Wall clock time and date at job start Tue Mar 31 2020 08:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86795 * 119.99930 * 2 1 4 4 H 1.48505 * 109.46903 * 274.97999 * 3 2 1 5 5 H 1.48500 * 109.47555 * 34.97708 * 3 2 1 6 6 H 1.48498 * 109.47179 * 154.98178 * 3 2 1 7 7 C 1.40045 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00183 * 173.77450 * 7 2 1 9 9 C 1.46377 * 120.00032 * 353.49246 * 7 2 1 10 10 O 1.21687 * 119.99964 * 6.00748 * 9 7 2 11 11 N 1.34774 * 119.99929 * 185.99698 * 9 7 2 12 12 C 1.46502 * 119.99910 * 180.02562 * 11 9 7 13 13 C 1.53007 * 109.47020 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.46726 * 179.97438 * 13 12 11 15 15 O 1.42902 * 110.45403 * 62.39934 * 14 13 12 16 16 C 1.51383 * 110.51229 * 299.64247 * 14 13 12 17 17 O 1.21287 * 126.44309 * 61.33615 * 16 14 13 18 18 N 1.34373 * 107.11746 * 241.35817 * 16 14 13 19 19 C 1.39527 * 112.24219 * 359.97438 * 18 16 14 20 20 C 1.39369 * 130.82465 * 179.97438 * 19 18 16 21 21 C 1.37940 * 120.13383 * 179.97438 * 20 19 18 22 22 C 1.38303 * 120.37299 * 0.04391 * 21 20 19 23 23 C 1.38393 * 119.82564 * 359.97438 * 22 21 20 24 24 C 1.37676 * 119.91597 * 359.97438 * 23 22 21 25 25 H 0.96999 * 119.99751 * 0.02562 * 1 2 3 26 26 H 0.97000 * 120.00634 * 0.02562 * 11 9 7 27 27 H 1.09002 * 109.46984 * 299.99918 * 12 11 9 28 28 H 1.09001 * 109.47339 * 60.00193 * 12 11 9 29 29 H 1.09002 * 109.46814 * 299.99580 * 13 12 11 30 30 H 1.09001 * 109.47268 * 59.99707 * 13 12 11 31 31 H 0.96700 * 113.99744 * 179.97438 * 15 14 13 32 32 H 0.97001 * 123.87736 * 179.97438 * 18 16 14 33 33 H 1.08004 * 119.93522 * 359.97438 * 20 19 18 34 34 H 1.07995 * 119.81403 * 180.02562 * 21 20 19 35 35 H 1.07997 * 120.08904 * 180.02562 * 22 21 20 36 36 H 1.07998 * 120.04081 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1071 -1.3949 5 1 1.4948 2.6200 0.8026 6 1 3.5870 1.4121 0.5921 7 6 2.0070 -1.2128 0.0005 8 1 3.0822 -1.2157 -0.1009 9 6 1.2822 -2.4763 0.1448 10 8 0.0654 -2.4821 0.1543 11 7 1.9625 -3.6333 0.2668 12 6 1.2371 -4.8980 0.4106 13 6 2.2378 -6.0492 0.5304 14 6 1.4801 -7.3699 0.6812 15 8 0.6856 -7.6251 -0.4789 16 6 0.6168 -7.3472 1.9245 17 8 -0.2958 -6.5820 2.1541 18 7 1.0520 -8.3338 2.7263 19 6 2.1221 -9.0343 2.1686 20 6 2.8594 -10.1115 2.6568 21 6 3.8893 -10.6419 1.9080 22 6 4.1992 -10.1102 0.6694 23 6 3.4717 -9.0403 0.1781 24 6 2.4427 -8.5097 0.9231 25 1 -0.4850 0.8401 -0.0004 26 1 2.9325 -3.6288 0.2594 27 1 0.6170 -4.8614 1.3063 28 1 0.6045 -5.0554 -0.4630 29 1 2.8581 -6.0860 -0.3652 30 1 2.8701 -5.8916 1.4042 31 1 0.1835 -8.4505 -0.4379 32 1 0.6665 -8.5358 3.5932 33 1 2.6240 -10.5318 3.6235 34 1 4.4570 -11.4769 2.2911 35 1 5.0062 -10.5293 0.0868 36 1 3.7110 -8.6221 -0.7885 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001303193485.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:26:22 Heat of formation + Delta-G solvation = -113.311112 kcal Electronic energy + Delta-G solvation = -22495.528736 eV Core-core repulsion = 18943.511710 eV Total energy + Delta-G solvation = -3552.017026 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 4.76 seconds Orbital eigenvalues (eV) -42.98103 -39.68804 -39.37606 -37.95266 -36.72237 -35.72436 -34.56116 -33.03007 -31.40854 -30.26593 -28.70622 -27.21610 -24.28016 -23.55655 -22.64549 -21.75364 -21.61304 -19.29652 -19.23147 -18.39323 -17.86612 -17.52392 -17.17174 -16.91006 -16.09752 -15.92815 -15.72586 -15.37185 -15.09279 -14.86993 -14.67743 -14.38118 -14.18529 -13.94728 -13.70115 -13.13040 -12.94371 -12.85634 -12.76643 -12.68308 -12.57967 -12.31074 -12.00892 -11.92486 -11.64362 -10.93615 -10.77504 -9.97281 -9.86886 -9.51325 -9.11649 -8.30549 -6.87048 0.02128 0.35494 1.20908 1.39510 1.42283 1.58721 1.78157 2.24744 2.46215 2.72722 2.77268 2.91937 3.03814 3.32498 3.59830 3.82560 3.98704 4.11892 4.17550 4.20824 4.41931 4.49386 4.56622 4.59981 4.97509 5.01453 5.04801 5.10828 5.31048 5.42837 5.52653 5.58615 5.66087 5.85782 6.01795 6.19934 6.24805 6.41753 6.76283 6.84758 7.54716 8.48438 8.66902 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.029365 B = 0.003424 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.301076 B = 8175.331611 C = 8569.777073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.023 3.977 3 Si 1.006 2.994 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.245 1.245 7 C -0.573 4.573 8 H 0.093 0.907 9 C 0.532 3.468 10 O -0.636 6.636 11 N -0.754 5.754 12 C 0.136 3.864 13 C -0.090 4.090 14 C 0.161 3.839 15 O -0.533 6.533 16 C 0.492 3.508 17 O -0.519 6.519 18 N -0.648 5.648 19 C 0.133 3.867 20 C -0.137 4.137 21 C -0.071 4.071 22 C -0.137 4.137 23 C -0.051 4.051 24 C -0.187 4.187 25 H 0.275 0.725 26 H 0.397 0.603 27 H 0.031 0.969 28 H 0.027 0.973 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.394 0.606 32 H 0.423 0.577 33 H 0.151 0.849 34 H 0.165 0.835 35 H 0.159 0.841 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.747 -25.374 4.356 29.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.192 4.192 3 Si 0.824 3.176 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.168 1.168 7 C -0.610 4.610 8 H 0.111 0.889 9 C 0.336 3.664 10 O -0.524 6.524 11 N -0.409 5.409 12 C 0.011 3.989 13 C -0.128 4.128 14 C 0.116 3.884 15 O -0.340 6.340 16 C 0.278 3.722 17 O -0.394 6.394 18 N -0.294 5.294 19 C 0.037 3.963 20 C -0.157 4.157 21 C -0.089 4.089 22 C -0.155 4.155 23 C -0.070 4.070 24 C -0.190 4.190 25 H 0.084 0.916 26 H 0.231 0.769 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.126 0.874 30 H 0.114 0.886 31 H 0.244 0.756 32 H 0.263 0.737 33 H 0.169 0.831 34 H 0.183 0.817 35 H 0.176 0.824 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 12.413 -24.257 4.206 27.571 hybrid contribution -0.632 0.290 0.680 0.973 sum 11.781 -23.967 4.887 27.149 Atomic orbital electron populations 1.70236 1.09861 1.29022 1.36363 1.27135 0.95561 1.05378 0.91109 0.84901 0.78853 0.74496 0.79316 1.18437 1.19841 1.16786 1.21442 0.95385 0.89987 1.54138 0.88886 1.18786 0.86842 0.84455 0.76287 1.90561 1.16587 1.87587 1.57641 1.45782 1.09270 1.05516 1.80361 1.20859 0.94630 0.84078 0.99340 1.21563 0.96921 0.88991 1.05290 1.20317 0.88964 0.95184 0.83947 1.86699 1.63225 1.47061 1.36966 1.21701 0.83580 0.79464 0.87445 1.90867 1.30414 1.40530 1.77541 1.43624 1.32437 1.31530 1.21824 1.18452 0.89587 0.95049 0.93243 1.20758 0.97141 0.95360 1.02486 1.21396 0.94901 0.99115 0.93531 1.21507 1.00819 0.96225 0.96977 1.20571 0.91768 0.95214 0.99407 1.20224 1.01766 0.99847 0.97176 0.91555 0.76888 0.95036 0.95485 0.87366 0.88555 0.75602 0.73654 0.83109 0.81705 0.82368 0.84360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -53.66 11.86 21.84 0.26 -53.40 16 2 C 0.02 1.33 5.49 85.30 0.47 1.80 16 3 Si 1.01 42.62 29.56 68.60 2.03 44.65 16 4 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.24 -9.50 7.11 99.48 0.71 -8.79 16 7 C -0.57 -34.41 9.53 24.83 0.24 -34.18 16 8 H 0.09 4.91 7.85 -2.91 -0.02 4.89 16 9 C 0.53 33.90 7.74 86.36 0.67 34.57 16 10 O -0.64 -47.29 15.05 -4.31 -0.06 -47.36 16 11 N -0.75 -37.93 5.55 -467.39 -2.59 -40.52 16 12 C 0.14 6.31 5.21 86.38 0.45 6.76 16 13 C -0.09 -2.84 4.69 30.60 0.14 -2.70 16 14 C 0.16 4.47 1.06 -11.93 -0.01 4.46 16 15 O -0.53 -15.25 12.60 -148.98 -1.88 -17.13 16 16 C 0.49 15.43 7.46 87.94 0.66 16.08 16 17 O -0.52 -22.09 15.83 -3.05 -0.05 -22.14 16 18 N -0.65 -13.77 5.88 -303.22 -1.78 -15.55 16 19 C 0.13 2.31 7.11 38.35 0.27 2.58 16 20 C -0.14 -1.46 10.07 22.47 0.23 -1.23 16 21 C -0.07 -0.53 10.02 22.21 0.22 -0.31 16 22 C -0.14 -1.23 10.07 22.32 0.22 -1.01 16 23 C -0.05 -0.74 10.03 22.17 0.22 -0.52 16 24 C -0.19 -3.67 5.31 -19.70 -0.10 -3.77 16 25 H 0.27 16.08 8.29 -92.71 -0.77 15.31 16 26 H 0.40 16.53 8.45 -92.71 -0.78 15.74 16 27 H 0.03 1.68 5.90 -2.39 -0.01 1.67 16 28 H 0.03 1.40 7.80 -2.39 -0.02 1.39 16 29 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.39 7.93 9.02 -74.06 -0.67 7.26 16 32 H 0.42 6.97 8.96 -92.71 -0.83 6.14 16 33 H 0.15 0.87 8.06 -2.91 -0.02 0.85 16 34 H 0.17 0.18 8.06 -2.91 -0.02 0.15 16 35 H 0.16 0.58 8.06 -2.91 -0.02 0.56 16 36 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -94.97 316.24 -1.53 -96.49 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: -1.12 Total: 32.41 kcal Atomic # 6 Polarization: 18.87 SS G_CDS: 3.67 Total: 22.54 kcal Atomic # 7 Polarization: -105.35 SS G_CDS: -4.12 Total: -109.47 kcal Atomic # 8 Polarization: -84.64 SS G_CDS: -1.99 Total: -86.63 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -94.97 -1.53 -96.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001303193485.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.816 kcal (2) G-P(sol) polarization free energy of solvation -94.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.76 seconds