Wall clock time and date at job start Tue Mar 31 2020 08:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86795 * 119.99930 * 2 1 4 4 H 1.48505 * 109.46903 * 274.97999 * 3 2 1 5 5 H 1.48500 * 109.47555 * 34.97708 * 3 2 1 6 6 H 1.48498 * 109.47179 * 154.98178 * 3 2 1 7 7 C 1.40045 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00183 * 173.77450 * 7 2 1 9 9 C 1.46377 * 120.00032 * 353.49246 * 7 2 1 10 10 O 1.21687 * 119.99964 * 6.00748 * 9 7 2 11 11 N 1.34774 * 119.99929 * 185.99698 * 9 7 2 12 12 C 1.46502 * 119.99910 * 180.02562 * 11 9 7 13 13 C 1.53007 * 109.47020 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.46726 * 179.97438 * 13 12 11 15 15 O 1.42902 * 110.45403 * 62.39934 * 14 13 12 16 16 C 1.51383 * 110.51229 * 299.64247 * 14 13 12 17 17 O 1.21287 * 126.44309 * 61.33615 * 16 14 13 18 18 N 1.34373 * 107.11746 * 241.35817 * 16 14 13 19 19 C 1.39527 * 112.24219 * 359.97438 * 18 16 14 20 20 C 1.39369 * 130.82465 * 179.97438 * 19 18 16 21 21 C 1.37940 * 120.13383 * 179.97438 * 20 19 18 22 22 C 1.38303 * 120.37299 * 0.04391 * 21 20 19 23 23 C 1.38393 * 119.82564 * 359.97438 * 22 21 20 24 24 C 1.37676 * 119.91597 * 359.97438 * 23 22 21 25 25 H 0.96999 * 119.99751 * 0.02562 * 1 2 3 26 26 H 0.97000 * 120.00634 * 0.02562 * 11 9 7 27 27 H 1.09002 * 109.46984 * 299.99918 * 12 11 9 28 28 H 1.09001 * 109.47339 * 60.00193 * 12 11 9 29 29 H 1.09002 * 109.46814 * 299.99580 * 13 12 11 30 30 H 1.09001 * 109.47268 * 59.99707 * 13 12 11 31 31 H 0.96700 * 113.99744 * 179.97438 * 15 14 13 32 32 H 0.97001 * 123.87736 * 179.97438 * 18 16 14 33 33 H 1.08004 * 119.93522 * 359.97438 * 20 19 18 34 34 H 1.07995 * 119.81403 * 180.02562 * 21 20 19 35 35 H 1.07997 * 120.08904 * 180.02562 * 22 21 20 36 36 H 1.07998 * 120.04081 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1071 -1.3949 5 1 1.4948 2.6200 0.8026 6 1 3.5870 1.4121 0.5921 7 6 2.0070 -1.2128 0.0005 8 1 3.0822 -1.2157 -0.1009 9 6 1.2822 -2.4763 0.1448 10 8 0.0654 -2.4821 0.1543 11 7 1.9625 -3.6333 0.2668 12 6 1.2371 -4.8980 0.4106 13 6 2.2378 -6.0492 0.5304 14 6 1.4801 -7.3699 0.6812 15 8 0.6856 -7.6251 -0.4789 16 6 0.6168 -7.3472 1.9245 17 8 -0.2958 -6.5820 2.1541 18 7 1.0520 -8.3338 2.7263 19 6 2.1221 -9.0343 2.1686 20 6 2.8594 -10.1115 2.6568 21 6 3.8893 -10.6419 1.9080 22 6 4.1992 -10.1102 0.6694 23 6 3.4717 -9.0403 0.1781 24 6 2.4427 -8.5097 0.9231 25 1 -0.4850 0.8401 -0.0004 26 1 2.9325 -3.6288 0.2594 27 1 0.6170 -4.8614 1.3063 28 1 0.6045 -5.0554 -0.4630 29 1 2.8581 -6.0860 -0.3652 30 1 2.8701 -5.8916 1.4042 31 1 0.1835 -8.4505 -0.4379 32 1 0.6665 -8.5358 3.5932 33 1 2.6240 -10.5318 3.6235 34 1 4.4570 -11.4769 2.2911 35 1 5.0062 -10.5293 0.0868 36 1 3.7110 -8.6221 -0.7885 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001303193485.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:26:23 Heat of formation + Delta-G solvation = -78.129751 kcal Electronic energy + Delta-G solvation = -22494.003158 eV Core-core repulsion = 18943.511710 eV Total energy + Delta-G solvation = -3550.491448 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.04677 -38.72534 -37.31518 -36.72293 -35.81104 -33.86522 -32.36575 -31.80966 -30.26020 -29.39705 -26.94608 -25.62523 -23.05345 -22.53171 -21.85717 -20.50877 -19.53125 -18.42788 -17.34540 -17.25156 -16.88856 -16.19339 -15.93223 -15.17654 -14.69904 -14.53897 -14.25130 -14.17378 -13.98639 -13.80643 -13.47737 -13.15159 -12.73554 -12.31232 -12.13675 -12.07824 -11.82168 -11.27385 -11.20894 -11.07477 -11.00208 -10.82214 -10.47878 -10.30126 -10.13764 -9.63774 -9.32334 -8.74884 -8.38748 -7.47307 -7.33052 -6.08855 -4.52892 0.76706 0.95543 2.20993 2.66519 3.19854 3.26441 3.30770 3.41338 3.68874 3.97472 4.07531 4.20431 4.46835 4.66977 4.70292 4.79603 4.92615 5.06088 5.19781 5.41633 5.52160 5.54479 5.64090 5.73762 5.92313 5.94045 6.03503 6.13251 6.25896 6.46385 6.65832 6.77170 6.88425 7.27993 7.52934 7.75881 8.05439 8.22896 8.43899 9.12342 9.67406 10.71725 10.91722 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.029365 B = 0.003424 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.301076 B = 8175.331611 C = 8569.777073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.577 6.577 11 N -0.769 5.769 12 C 0.128 3.872 13 C -0.103 4.103 14 C 0.161 3.839 15 O -0.513 6.513 16 C 0.499 3.501 17 O -0.455 6.455 18 N -0.665 5.665 19 C 0.155 3.845 20 C -0.146 4.146 21 C -0.078 4.078 22 C -0.147 4.147 23 C -0.042 4.042 24 C -0.178 4.178 25 H 0.267 0.733 26 H 0.377 0.623 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.379 0.621 32 H 0.413 0.587 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.745 -23.768 4.005 25.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.085 0.915 9 C 0.358 3.642 10 O -0.460 6.460 11 N -0.425 5.425 12 C 0.003 3.997 13 C -0.141 4.141 14 C 0.116 3.884 15 O -0.317 6.317 16 C 0.284 3.716 17 O -0.323 6.323 18 N -0.311 5.311 19 C 0.057 3.943 20 C -0.167 4.167 21 C -0.096 4.096 22 C -0.166 4.166 23 C -0.060 4.060 24 C -0.181 4.181 25 H 0.078 0.922 26 H 0.208 0.792 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.226 0.774 32 H 0.251 0.749 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.316 -22.535 3.845 24.327 hybrid contribution 0.552 -0.012 0.802 0.974 sum 8.869 -22.547 4.647 24.670 Atomic orbital electron populations 1.70046 1.07066 1.27100 1.35492 1.25711 0.94579 1.00241 0.92724 0.86379 0.80240 0.81640 0.78577 1.19881 1.20475 1.18917 1.20876 0.94037 0.89671 1.53869 0.91474 1.18215 0.87187 0.82349 0.76460 1.90611 1.14089 1.86369 1.54902 1.46124 1.08334 1.05956 1.82056 1.20962 0.93538 0.82863 1.02356 1.21678 0.98204 0.90490 1.03695 1.20442 0.88426 0.94884 0.84635 1.86759 1.62620 1.45627 1.36742 1.21456 0.84200 0.79501 0.86449 1.90903 1.27569 1.37804 1.76072 1.43858 1.32521 1.32771 1.21965 1.18238 0.89145 0.93667 0.93211 1.20385 0.97960 0.96882 1.01516 1.20929 0.95670 0.98885 0.94132 1.21123 1.01146 0.97647 0.96714 1.20370 0.92053 0.94451 0.99165 1.20482 1.01147 1.00367 0.96097 0.92207 0.79182 0.91854 0.92339 0.89316 0.90058 0.77411 0.74861 0.85528 0.85144 0.85150 0.84933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -24.15 11.86 55.55 0.66 -23.49 16 2 C 0.09 2.53 5.49 -17.37 -0.10 2.44 16 3 Si 0.91 20.86 29.56 -169.99 -5.03 15.84 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 7 C -0.55 -16.23 9.53 -35.63 -0.34 -16.57 16 8 H 0.07 1.81 7.85 -52.49 -0.41 1.39 16 9 C 0.55 16.92 7.74 -12.99 -0.10 16.82 16 10 O -0.58 -20.17 15.05 5.20 0.08 -20.09 16 11 N -0.77 -18.66 5.55 -61.71 -0.34 -19.00 16 12 C 0.13 2.79 5.21 -4.04 -0.02 2.77 16 13 C -0.10 -1.60 4.69 -26.73 -0.13 -1.72 16 14 C 0.16 2.19 1.06 -92.37 -0.10 2.10 16 15 O -0.51 -7.02 12.60 -35.23 -0.44 -7.46 16 16 C 0.50 7.40 7.46 -10.83 -0.08 7.31 16 17 O -0.45 -8.83 15.83 5.55 0.09 -8.74 16 18 N -0.67 -7.09 5.88 -9.70 -0.06 -7.14 16 19 C 0.15 1.49 7.11 -83.69 -0.60 0.90 16 20 C -0.15 -1.06 10.07 -39.27 -0.40 -1.45 16 21 C -0.08 -0.48 10.02 -39.67 -0.40 -0.88 16 22 C -0.15 -1.00 10.07 -39.50 -0.40 -1.39 16 23 C -0.04 -0.36 10.03 -39.73 -0.40 -0.76 16 24 C -0.18 -1.87 5.31 -104.37 -0.55 -2.43 16 25 H 0.27 7.59 8.29 -40.82 -0.34 7.25 16 26 H 0.38 7.83 8.45 -40.82 -0.35 7.49 16 27 H 0.06 1.56 5.90 -51.93 -0.31 1.25 16 28 H 0.06 1.41 7.80 -51.93 -0.40 1.00 16 29 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.38 3.60 9.02 45.56 0.41 4.01 16 32 H 0.41 3.42 8.96 -40.82 -0.37 3.06 16 33 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 34 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 35 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 36 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 316.24 15.07 4.77 4.77 Total: -1.00 -40.20 316.24 -6.97 -47.17 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -3.09 Total: 11.02 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: -3.60 Total: 7.13 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.26 Total: -49.63 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -0.28 Total: -36.29 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -40.20 -6.97 -47.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001303193485.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.959 kcal (2) G-P(sol) polarization free energy of solvation -40.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds