Wall clock time and date at job start Tue Mar 31 2020 06:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86802 * 119.99929 * 2 1 4 4 H 1.48503 * 109.46801 * 270.00088 * 3 2 1 5 5 H 1.48497 * 109.47331 * 29.99674 * 3 2 1 6 6 H 1.48504 * 109.47296 * 150.00113 * 3 2 1 7 7 C 1.40026 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99838 * 179.97438 * 7 2 1 9 9 C 1.41314 * 120.00004 * 0.02562 * 7 2 1 10 10 C 1.40585 * 119.78354 * 180.02562 * 9 7 2 11 11 C 1.38354 * 119.14878 * 179.97438 * 10 9 7 12 12 C 1.38643 * 118.67655 * 359.74728 * 11 10 9 13 13 C 1.39750 * 119.49205 * 0.48237 * 12 11 10 14 14 N 1.38822 * 119.58610 * 179.79044 * 13 12 11 15 15 C 1.46508 * 119.99737 * 359.72282 * 14 13 12 16 16 H 1.08990 * 109.47040 * 34.99980 * 15 14 13 17 17 C 1.53002 * 109.46786 * 275.00142 * 15 14 13 18 18 O 1.42902 * 109.47161 * 295.00040 * 17 15 14 19 19 C 1.52997 * 109.47112 * 155.00225 * 15 14 13 20 20 C 1.52997 * 109.47232 * 294.99785 * 19 15 14 21 21 F 1.39905 * 109.47157 * 59.99991 * 20 19 15 22 22 F 1.39900 * 109.47010 * 300.00382 * 20 19 15 23 23 F 1.39897 * 109.47422 * 180.02562 * 20 19 15 24 24 N 1.31984 * 120.83318 * 359.50578 * 13 12 11 25 25 H 0.97001 * 119.99501 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.43076 * 359.97438 * 10 9 7 27 27 H 1.07993 * 120.65883 * 180.02562 * 11 10 9 28 28 H 1.07999 * 120.25335 * 180.26729 * 12 11 10 29 29 H 0.96998 * 120.00615 * 179.72402 * 14 13 12 30 30 H 1.08996 * 109.47544 * 54.99876 * 17 15 14 31 31 H 1.09003 * 109.46980 * 175.00488 * 17 15 14 32 32 H 0.96698 * 113.99829 * 180.02562 * 18 17 15 33 33 H 1.09002 * 109.47045 * 174.99727 * 19 15 14 34 34 H 1.09001 * 109.46922 * 54.99935 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4389 2.6527 0.6999 6 1 3.5391 1.4402 0.7000 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2126 0.0001 9 6 1.3011 -2.4365 0.0005 10 6 2.0086 -3.6513 0.0016 11 6 1.3036 -4.8418 0.0022 12 6 -0.0820 -4.7944 0.0070 13 6 -0.7281 -3.5552 0.0009 14 7 -2.1154 -3.5055 0.0012 15 6 -2.8929 -4.7473 0.0018 16 1 -2.3720 -5.5017 0.5913 17 6 -3.0572 -5.2467 -1.4350 18 8 -3.8406 -4.3106 -2.1780 19 6 -4.2714 -4.4857 0.6117 20 6 -4.1135 -4.1064 2.0855 21 9 -3.3311 -2.9511 2.1885 22 9 -3.4908 -5.1540 2.7725 23 9 -5.3740 -3.8677 2.6433 24 7 -0.0359 -2.4314 0.0004 25 1 -0.4849 0.8401 0.0004 26 1 3.0885 -3.6554 0.0021 27 1 1.8223 -5.7890 0.0034 28 1 -0.6577 -5.7081 0.0118 29 1 -2.5701 -2.6487 0.0011 30 1 -2.0762 -5.3484 -1.8989 31 1 -3.5580 -6.2149 -1.4281 32 1 -3.9860 -4.5635 -3.0999 33 1 -4.8810 -5.3857 0.5315 34 1 -4.7565 -3.6694 0.0764 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320364717.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:09 Heat of formation + Delta-G solvation = -186.426428 kcal Electronic energy + Delta-G solvation = -23800.630699 eV Core-core repulsion = 19703.586415 eV Total energy + Delta-G solvation = -4097.044284 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.04450 -48.56606 -48.51490 -40.28867 -38.62956 -36.34230 -35.23028 -33.22393 -32.13336 -30.21045 -28.64408 -27.27352 -24.62385 -23.45571 -22.95483 -21.54568 -19.54889 -19.36605 -19.16112 -18.88650 -17.95877 -17.81501 -16.66791 -16.47600 -16.18040 -15.63112 -15.43222 -15.38036 -15.19664 -14.96388 -14.81349 -14.70262 -14.65140 -14.43778 -14.16016 -13.75362 -13.40564 -13.22885 -12.90321 -12.76533 -12.66482 -12.49173 -12.29956 -12.06119 -11.71997 -11.29874 -10.87207 -10.63821 -9.81416 -9.39918 -8.26667 -8.19988 -6.45827 1.08289 1.38640 1.40854 1.54226 1.58870 1.84813 2.25338 2.53521 2.89304 2.94342 3.00807 3.16996 3.44118 3.83705 4.04298 4.17214 4.29098 4.41563 4.45817 4.53571 4.70833 4.81793 4.91797 5.00581 5.03054 5.15786 5.38639 5.73697 5.98816 6.09271 6.24197 6.57326 6.84720 6.92978 6.98105 7.23724 8.38449 8.53926 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.016845 B = 0.005360 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.773926 B = 5222.862164 C = 5737.348466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.025 3.975 3 Si 0.984 3.016 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.473 4.473 8 H 0.085 0.915 9 C 0.259 3.741 10 C -0.347 4.347 11 C -0.029 4.029 12 C -0.367 4.367 13 C 0.400 3.600 14 N -0.721 5.721 15 C 0.156 3.844 16 H 0.101 0.899 17 C 0.070 3.930 18 O -0.583 6.583 19 C -0.153 4.153 20 C 0.445 3.555 21 F -0.194 7.194 22 F -0.191 7.191 23 F -0.189 7.189 24 N -0.565 5.565 25 H 0.274 0.726 26 H 0.100 0.900 27 H 0.130 0.870 28 H 0.123 0.877 29 H 0.392 0.608 30 H 0.039 0.961 31 H 0.093 0.907 32 H 0.395 0.605 33 H 0.159 0.841 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.939 -9.505 -1.512 14.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.196 4.196 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.181 1.181 7 C -0.505 4.505 8 H 0.103 0.897 9 C 0.131 3.869 10 C -0.370 4.370 11 C -0.053 4.053 12 C -0.393 4.393 13 C 0.160 3.840 14 N -0.356 5.356 15 C 0.050 3.950 16 H 0.118 0.882 17 C -0.009 4.009 18 O -0.391 6.391 19 C -0.191 4.191 20 C 0.391 3.609 21 F -0.175 7.175 22 F -0.173 7.173 23 F -0.170 7.170 24 N -0.287 5.287 25 H 0.085 0.915 26 H 0.118 0.882 27 H 0.147 0.853 28 H 0.141 0.859 29 H 0.227 0.773 30 H 0.057 0.943 31 H 0.111 0.889 32 H 0.244 0.756 33 H 0.176 0.824 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.588 -8.479 -0.897 14.387 hybrid contribution 0.875 0.111 -0.145 0.894 sum -10.713 -8.368 -1.042 13.634 Atomic orbital electron populations 1.70267 1.08710 1.28523 1.29710 1.26951 0.95725 1.04318 0.92649 0.85189 0.78991 0.75995 0.79350 1.18732 1.19485 1.18056 1.19922 0.94520 0.90581 1.45442 0.89708 1.18680 0.87747 0.93186 0.87254 1.21680 0.98900 0.93895 1.22498 1.21007 0.93849 0.97044 0.93444 1.20972 0.94896 0.96025 1.27409 1.18909 0.85792 0.90247 0.89091 1.44325 1.01405 1.07547 1.82345 1.21081 0.89814 0.87844 0.96294 0.88165 1.22625 0.95039 0.92393 0.90842 1.86434 1.73870 1.50419 1.28338 1.23110 1.00247 1.09052 0.86728 1.21023 0.73094 0.74436 0.92347 1.93245 1.75652 1.51671 1.96945 1.93154 1.83291 1.57993 1.82825 1.93162 1.41300 1.94546 1.87995 1.68171 1.07875 1.26409 1.26256 0.91505 0.88221 0.85261 0.85874 0.77335 0.94298 0.88944 0.75594 0.82366 0.85946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -42.04 11.46 21.84 0.25 -41.79 16 2 C 0.03 1.35 5.50 85.29 0.47 1.82 16 3 Si 0.98 39.95 29.56 68.60 2.03 41.98 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 6 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 7 C -0.47 -26.95 9.14 23.46 0.21 -26.74 16 8 H 0.08 4.55 7.85 -2.91 -0.02 4.53 16 9 C 0.26 15.07 6.55 40.19 0.26 15.34 16 10 C -0.35 -17.97 9.83 22.87 0.22 -17.74 16 11 C -0.03 -1.32 10.15 22.39 0.23 -1.09 16 12 C -0.37 -16.09 8.86 22.73 0.20 -15.88 16 13 C 0.40 19.47 7.63 133.40 1.02 20.49 16 14 N -0.72 -28.30 3.92 -324.47 -1.27 -29.57 16 15 C 0.16 4.20 1.99 44.99 0.09 4.29 16 16 H 0.10 2.70 5.94 -2.39 -0.01 2.69 16 17 C 0.07 1.54 6.77 71.98 0.49 2.03 16 18 O -0.58 -13.08 12.83 -148.98 -1.91 -14.99 16 19 C -0.15 -3.24 4.59 30.59 0.14 -3.10 16 20 C 0.44 12.21 3.16 71.98 0.23 12.44 16 21 F -0.19 -7.08 15.18 44.97 0.68 -6.40 16 22 F -0.19 -5.48 16.71 44.97 0.75 -4.73 16 23 F -0.19 -4.89 17.32 44.97 0.78 -4.11 16 24 N -0.56 -32.44 7.89 -186.60 -1.47 -33.91 16 25 H 0.27 14.00 8.29 -92.71 -0.77 13.23 16 26 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 27 H 0.13 4.73 8.06 -2.91 -0.02 4.70 16 28 H 0.12 4.42 6.16 -2.91 -0.02 4.40 16 29 H 0.39 16.64 7.98 -92.71 -0.74 15.90 16 30 H 0.04 1.04 7.78 -2.39 -0.02 1.02 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.39 5.37 9.12 -74.06 -0.68 4.69 16 33 H 0.16 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.12 2.63 7.73 -2.39 -0.02 2.61 16 Total: -1.00 -71.73 303.58 3.16 -68.57 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: -0.24 Total: 33.09 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 3.56 Total: -8.15 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -2.49 Total: -105.27 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -1.91 Total: -14.99 kcal Atomic # 9 Polarization: -17.44 SS G_CDS: 2.21 Total: -15.23 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -71.73 3.16 -68.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320364717.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.852 kcal (2) G-P(sol) polarization free energy of solvation -71.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds