Wall clock time and date at job start Tue Mar 31 2020 06:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86802 * 119.99929 * 2 1 4 4 H 1.48503 * 109.46801 * 270.00088 * 3 2 1 5 5 H 1.48497 * 109.47331 * 29.99674 * 3 2 1 6 6 H 1.48504 * 109.47296 * 150.00113 * 3 2 1 7 7 C 1.40026 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99838 * 179.97438 * 7 2 1 9 9 C 1.41314 * 120.00004 * 0.02562 * 7 2 1 10 10 C 1.40585 * 119.78354 * 180.02562 * 9 7 2 11 11 C 1.38354 * 119.14878 * 179.97438 * 10 9 7 12 12 C 1.38643 * 118.67655 * 359.74728 * 11 10 9 13 13 C 1.39750 * 119.49205 * 0.48237 * 12 11 10 14 14 N 1.38822 * 119.58610 * 179.79044 * 13 12 11 15 15 C 1.46508 * 119.99737 * 359.72282 * 14 13 12 16 16 H 1.08990 * 109.47040 * 34.99980 * 15 14 13 17 17 C 1.53002 * 109.46786 * 275.00142 * 15 14 13 18 18 O 1.42902 * 109.47161 * 295.00040 * 17 15 14 19 19 C 1.52997 * 109.47112 * 155.00225 * 15 14 13 20 20 C 1.52997 * 109.47232 * 294.99785 * 19 15 14 21 21 F 1.39905 * 109.47157 * 59.99991 * 20 19 15 22 22 F 1.39900 * 109.47010 * 300.00382 * 20 19 15 23 23 F 1.39897 * 109.47422 * 180.02562 * 20 19 15 24 24 N 1.31984 * 120.83318 * 359.50578 * 13 12 11 25 25 H 0.97001 * 119.99501 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.43076 * 359.97438 * 10 9 7 27 27 H 1.07993 * 120.65883 * 180.02562 * 11 10 9 28 28 H 1.07999 * 120.25335 * 180.26729 * 12 11 10 29 29 H 0.96998 * 120.00615 * 179.72402 * 14 13 12 30 30 H 1.08996 * 109.47544 * 54.99876 * 17 15 14 31 31 H 1.09003 * 109.46980 * 175.00488 * 17 15 14 32 32 H 0.96698 * 113.99829 * 180.02562 * 18 17 15 33 33 H 1.09002 * 109.47045 * 174.99727 * 19 15 14 34 34 H 1.09001 * 109.46922 * 54.99935 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4389 2.6527 0.6999 6 1 3.5391 1.4402 0.7000 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2126 0.0001 9 6 1.3011 -2.4365 0.0005 10 6 2.0086 -3.6513 0.0016 11 6 1.3036 -4.8418 0.0022 12 6 -0.0820 -4.7944 0.0070 13 6 -0.7281 -3.5552 0.0009 14 7 -2.1154 -3.5055 0.0012 15 6 -2.8929 -4.7473 0.0018 16 1 -2.3720 -5.5017 0.5913 17 6 -3.0572 -5.2467 -1.4350 18 8 -3.8406 -4.3106 -2.1780 19 6 -4.2714 -4.4857 0.6117 20 6 -4.1135 -4.1064 2.0855 21 9 -3.3311 -2.9511 2.1885 22 9 -3.4908 -5.1540 2.7725 23 9 -5.3740 -3.8677 2.6433 24 7 -0.0359 -2.4314 0.0004 25 1 -0.4849 0.8401 0.0004 26 1 3.0885 -3.6554 0.0021 27 1 1.8223 -5.7890 0.0034 28 1 -0.6577 -5.7081 0.0118 29 1 -2.5701 -2.6487 0.0011 30 1 -2.0762 -5.3484 -1.8989 31 1 -3.5580 -6.2149 -1.4281 32 1 -3.9860 -4.5635 -3.0999 33 1 -4.8810 -5.3857 0.5315 34 1 -4.7565 -3.6694 0.0764 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320364717.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:09 Heat of formation + Delta-G solvation = -164.491337 kcal Electronic energy + Delta-G solvation = -23799.679522 eV Core-core repulsion = 19703.586415 eV Total energy + Delta-G solvation = -4096.093108 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -49.85448 -47.41864 -47.24058 -38.64805 -37.28668 -35.05948 -33.42698 -31.72756 -30.27701 -28.58381 -27.39578 -25.37205 -23.48443 -21.78052 -21.29970 -20.03706 -18.31059 -18.15411 -17.76191 -17.41535 -16.78342 -16.17303 -15.25107 -14.77288 -14.56447 -14.35098 -14.24484 -14.07310 -13.79197 -13.67619 -13.47827 -13.43678 -13.32285 -12.91205 -12.53037 -12.29909 -12.05806 -11.89728 -11.48039 -11.21993 -11.06157 -10.96054 -10.58569 -10.40645 -9.99091 -9.84142 -9.49982 -8.90159 -7.90024 -7.47301 -6.51964 -6.29004 -4.44831 2.89671 2.95557 3.13793 3.16903 3.25767 3.31459 3.87797 4.01090 4.02616 4.12503 4.30404 4.42426 4.86228 4.93566 5.19923 5.27255 5.35134 5.49618 5.83284 5.87243 6.10166 6.15735 6.55727 6.86174 6.89568 6.93979 7.27804 7.59649 7.67401 7.81451 7.92275 8.18894 8.36752 8.68991 8.82637 9.13728 10.27902 10.43658 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.016845 B = 0.005360 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.773926 B = 5222.862164 C = 5737.348466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.711 5.711 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.433 4.433 8 H 0.083 0.917 9 C 0.292 3.708 10 C -0.317 4.317 11 C -0.031 4.031 12 C -0.374 4.374 13 C 0.416 3.584 14 N -0.725 5.725 15 C 0.167 3.833 16 H 0.100 0.900 17 C 0.063 3.937 18 O -0.565 6.565 19 C -0.168 4.168 20 C 0.450 3.550 21 F -0.166 7.166 22 F -0.186 7.186 23 F -0.193 7.193 24 N -0.527 5.527 25 H 0.270 0.730 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.401 0.599 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.375 0.625 33 H 0.114 0.886 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.844 -8.121 -1.049 12.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.333 5.333 2 C -0.155 4.155 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.465 4.465 8 H 0.101 0.899 9 C 0.165 3.835 10 C -0.340 4.340 11 C -0.055 4.055 12 C -0.400 4.400 13 C 0.176 3.824 14 N -0.362 5.362 15 C 0.059 3.941 16 H 0.118 0.882 17 C -0.017 4.017 18 O -0.370 6.370 19 C -0.207 4.207 20 C 0.396 3.604 21 F -0.147 7.147 22 F -0.168 7.168 23 F -0.174 7.174 24 N -0.248 5.248 25 H 0.081 0.919 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.237 0.763 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.221 0.779 33 H 0.132 0.868 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.450 -7.039 -0.417 12.606 hybrid contribution 0.669 -0.146 -0.301 0.748 sum -9.781 -7.184 -0.718 12.157 Atomic orbital electron populations 1.70155 1.07081 1.27377 1.28660 1.26055 0.94864 1.00888 0.93686 0.86387 0.80506 0.81139 0.79084 1.19540 1.20252 1.18625 1.19582 0.94131 0.89410 1.43379 0.89928 1.18208 0.86914 0.91838 0.86521 1.21533 0.98391 0.93497 1.20542 1.20571 0.93419 0.96323 0.95208 1.20580 0.94650 0.95273 1.29484 1.18449 0.84042 0.90258 0.89633 1.44124 1.02757 1.05947 1.83371 1.20702 0.89172 0.90034 0.94208 0.88211 1.22759 0.95390 0.90687 0.92884 1.86482 1.74150 1.49710 1.26673 1.23095 1.01377 1.06961 0.89280 1.20588 0.73468 0.75439 0.90952 1.93293 1.74729 1.49925 1.96736 1.93166 1.83110 1.58032 1.82490 1.93156 1.41822 1.94601 1.87869 1.68207 1.07563 1.24287 1.24780 0.91892 0.88773 0.89018 0.89383 0.76292 0.92010 0.93558 0.77851 0.86786 0.86189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -19.24 11.46 55.55 0.64 -18.61 16 2 C 0.07 1.83 5.50 -17.34 -0.10 1.74 16 3 Si 0.90 19.03 29.56 -169.99 -5.02 14.01 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16 7 C -0.43 -11.87 9.14 -37.74 -0.34 -12.21 16 8 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 9 C 0.29 8.20 6.55 -85.00 -0.56 7.65 16 10 C -0.32 -8.05 9.83 -38.65 -0.38 -8.43 16 11 C -0.03 -0.71 10.15 -39.39 -0.40 -1.11 16 12 C -0.37 -8.43 8.86 -38.87 -0.34 -8.77 16 13 C 0.42 10.05 7.63 -155.32 -1.18 8.87 16 14 N -0.72 -14.34 3.92 -53.91 -0.21 -14.55 16 15 C 0.17 2.46 1.99 -67.93 -0.14 2.32 16 16 H 0.10 1.50 5.94 -51.93 -0.31 1.19 16 17 C 0.06 0.79 6.77 37.16 0.25 1.04 16 18 O -0.57 -7.12 12.83 -35.23 -0.45 -7.57 16 19 C -0.17 -2.03 4.59 -26.73 -0.12 -2.15 16 20 C 0.45 6.51 3.16 37.16 0.12 6.63 16 21 F -0.17 -3.01 15.18 2.25 0.03 -2.97 16 22 F -0.19 -2.83 16.71 2.25 0.04 -2.79 16 23 F -0.19 -2.66 17.32 2.25 0.04 -2.62 16 24 N -0.53 -14.66 7.89 -10.33 -0.08 -14.74 16 25 H 0.27 6.67 8.29 -40.82 -0.34 6.33 16 26 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 27 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.09 1.71 6.16 -52.49 -0.32 1.39 16 29 H 0.40 8.37 7.98 -40.82 -0.33 8.04 16 30 H 0.06 0.90 7.78 -51.93 -0.40 0.50 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.38 3.08 9.12 45.56 0.42 3.50 16 33 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.12 1.44 7.73 -51.93 -0.40 1.04 16 LS Contribution 303.58 15.07 4.57 4.57 Total: -1.00 -31.56 303.58 -6.23 -37.78 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -2.58 Total: 11.92 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -3.19 Total: -4.43 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.34 Total: -47.90 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.45 Total: -7.57 kcal Atomic # 9 Polarization: -8.50 SS G_CDS: 0.11 Total: -8.39 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.01 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.56 -6.23 -37.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320364717.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.710 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds