12 2 23 23 Cl 1.73595 * 120.93925 * 0.02562 * 22 13 12 24 24 H 1.09005 * 109.47411 * 54.94244 * 1 2 3 25 25 H 1.09004 * 109.47347 * 174.94210 * 1 2 3 26 26 H 1.09004 * 109.47008 * 294.93834 * 1 2 3 27 27 H 1.09001 * 109.46923 * 186.04670 * 3 2 1 28 28 H 1.08997 * 109.46989 * 306.05001 * 3 2 1 29 29 H 0.97001 * 119.99925 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47170 * 319.60867 * 12 2 1 31 31 H 1.09002 * 109.47459 * 79.60868 * 12 2 1 32 32 H 1.08001 * 119.11128 * 359.97438 * 14 13 12 33 33 H 1.07997 * 120.12413 * 0.02562 * 17 16 15 34 34 H 1.07999 * 119.46353 * 179.97438 * 18 17 16 35 35 H 1.07997 * 119.57263 * 179.97438 * 19 18 17 36 36 H 1.08001 * 120.19176 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0740 1.5114 2.0485 6 6 2.0277 3.3491 1.5290 7 7 2.7137 4.0012 0.6159 8 14 1.5827 4.1868 3.1382 9 1 0.8136 3.2449 3.9905 10 1 2.8242 4.5932 3.8445 11 1 0.7561 5.3884 2.8587 12 6 1.9954 -0.7660 -1.1377 13 6 3.4249 -1.1555 -0.8626 14 6 4.4648 -0.4925 -1.5090 15 7 5.7205 -0.8033 -1.2948 16 6 6.0609 -1.7756 -0.4424 17 6 7.4093 -2.1036 -0.2167 18 6 7.7252 -3.0978 0.6572 19 6 6.7320 -3.8010 1.3358 20 6 5.4155 -3.5116 1.1430 21 6 5.0531 -2.4910 0.2498 22 6 3.7026 -2.1568 0.0265 23 17 2.4271 -2.9966 0.8520 24 1 -0.3634 0.5903 -0.8412 25 1 -0.3634 -1.0237 -0.0906 26 1 -0.3633 0.4333 0.9319 27 1 3.0797 1.3444 -0.1083 28 1 1.5610 1.9273 -0.8308 29 1 2.9882 4.9173 0.7779 30 1 1.3948 -1.6645 -1.2798 31 1 1.9525 -0.1541 -2.0387 32 1 4.2307 0.2989 -2.2055 33 1 8.1913 -1.5680 -0.7343 34 1 8.7624 -3.3463 0.8268 35 1 7.0099 -4.5858 2.0237 36 1 4.6546 -4.0638 1.6745 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248810696.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:23 Heat of formation + Delta-G solvation = 52.243875 kcal Electronic energy + Delta-G solvation = -20366.167141 eV Core-core repulsion = 17262.038282 eV Total energy + Delta-G solvation = -3104.128859 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.75290 -37.66485 -36.46072 -36.14228 -33.14290 -32.45103 -30.96877 -30.00376 -27.42760 -26.49260 -24.18618 -23.97468 -22.43404 -21.93431 -20.23194 -18.00269 -17.50277 -16.46880 -16.33366 -14.92315 -14.77797 -14.70245 -14.52914 -13.97471 -13.89381 -13.70552 -13.47419 -13.31346 -12.34760 -12.14939 -11.96116 -11.72686 -11.66693 -11.58806 -11.34807 -11.20538 -10.95363 -10.66004 -10.57266 -10.47324 -9.93265 -9.76277 -9.39700 -9.19667 -8.60928 -8.43188 -8.07729 -7.29919 -6.02725 -4.03345 0.42842 0.88702 1.99834 2.22270 2.97816 3.31016 3.38628 3.43317 4.13809 4.40379 4.43560 4.69722 4.72949 4.80480 4.97752 5.16082 5.24578 5.33111 5.35741 5.50051 5.51886 5.71718 5.91296 6.00711 6.04613 6.08870 6.17085 6.32053 6.36486 6.43438 6.55912 6.70788 6.86681 7.23841 7.28712 7.78540 8.01842 8.05531 8.16082 8.51359 9.04011 9.60790 11.08324 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.015961 B = 0.005284 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.900981 B = 5297.470120 C = 5840.244855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.895 3.105 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.091 3.909 13 C -0.104 4.104 14 C 0.162 3.838 15 N -0.474 5.474 16 C 0.133 3.867 17 C -0.091 4.091 18 C -0.105 4.105 19 C -0.121 4.121 20 C -0.091 4.091 21 C -0.097 4.097 22 C 0.039 3.961 23 Cl -0.038 7.038 24 H 0.015 0.985 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.030 0.970 28 H -0.007 1.007 29 H 0.260 0.740 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.166 0.834 33 H 0.136 0.864 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.902 -15.805 -2.733 16.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.256 5.256 3 C 0.067 3.933 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.537 5.537 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C -0.038 4.038 13 C -0.108 4.108 14 C -0.011 4.011 15 N -0.182 5.182 16 C 0.011 3.989 17 C -0.110 4.110 18 C -0.125 4.125 19 C -0.139 4.139 20 C -0.110 4.110 21 C -0.100 4.100 22 C 0.004 3.996 23 Cl -0.009 7.009 24 H 0.033 0.967 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.048 0.952 28 H 0.010 0.990 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.183 0.817 33 H 0.154 0.846 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.769 -15.533 -2.649 16.780 hybrid contribution -1.219 0.648 0.701 1.548 sum 4.550 -14.885 -1.948 15.687 Atomic orbital electron populations 1.22173 0.88188 0.98843 1.01345 1.62136 1.07053 1.17954 1.38418 1.19810 0.95470 0.81275 0.96779 1.21165 1.34679 0.96836 1.01673 0.91850 1.24968 0.95305 0.97385 0.96900 1.69957 1.38360 1.11404 1.34010 0.86480 0.78157 0.79337 0.83694 1.19671 1.21058 1.21101 1.20958 0.90022 0.98688 0.94088 1.20594 0.98608 0.94878 0.96719 1.22944 0.86541 0.95838 0.95743 1.68057 1.20230 1.13979 1.15945 1.18841 0.93557 0.92642 0.93821 1.20766 0.93954 0.97611 0.98625 1.20873 0.99712 0.95702 0.96176 1.20856 0.92647 1.00285 1.00092 1.21018 0.97100 0.96081 0.96811 1.18639 0.91865 0.99239 1.00247 1.20805 0.88495 0.95464 0.94866 1.98358 1.49535 1.76041 1.76923 0.96691 0.93707 0.90809 0.95209 0.98964 0.92999 0.90475 0.93854 0.81702 0.84624 0.85410 0.85586 0.85055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 9.31 60.06 0.56 1.36 16 2 N -0.53 -11.04 4.58 -245.82 -1.13 -12.17 16 3 C 0.19 4.87 4.55 -4.97 -0.02 4.85 16 4 C -0.50 -14.12 8.58 -34.44 -0.30 -14.42 16 5 H 0.06 1.77 7.10 -52.49 -0.37 1.40 16 6 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 8 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 C 0.09 1.57 4.48 -4.98 -0.02 1.55 16 13 C -0.10 -1.82 4.79 -104.79 -0.50 -2.32 16 14 C 0.16 2.82 10.12 -17.49 -0.18 2.64 16 15 N -0.47 -8.42 10.34 -11.00 -0.11 -8.53 16 16 C 0.13 2.20 6.60 -84.86 -0.56 1.63 16 17 C -0.09 -1.22 9.98 -39.47 -0.39 -1.61 16 18 C -0.10 -1.15 9.94 -39.95 -0.40 -1.55 16 19 C -0.12 -1.34 9.96 -39.92 -0.40 -1.73 16 20 C -0.09 -1.21 9.46 -39.52 -0.37 -1.59 16 21 C -0.10 -1.56 5.74 -106.78 -0.61 -2.18 16 22 C 0.04 0.66 6.36 -39.11 -0.25 0.41 16 23 Cl -0.04 -0.58 26.32 -51.86 -1.36 -1.94 16 24 H 0.01 0.27 8.08 -51.93 -0.42 -0.15 16 25 H 0.04 0.70 7.85 -51.93 -0.41 0.30 16 26 H 0.07 1.48 7.01 -51.93 -0.36 1.11 16 27 H 0.03 0.82 6.88 -51.93 -0.36 0.46 16 28 H -0.01 -0.20 8.07 -51.93 -0.42 -0.62 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.08 1.18 7.24 -51.93 -0.38 0.80 16 31 H 0.04 0.72 7.80 -51.93 -0.41 0.31 16 32 H 0.17 2.61 7.98 -52.49 -0.42 2.19 16 33 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.13 1.56 7.07 -52.49 -0.37 1.19 16 LS Contribution 318.29 15.07 4.80 4.80 Total: -1.00 -31.27 318.29 -9.95 -41.22 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -4.31 Total: -2.79 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -3.54 Total: -11.47 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: -0.50 Total: -46.65 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.36 Total: -1.94 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.27 -9.95 -41.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248810696.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.462 kcal (2) G-P(sol) polarization free energy of solvation -31.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds