Wall clock time and date at job start Tue Mar 31 2020 08:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 111.00004 * 2 1 4 4 C 1.50700 * 109.46980 * 66.04900 * 3 2 1 5 5 H 1.07998 * 119.99704 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99958 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00048 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 119.99908 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47508 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47344 * 119.99876 * 8 6 4 11 11 H 1.48506 * 109.47358 * 240.00077 * 8 6 4 12 12 C 1.46903 * 110.99766 * 236.04819 * 2 1 3 13 13 C 1.50698 * 109.47059 * 199.60444 * 12 2 1 14 14 C 1.39233 * 120.04520 * 254.94365 * 13 12 2 15 15 N 1.31118 * 121.77460 * 179.97438 * 14 13 12 16 16 C 1.33711 * 121.35385 * 0.02562 * 15 14 13 17 17 C 1.40586 * 121.07649 * 180.02562 * 16 15 14 18 18 C 1.36089 * 119.74629 * 179.97438 * 17 16 15 19 19 C 1.39334 * 121.06378 * 0.02562 * 18 17 16 20 20 C 1.36162 * 120.86079 * 359.97438 * 19 18 17 21 21 C 1.40390 * 119.61471 * 359.95935 * 20 19 18 22 22 C 1.36760 * 120.03524 * 74.67162 * 13 12 2 23 23 Cl 1.73595 * 120.93925 * 0.02562 * 22 13 12 24 24 H 1.09005 * 109.47411 * 54.94244 * 1 2 3 25 25 H 1.09004 * 109.47347 * 174.94210 * 1 2 3 26 26 H 1.09004 * 109.47008 * 294.93834 * 1 2 3 27 27 H 1.09001 * 109.46923 * 186.04670 * 3 2 1 28 28 H 1.08997 * 109.46989 * 306.05001 * 3 2 1 29 29 H 0.97001 * 119.99925 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47170 * 319.60867 * 12 2 1 31 31 H 1.09002 * 109.47459 * 79.60868 * 12 2 1 32 32 H 1.08001 * 119.11128 * 359.97438 * 14 13 12 33 33 H 1.07997 * 120.12413 * 0.02562 * 17 16 15 34 34 H 1.07999 * 119.46353 * 179.97438 * 18 17 16 35 35 H 1.07997 * 119.57263 * 179.97438 * 19 18 17 36 36 H 1.08001 * 120.19176 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0740 1.5114 2.0485 6 6 2.0277 3.3491 1.5290 7 7 2.7137 4.0012 0.6159 8 14 1.5827 4.1868 3.1382 9 1 0.8136 3.2449 3.9905 10 1 2.8242 4.5932 3.8445 11 1 0.7561 5.3884 2.8587 12 6 1.9954 -0.7660 -1.1377 13 6 3.4249 -1.1555 -0.8626 14 6 4.4648 -0.4925 -1.5090 15 7 5.7205 -0.8033 -1.2948 16 6 6.0609 -1.7756 -0.4424 17 6 7.4093 -2.1036 -0.2167 18 6 7.7252 -3.0978 0.6572 19 6 6.7320 -3.8010 1.3358 20 6 5.4155 -3.5116 1.1430 21 6 5.0531 -2.4910 0.2498 22 6 3.7026 -2.1568 0.0265 23 17 2.4271 -2.9966 0.8520 24 1 -0.3634 0.5903 -0.8412 25 1 -0.3634 -1.0237 -0.0906 26 1 -0.3633 0.4333 0.9319 27 1 3.0797 1.3444 -0.1083 28 1 1.5610 1.9273 -0.8308 29 1 2.9882 4.9173 0.7779 30 1 1.3948 -1.6645 -1.2798 31 1 1.9525 -0.1541 -2.0387 32 1 4.2307 0.2989 -2.2055 33 1 8.1913 -1.5680 -0.7343 34 1 8.7624 -3.3463 0.8268 35 1 7.0099 -4.5858 2.0237 36 1 4.6546 -4.0638 1.6745 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248810696.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:22 Heat of formation + Delta-G solvation = 33.240810 kcal Electronic energy + Delta-G solvation = -20366.991175 eV Core-core repulsion = 17262.038282 eV Total energy + Delta-G solvation = -3104.952893 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -41.91519 -38.95910 -37.68361 -37.57286 -34.82512 -34.08050 -32.20074 -31.09513 -29.39459 -27.85162 -25.78206 -25.34057 -23.83020 -23.03767 -21.88873 -19.12453 -18.76925 -18.36924 -17.63554 -16.71183 -16.30572 -15.83617 -15.70627 -15.51163 -15.25713 -15.07614 -14.76314 -14.57640 -14.01450 -13.74849 -13.33115 -13.12049 -13.08673 -12.77047 -12.73338 -12.60773 -12.55372 -12.40074 -12.29269 -11.94455 -11.69906 -11.28018 -10.93830 -10.65004 -10.60936 -9.75350 -9.19042 -8.99858 -8.19980 -6.28525 -0.70838 -0.26104 0.85878 0.97925 1.38325 1.39474 1.52336 1.88547 2.39717 2.98173 3.13451 3.26937 3.41294 3.52361 3.63824 3.80918 4.05961 4.15257 4.25137 4.35761 4.43349 4.50292 4.58796 4.61658 4.79933 4.91105 5.00354 5.04300 5.11899 5.21492 5.33708 5.35035 5.42700 5.45698 5.65977 5.87175 6.06454 6.33524 6.60987 6.78987 6.87906 7.40729 8.91124 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.015961 B = 0.005284 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.900981 B = 5297.470120 C = 5840.244855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.537 5.537 3 C 0.211 3.789 4 C -0.519 4.519 5 H 0.061 0.939 6 C 0.002 3.998 7 N -0.933 5.933 8 Si 0.963 3.037 9 H -0.264 1.264 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.096 3.904 13 C -0.125 4.125 14 C 0.143 3.857 15 N -0.493 5.493 16 C 0.106 3.894 17 C -0.111 4.111 18 C -0.086 4.086 19 C -0.105 4.105 20 C -0.107 4.107 21 C -0.115 4.115 22 C 0.033 3.967 23 Cl -0.027 7.027 24 H 0.014 0.986 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.003 0.997 28 H -0.034 1.034 29 H 0.263 0.737 30 H 0.101 0.899 31 H 0.046 0.954 32 H 0.166 0.834 33 H 0.146 0.854 34 H 0.170 0.830 35 H 0.167 0.833 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.623 -17.811 -1.018 18.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.261 5.261 3 C 0.085 3.915 4 C -0.557 4.557 5 H 0.079 0.921 6 C -0.195 4.195 7 N -0.574 5.574 8 Si 0.788 3.212 9 H -0.188 1.188 10 H -0.208 1.208 11 H -0.202 1.202 12 C -0.032 4.032 13 C -0.129 4.129 14 C -0.030 4.030 15 N -0.202 5.202 16 C -0.015 4.015 17 C -0.129 4.129 18 C -0.105 4.105 19 C -0.122 4.122 20 C -0.126 4.126 21 C -0.117 4.117 22 C -0.003 4.003 23 Cl 0.003 6.997 24 H 0.032 0.968 25 H 0.098 0.902 26 H 0.075 0.925 27 H 0.022 0.978 28 H -0.016 1.016 29 H 0.072 0.928 30 H 0.119 0.881 31 H 0.064 0.936 32 H 0.183 0.817 33 H 0.163 0.837 34 H 0.188 0.812 35 H 0.185 0.815 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.474 -17.561 -0.939 18.740 hybrid contribution -1.326 1.117 0.195 1.745 sum 5.148 -16.443 -0.744 17.246 Atomic orbital electron populations 1.22184 0.86821 1.00878 1.00425 1.62000 1.08304 1.15245 1.40580 1.19391 0.93756 0.83527 0.94868 1.21492 1.34435 0.97314 1.02486 0.92090 1.25842 0.95163 0.98163 1.00372 1.70083 1.39462 1.11799 1.36036 0.85429 0.77958 0.78388 0.79442 1.18754 1.20831 1.20241 1.20981 0.90456 0.98934 0.92839 1.20575 0.98389 0.95902 0.97990 1.22999 0.86940 0.96433 0.96587 1.68022 1.20308 1.14936 1.16886 1.19339 0.95209 0.92833 0.94137 1.21049 0.92828 0.99028 1.00011 1.21386 1.01877 0.93526 0.93752 1.21386 0.91526 1.00075 0.99258 1.21257 0.98773 0.95785 0.96758 1.18898 0.91420 1.00285 1.01143 1.20997 0.89405 0.95299 0.94588 1.98346 1.49101 1.75688 1.76612 0.96762 0.90213 0.92456 0.97843 1.01594 0.92848 0.88116 0.93615 0.81720 0.83654 0.81250 0.81513 0.83907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.65 9.31 127.69 1.19 2.84 16 2 N -0.54 -22.60 4.58 -931.63 -4.27 -26.87 16 3 C 0.21 11.12 4.55 85.56 0.39 11.51 16 4 C -0.52 -29.59 8.58 25.60 0.22 -29.37 16 5 H 0.06 3.44 7.10 -2.91 -0.02 3.41 16 6 C 0.00 0.14 5.46 84.65 0.46 0.61 16 7 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 8 Si 0.96 45.09 29.54 68.60 2.03 47.12 16 9 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 12 C 0.10 3.36 4.48 85.56 0.38 3.74 16 13 C -0.12 -4.50 4.79 -19.97 -0.10 -4.59 16 14 C 0.14 5.28 10.12 85.04 0.86 6.14 16 15 N -0.49 -18.28 10.34 -188.71 -1.95 -20.23 16 16 C 0.11 3.53 6.60 40.27 0.27 3.79 16 17 C -0.11 -2.81 9.98 22.34 0.22 -2.58 16 18 C -0.09 -1.56 9.94 22.03 0.22 -1.34 16 19 C -0.10 -1.90 9.96 22.05 0.22 -1.68 16 20 C -0.11 -2.61 9.46 22.31 0.21 -2.40 16 21 C -0.11 -3.65 5.74 -21.26 -0.12 -3.77 16 22 C 0.03 1.11 6.36 22.58 0.14 1.25 16 23 Cl -0.03 -0.79 26.32 -2.72 -0.07 -0.86 16 24 H 0.01 0.51 8.08 -2.38 -0.02 0.49 16 25 H 0.08 2.36 7.85 -2.38 -0.02 2.34 16 26 H 0.06 2.28 7.01 -2.38 -0.02 2.27 16 27 H 0.00 0.20 6.88 -2.39 -0.02 0.18 16 28 H -0.03 -1.91 8.07 -2.39 -0.02 -1.93 16 29 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 30 H 0.10 2.98 7.24 -2.39 -0.02 2.96 16 31 H 0.05 1.57 7.80 -2.39 -0.02 1.55 16 32 H 0.17 5.73 7.98 -2.91 -0.02 5.71 16 33 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 34 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 35 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 36 H 0.14 3.06 7.07 -2.91 -0.02 3.04 16 Total: -1.00 -69.31 318.29 1.68 -67.63 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: 1.09 Total: 5.60 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: 4.57 Total: -15.85 kcal Atomic # 7 Polarization: -97.70 SS G_CDS: -5.93 Total: -103.63 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.07 Total: -0.86 kcal Total: -69.31 1.68 -67.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248810696.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.874 kcal (2) G-P(sol) polarization free energy of solvation -69.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds