Wall clock time and date at job start Tue Mar 31 2020 08:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86807 * 119.99919 * 2 1 4 4 H 1.48490 * 109.47236 * 274.98759 * 3 2 1 5 5 H 1.48499 * 109.46843 * 34.98942 * 3 2 1 6 6 H 1.48503 * 109.46801 * 154.98472 * 3 2 1 7 7 C 1.40049 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99685 * 186.14350 * 7 2 1 9 9 C 1.46367 * 120.00073 * 6.14952 * 7 2 1 10 10 O 1.21693 * 120.00000 * 353.93435 * 9 7 2 11 11 N 1.34778 * 120.00363 * 173.94003 * 9 7 2 12 12 C 1.46497 * 119.99979 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.46882 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47226 * 180.02562 * 13 12 11 15 15 O 1.42901 * 110.45524 * 300.69731 * 14 13 12 16 16 C 1.51394 * 110.51240 * 63.30225 * 14 13 12 17 17 O 1.21281 * 126.44046 * 298.76594 * 16 14 13 18 18 N 1.34364 * 107.10931 * 118.78411 * 16 14 13 19 19 C 1.39531 * 112.25196 * 0.02562 * 18 16 14 20 20 C 1.39369 * 130.82381 * 180.02562 * 19 18 16 21 21 C 1.37934 * 120.13111 * 180.02562 * 20 19 18 22 22 C 1.38297 * 120.37325 * 359.95535 * 21 20 19 23 23 C 1.38396 * 119.82967 * 0.02651 * 22 21 20 24 24 C 1.37680 * 119.91355 * 359.97438 * 23 22 21 25 25 H 0.97004 * 120.00292 * 359.97438 * 1 2 3 26 26 H 0.96999 * 119.99613 * 359.97438 * 11 9 7 27 27 H 1.09000 * 109.47034 * 60.00751 * 12 11 9 28 28 H 1.09000 * 109.47567 * 300.00110 * 12 11 9 29 29 H 1.09004 * 109.47265 * 60.00286 * 13 12 11 30 30 H 1.09000 * 109.47180 * 300.00433 * 13 12 11 31 31 H 0.96699 * 114.00706 * 181.89992 * 15 14 13 32 32 H 0.97006 * 123.87376 * 180.02562 * 18 16 14 33 33 H 1.07998 * 119.93401 * 359.97221 * 20 19 18 34 34 H 1.07998 * 119.81137 * 179.97438 * 21 20 19 35 35 H 1.08001 * 120.09031 * 179.97438 * 22 21 20 36 36 H 1.08000 * 120.04294 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3828 2.1073 -1.3947 5 1 1.4948 2.6199 0.8028 6 1 3.5870 1.4121 0.5921 7 6 2.0069 -1.2129 -0.0005 8 1 3.0823 -1.2155 0.0996 9 6 1.2815 -2.4767 -0.1369 10 8 0.0645 -2.4827 -0.1388 11 7 1.9611 -3.6341 -0.2603 12 6 1.2349 -4.8991 -0.3962 13 6 2.2349 -6.0505 -0.5194 14 6 1.4765 -7.3716 -0.6619 15 8 0.6346 -7.5891 0.4721 16 6 0.6611 -7.3802 -1.9375 17 8 -0.2369 -6.6170 -2.2236 18 7 1.1192 -8.3928 -2.6926 19 6 2.1622 -9.0832 -2.0743 20 6 2.9095 -10.1789 -2.5024 21 6 3.9063 -10.6934 -1.6997 22 6 4.1730 -10.1273 -0.4664 23 6 3.4354 -9.0388 -0.0346 24 6 2.4398 -8.5234 -0.8339 25 1 -0.4851 0.8401 0.0004 26 1 2.9311 -3.6293 -0.2591 27 1 0.6092 -4.8648 -1.2881 28 1 0.6079 -5.0543 0.4818 29 1 2.8610 -6.0849 0.3723 30 1 2.8616 -5.8950 -1.3975 31 1 0.1516 -8.4265 0.4487 32 1 0.7653 -8.6180 -3.5673 33 1 2.7072 -10.6266 -3.4642 34 1 4.4820 -11.5429 -2.0364 35 1 4.9542 -10.5341 0.1585 36 1 3.6410 -8.5938 0.9277 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001303193486.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:26:33 Heat of formation + Delta-G solvation = -113.651074 kcal Electronic energy + Delta-G solvation = -22485.670522 eV Core-core repulsion = 18933.638754 eV Total energy + Delta-G solvation = -3552.031768 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 6.39 seconds Orbital eigenvalues (eV) -42.97708 -39.68030 -39.38037 -37.95895 -36.72052 -35.71948 -34.55998 -33.02703 -31.40918 -30.26860 -28.70948 -27.22307 -24.26268 -23.55801 -22.64648 -21.76275 -21.60927 -19.30149 -19.22728 -18.38155 -17.87726 -17.52221 -17.16184 -16.90184 -16.09707 -15.92454 -15.73728 -15.37314 -15.10259 -14.86995 -14.68092 -14.38327 -14.17903 -13.94956 -13.68423 -13.11570 -12.94236 -12.88015 -12.77823 -12.68983 -12.55250 -12.31408 -11.99489 -11.93061 -11.65228 -10.94321 -10.77165 -9.97454 -9.86857 -9.51174 -9.11817 -8.30406 -6.87068 0.02048 0.35314 1.21207 1.39575 1.42284 1.58578 1.78187 2.24743 2.46318 2.73356 2.77109 2.92369 3.03426 3.32064 3.59908 3.82450 3.99114 4.12044 4.17395 4.20874 4.41906 4.49155 4.56500 4.60019 4.97728 5.01692 5.04986 5.10708 5.31175 5.42804 5.52565 5.58535 5.65978 5.85881 6.01669 6.20106 6.24922 6.42543 6.76410 6.84835 7.54792 8.48516 8.66999 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.029484 B = 0.003414 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.433108 B = 8199.786071 C = 8596.659897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.023 3.977 3 Si 1.006 2.994 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.244 1.244 7 C -0.573 4.573 8 H 0.093 0.907 9 C 0.532 3.468 10 O -0.636 6.636 11 N -0.754 5.754 12 C 0.137 3.863 13 C -0.090 4.090 14 C 0.161 3.839 15 O -0.533 6.533 16 C 0.493 3.507 17 O -0.520 6.520 18 N -0.648 5.648 19 C 0.133 3.867 20 C -0.137 4.137 21 C -0.071 4.071 22 C -0.137 4.137 23 C -0.051 4.051 24 C -0.187 4.187 25 H 0.275 0.725 26 H 0.397 0.603 27 H 0.030 0.970 28 H 0.028 0.972 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.394 0.606 32 H 0.423 0.577 33 H 0.151 0.849 34 H 0.166 0.834 35 H 0.159 0.841 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.804 -25.528 -3.800 29.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.192 4.192 3 Si 0.825 3.175 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.167 1.167 7 C -0.609 4.609 8 H 0.111 0.889 9 C 0.336 3.664 10 O -0.524 6.524 11 N -0.409 5.409 12 C 0.012 3.988 13 C -0.127 4.127 14 C 0.116 3.884 15 O -0.340 6.340 16 C 0.279 3.721 17 O -0.394 6.394 18 N -0.294 5.294 19 C 0.037 3.963 20 C -0.157 4.157 21 C -0.089 4.089 22 C -0.155 4.155 23 C -0.070 4.070 24 C -0.191 4.191 25 H 0.084 0.916 26 H 0.231 0.769 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.126 0.874 30 H 0.113 0.887 31 H 0.244 0.756 32 H 0.263 0.737 33 H 0.169 0.831 34 H 0.183 0.817 35 H 0.176 0.824 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 12.454 -24.396 -3.689 27.638 hybrid contribution -0.588 0.266 -0.721 0.967 sum 11.867 -24.130 -4.409 27.249 Atomic orbital electron populations 1.70232 1.09855 1.29023 1.36372 1.27133 0.95562 1.05371 0.91112 0.84895 0.78925 0.74528 0.79171 1.18783 1.19702 1.16655 1.21446 0.95358 0.89960 1.54182 0.88884 1.18787 0.86851 0.84464 0.76262 1.90562 1.16587 1.87613 1.57616 1.45782 1.09266 1.05484 1.80400 1.20824 0.94635 0.84023 0.99332 1.21559 0.96914 0.89028 1.05231 1.20321 0.88690 0.95275 0.84132 1.86706 1.61704 1.45323 1.40249 1.21705 0.82980 0.79561 0.87896 1.90861 1.30613 1.41518 1.76426 1.43625 1.34061 1.30202 1.21529 1.18450 0.90154 0.95076 0.92602 1.20756 0.97229 0.95139 1.02604 1.21395 0.95134 0.99278 0.93112 1.21506 1.00684 0.95915 0.97421 1.20573 0.91908 0.95395 0.99089 1.20218 1.02193 0.99416 0.97230 0.91551 0.76893 0.95164 0.95344 0.87360 0.88678 0.75594 0.73651 0.83091 0.81698 0.82376 0.84378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -53.65 11.85 21.84 0.26 -53.40 16 2 C 0.02 1.34 5.49 85.31 0.47 1.80 16 3 Si 1.01 42.65 29.56 68.60 2.03 44.68 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.24 -9.40 7.11 99.48 0.71 -8.69 16 7 C -0.57 -34.40 9.53 24.83 0.24 -34.17 16 8 H 0.09 4.92 7.85 -2.91 -0.02 4.90 16 9 C 0.53 33.89 7.74 86.36 0.67 34.56 16 10 O -0.64 -47.27 15.05 -4.33 -0.07 -47.33 16 11 N -0.75 -37.92 5.55 -467.41 -2.59 -40.51 16 12 C 0.14 6.35 5.26 86.38 0.45 6.81 16 13 C -0.09 -2.83 4.68 30.59 0.14 -2.69 16 14 C 0.16 4.47 1.06 -11.93 -0.01 4.46 16 15 O -0.53 -15.35 12.47 -148.98 -1.86 -17.21 16 16 C 0.49 15.39 7.50 87.94 0.66 16.05 16 17 O -0.52 -22.05 15.94 -3.03 -0.05 -22.09 16 18 N -0.65 -13.67 5.88 -303.23 -1.78 -15.45 16 19 C 0.13 2.30 7.11 38.35 0.27 2.57 16 20 C -0.14 -1.44 10.07 22.47 0.23 -1.21 16 21 C -0.07 -0.52 10.01 22.21 0.22 -0.30 16 22 C -0.14 -1.23 10.07 22.32 0.22 -1.00 16 23 C -0.05 -0.74 10.04 22.18 0.22 -0.52 16 24 C -0.19 -3.66 5.31 -19.70 -0.10 -3.77 16 25 H 0.27 16.08 8.29 -92.70 -0.77 15.31 16 26 H 0.40 16.52 8.45 -92.71 -0.78 15.74 16 27 H 0.03 1.62 6.00 -2.39 -0.01 1.60 16 28 H 0.03 1.47 7.71 -2.39 -0.02 1.46 16 29 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 30 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.39 7.94 9.02 -74.06 -0.67 7.27 16 32 H 0.42 6.89 8.96 -92.70 -0.83 6.06 16 33 H 0.15 0.85 8.06 -2.91 -0.02 0.82 16 34 H 0.17 0.16 8.06 -2.91 -0.02 0.14 16 35 H 0.16 0.58 8.06 -2.91 -0.02 0.56 16 36 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -94.98 316.31 -1.50 -96.48 By element: Atomic # 1 Polarization: 33.34 SS G_CDS: -1.12 Total: 32.23 kcal Atomic # 6 Polarization: 18.92 SS G_CDS: 3.68 Total: 22.61 kcal Atomic # 7 Polarization: -105.24 SS G_CDS: -4.12 Total: -109.36 kcal Atomic # 8 Polarization: -84.66 SS G_CDS: -1.97 Total: -86.63 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -94.98 -1.50 -96.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001303193486.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.170 kcal (2) G-P(sol) polarization free energy of solvation -94.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.40 seconds