Wall clock time and date at job start Tue Mar 31 2020 08:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86807 * 119.99919 * 2 1 4 4 H 1.48490 * 109.47236 * 274.98759 * 3 2 1 5 5 H 1.48499 * 109.46843 * 34.98942 * 3 2 1 6 6 H 1.48503 * 109.46801 * 154.98472 * 3 2 1 7 7 C 1.40049 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99685 * 186.14350 * 7 2 1 9 9 C 1.46367 * 120.00073 * 6.14952 * 7 2 1 10 10 O 1.21693 * 120.00000 * 353.93435 * 9 7 2 11 11 N 1.34778 * 120.00363 * 173.94003 * 9 7 2 12 12 C 1.46497 * 119.99979 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.46882 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47226 * 180.02562 * 13 12 11 15 15 O 1.42901 * 110.45524 * 300.69731 * 14 13 12 16 16 C 1.51394 * 110.51240 * 63.30225 * 14 13 12 17 17 O 1.21281 * 126.44046 * 298.76594 * 16 14 13 18 18 N 1.34364 * 107.10931 * 118.78411 * 16 14 13 19 19 C 1.39531 * 112.25196 * 0.02562 * 18 16 14 20 20 C 1.39369 * 130.82381 * 180.02562 * 19 18 16 21 21 C 1.37934 * 120.13111 * 180.02562 * 20 19 18 22 22 C 1.38297 * 120.37325 * 359.95535 * 21 20 19 23 23 C 1.38396 * 119.82967 * 0.02651 * 22 21 20 24 24 C 1.37680 * 119.91355 * 359.97438 * 23 22 21 25 25 H 0.97004 * 120.00292 * 359.97438 * 1 2 3 26 26 H 0.96999 * 119.99613 * 359.97438 * 11 9 7 27 27 H 1.09000 * 109.47034 * 60.00751 * 12 11 9 28 28 H 1.09000 * 109.47567 * 300.00110 * 12 11 9 29 29 H 1.09004 * 109.47265 * 60.00286 * 13 12 11 30 30 H 1.09000 * 109.47180 * 300.00433 * 13 12 11 31 31 H 0.96699 * 114.00706 * 181.89992 * 15 14 13 32 32 H 0.97006 * 123.87376 * 180.02562 * 18 16 14 33 33 H 1.07998 * 119.93401 * 359.97221 * 20 19 18 34 34 H 1.07998 * 119.81137 * 179.97438 * 21 20 19 35 35 H 1.08001 * 120.09031 * 179.97438 * 22 21 20 36 36 H 1.08000 * 120.04294 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3828 2.1073 -1.3947 5 1 1.4948 2.6199 0.8028 6 1 3.5870 1.4121 0.5921 7 6 2.0069 -1.2129 -0.0005 8 1 3.0823 -1.2155 0.0996 9 6 1.2815 -2.4767 -0.1369 10 8 0.0645 -2.4827 -0.1388 11 7 1.9611 -3.6341 -0.2603 12 6 1.2349 -4.8991 -0.3962 13 6 2.2349 -6.0505 -0.5194 14 6 1.4765 -7.3716 -0.6619 15 8 0.6346 -7.5891 0.4721 16 6 0.6611 -7.3802 -1.9375 17 8 -0.2369 -6.6170 -2.2236 18 7 1.1192 -8.3928 -2.6926 19 6 2.1622 -9.0832 -2.0743 20 6 2.9095 -10.1789 -2.5024 21 6 3.9063 -10.6934 -1.6997 22 6 4.1730 -10.1273 -0.4664 23 6 3.4354 -9.0388 -0.0346 24 6 2.4398 -8.5234 -0.8339 25 1 -0.4851 0.8401 0.0004 26 1 2.9311 -3.6293 -0.2591 27 1 0.6092 -4.8648 -1.2881 28 1 0.6079 -5.0543 0.4818 29 1 2.8610 -6.0849 0.3723 30 1 2.8616 -5.8950 -1.3975 31 1 0.1516 -8.4265 0.4487 32 1 0.7653 -8.6180 -3.5673 33 1 2.7072 -10.6266 -3.4642 34 1 4.4820 -11.5429 -2.0364 35 1 4.9542 -10.5341 0.1585 36 1 3.6410 -8.5938 0.9277 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001303193486.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:26:38 Heat of formation + Delta-G solvation = -78.484417 kcal Electronic energy + Delta-G solvation = -22484.145582 eV Core-core repulsion = 18933.638754 eV Total energy + Delta-G solvation = -3550.506827 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 12.46 seconds Orbital eigenvalues (eV) -42.04656 -38.72303 -37.32295 -36.72134 -35.81236 -33.85861 -32.36461 -31.81128 -30.26079 -29.40275 -26.95355 -25.62810 -23.04990 -22.52160 -21.86309 -20.51824 -19.52866 -18.42836 -17.33954 -17.25732 -16.89433 -16.19154 -15.92040 -15.17835 -14.70523 -14.55019 -14.25467 -14.17323 -13.98583 -13.80791 -13.47141 -13.16402 -12.73442 -12.30963 -12.13796 -12.05814 -11.83307 -11.26685 -11.20042 -11.07380 -11.03653 -10.80919 -10.48825 -10.30374 -10.12566 -9.63745 -9.32847 -8.75254 -8.39254 -7.47218 -7.32933 -6.08698 -4.52915 0.76268 0.95053 2.21054 2.66172 3.20183 3.26527 3.30452 3.40871 3.68863 3.97630 4.07403 4.20389 4.46373 4.66633 4.70374 4.79258 4.92233 5.05687 5.19445 5.41924 5.52180 5.54281 5.64052 5.73278 5.92191 5.94015 6.03163 6.12839 6.25548 6.46147 6.65403 6.77760 6.88879 7.28549 7.53093 7.75695 8.05577 8.23095 8.44064 9.12433 9.67495 10.71846 10.91800 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.029484 B = 0.003414 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.433108 B = 8199.786071 C = 8596.659897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.577 6.577 11 N -0.769 5.769 12 C 0.129 3.871 13 C -0.102 4.102 14 C 0.161 3.839 15 O -0.513 6.513 16 C 0.500 3.500 17 O -0.456 6.456 18 N -0.665 5.665 19 C 0.155 3.845 20 C -0.146 4.146 21 C -0.077 4.077 22 C -0.147 4.147 23 C -0.042 4.042 24 C -0.178 4.178 25 H 0.267 0.733 26 H 0.377 0.623 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.378 0.622 32 H 0.413 0.587 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.811 -23.895 -3.576 26.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.085 0.915 9 C 0.358 3.642 10 O -0.460 6.460 11 N -0.425 5.425 12 C 0.004 3.996 13 C -0.140 4.140 14 C 0.116 3.884 15 O -0.317 6.317 16 C 0.284 3.716 17 O -0.324 6.324 18 N -0.311 5.311 19 C 0.058 3.942 20 C -0.167 4.167 21 C -0.096 4.096 22 C -0.166 4.166 23 C -0.060 4.060 24 C -0.181 4.181 25 H 0.078 0.922 26 H 0.208 0.792 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.226 0.774 32 H 0.251 0.749 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.367 -22.646 -3.456 24.388 hybrid contribution 0.594 -0.045 -0.807 1.003 sum 8.961 -22.690 -4.263 24.765 Atomic orbital electron populations 1.70042 1.07062 1.27100 1.35507 1.25712 0.94578 1.00238 0.92723 0.86372 0.80203 0.81637 0.78573 1.19896 1.20511 1.18932 1.20883 0.94021 0.89645 1.53914 0.91456 1.18216 0.87195 0.82357 0.76437 1.90612 1.14094 1.86398 1.54878 1.46124 1.08327 1.05925 1.82100 1.20929 0.93543 0.82804 1.02354 1.21674 0.98179 0.90523 1.03644 1.20444 0.88122 0.94956 0.84856 1.86765 1.61091 1.43811 1.40040 1.21467 0.83604 0.79521 0.86968 1.90897 1.27734 1.38843 1.74961 1.43863 1.34258 1.31470 1.21545 1.18237 0.89603 0.93708 0.92687 1.20383 0.98169 0.96642 1.01553 1.20928 0.95903 0.98962 0.93805 1.21124 1.01148 0.97324 0.97027 1.20376 0.92125 0.94579 0.98959 1.20480 1.01586 1.00041 0.96037 0.92205 0.79187 0.91887 0.92292 0.89382 0.90105 0.77422 0.74876 0.85526 0.85138 0.85142 0.84918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -24.15 11.85 55.55 0.66 -23.49 16 2 C 0.09 2.54 5.49 -17.37 -0.10 2.44 16 3 Si 0.91 20.88 29.56 -169.99 -5.03 15.85 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.55 -16.23 9.53 -35.63 -0.34 -16.57 16 8 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 9 C 0.55 16.92 7.74 -12.99 -0.10 16.82 16 10 O -0.58 -20.16 15.05 5.20 0.08 -20.08 16 11 N -0.77 -18.65 5.55 -61.72 -0.34 -18.99 16 12 C 0.13 2.81 5.26 -4.04 -0.02 2.79 16 13 C -0.10 -1.59 4.68 -26.73 -0.13 -1.72 16 14 C 0.16 2.19 1.06 -92.37 -0.10 2.10 16 15 O -0.51 -7.04 12.47 -35.23 -0.44 -7.48 16 16 C 0.50 7.38 7.50 -10.83 -0.08 7.30 16 17 O -0.46 -8.82 15.94 5.56 0.09 -8.74 16 18 N -0.67 -7.05 5.88 -9.70 -0.06 -7.11 16 19 C 0.16 1.48 7.11 -83.69 -0.60 0.89 16 20 C -0.15 -1.05 10.07 -39.27 -0.40 -1.45 16 21 C -0.08 -0.48 10.01 -39.67 -0.40 -0.88 16 22 C -0.15 -0.99 10.07 -39.50 -0.40 -1.39 16 23 C -0.04 -0.36 10.04 -39.73 -0.40 -0.76 16 24 C -0.18 -1.87 5.31 -104.37 -0.55 -2.43 16 25 H 0.27 7.59 8.29 -40.82 -0.34 7.25 16 26 H 0.38 7.83 8.45 -40.82 -0.35 7.48 16 27 H 0.06 1.55 6.00 -51.93 -0.31 1.24 16 28 H 0.06 1.42 7.71 -51.93 -0.40 1.02 16 29 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.38 3.60 9.02 45.56 0.41 4.01 16 32 H 0.41 3.40 8.96 -40.82 -0.37 3.03 16 33 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 35 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 36 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 316.31 15.07 4.77 4.77 Total: -1.00 -40.21 316.31 -6.97 -47.17 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -3.10 Total: 10.95 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: -3.60 Total: 7.16 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.26 Total: -49.59 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -0.27 Total: -36.30 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -40.21 -6.97 -47.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001303193486.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.312 kcal (2) G-P(sol) polarization free energy of solvation -40.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.46 seconds