Wall clock time and date at job start Tue Mar 31 2020 08:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99657 * 2 1 4 4 H 1.48493 * 109.46791 * 269.99720 * 3 2 1 5 5 H 1.48501 * 109.46942 * 29.99689 * 3 2 1 6 6 H 1.48495 * 109.46695 * 149.99739 * 3 2 1 7 7 C 1.37877 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00033 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99714 * 180.02562 * 7 2 1 10 10 N 1.46507 * 109.46832 * 180.02562 * 9 7 2 11 11 C 1.34773 * 119.99983 * 179.97438 * 10 9 7 12 12 O 1.21587 * 120.00039 * 0.02562 * 11 10 9 13 13 C 1.47571 * 120.00168 * 179.97438 * 11 10 9 14 14 C 1.39548 * 120.67753 * 0.02562 * 13 11 10 15 15 C 1.39940 * 118.14202 * 179.97438 * 14 13 11 16 16 C 1.39860 * 119.88770 * 359.78828 * 15 14 13 17 17 N 1.32137 * 119.96372 * 0.35117 * 16 15 14 18 18 C 1.32190 * 122.36570 * 359.80008 * 17 16 15 19 19 O 1.35232 * 119.50057 * 179.97438 * 18 17 16 20 20 C 1.50621 * 121.28660 * 180.72605 * 16 15 14 21 21 C 1.52595 * 111.23141 * 337.05800 * 20 16 15 22 22 C 1.53438 * 109.42260 * 54.86143 * 21 20 16 23 23 C 1.47259 * 119.75552 * 179.76810 * 15 14 13 24 24 O 1.21279 * 121.17520 * 348.62303 * 23 15 14 25 25 H 0.97001 * 120.00155 * 0.02562 * 1 2 3 26 26 H 1.08991 * 109.47437 * 60.00312 * 9 7 2 27 27 H 1.09000 * 109.47233 * 299.99821 * 9 7 2 28 28 H 0.97000 * 119.99756 * 0.02562 * 10 9 7 29 29 H 1.08003 * 120.92954 * 359.97132 * 14 13 11 30 30 H 0.96698 * 113.99977 * 269.97705 * 19 18 17 31 31 H 1.09001 * 109.13379 * 216.60512 * 20 16 15 32 32 H 1.08996 * 109.12512 * 97.50628 * 20 16 15 33 33 H 1.09002 * 109.48353 * 294.87265 * 21 20 16 34 34 H 1.08999 * 109.47638 * 174.84796 * 21 20 16 35 35 H 1.09003 * 109.87960 * 55.43216 * 22 21 20 36 36 H 1.08999 * 109.88112 * 176.51363 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 4.0000 -2.5752 0.0010 11 6 5.3250 -2.8214 0.0009 12 8 6.1151 -1.8972 0.0014 13 6 5.8170 -4.2127 0.0014 14 6 4.9228 -5.2841 0.0013 15 6 5.4473 -6.5815 0.0012 16 6 6.8327 -6.7732 -0.0033 17 7 7.6433 -5.7297 -0.0005 18 6 7.1957 -4.4859 0.0027 19 8 8.0777 -3.4607 0.0060 20 6 7.4311 -8.1553 -0.0199 21 6 6.4495 -9.1890 0.5247 22 6 5.1330 -9.1049 -0.2590 23 6 4.5360 -7.7382 0.0064 24 8 3.3492 -7.6014 0.2154 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6800 0.8911 27 1 3.8752 -0.6803 -0.8888 28 1 3.3696 -3.3124 0.0002 29 1 3.8559 -5.1166 0.0014 30 1 8.3335 -3.1648 0.8904 31 1 8.3327 -8.1617 0.5926 32 1 7.6946 -8.4181 -1.0443 33 1 6.2584 -8.9888 1.5790 34 1 6.8745 -10.1867 0.4153 35 1 5.3278 -9.2237 -1.3248 36 1 4.4482 -9.8812 0.0824 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320934292.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:07 Heat of formation + Delta-G solvation = -83.399548 kcal Electronic energy + Delta-G solvation = -22375.517185 eV Core-core repulsion = 18824.797222 eV Total energy + Delta-G solvation = -3550.719963 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.34481 -39.58849 -38.52793 -37.34492 -35.59517 -34.40254 -33.16033 -32.25288 -30.43310 -29.12728 -27.80539 -24.75537 -24.06698 -22.40021 -22.07299 -20.72900 -19.62999 -18.74437 -17.77394 -17.46741 -16.58993 -16.30379 -15.71473 -15.32578 -14.99608 -14.92733 -14.64130 -14.47099 -14.27310 -14.01367 -13.76802 -13.48742 -12.96469 -12.51243 -12.40272 -12.28639 -12.18865 -11.92758 -11.54161 -11.49037 -11.06770 -10.80947 -10.35251 -10.15968 -10.00616 -9.78269 -9.53040 -9.32355 -9.09464 -8.81538 -8.25417 -6.23849 -4.27101 0.07985 0.61748 1.96371 2.94609 3.18139 3.24980 3.31794 3.39208 3.60303 3.68266 3.78365 4.02455 4.24319 4.30735 4.43646 4.47213 4.57165 4.78011 4.91058 4.98651 5.11078 5.15777 5.21932 5.27828 5.38094 5.50479 5.62803 5.68097 5.75952 6.03719 6.72257 7.00119 7.06714 7.16934 7.30864 7.33227 7.54921 8.03701 8.40514 8.66653 8.78517 9.34898 10.87958 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.021657 B = 0.004092 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.598039 B = 6841.282843 C = 8081.928965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.547 4.547 8 H 0.080 0.920 9 C 0.221 3.779 10 N -0.697 5.697 11 C 0.548 3.452 12 O -0.534 6.534 13 C -0.208 4.208 14 C 0.027 3.973 15 C -0.244 4.244 16 C 0.223 3.777 17 N -0.520 5.520 18 C 0.403 3.597 19 O -0.456 6.456 20 C -0.078 4.078 21 C -0.114 4.114 22 C -0.164 4.164 23 C 0.405 3.595 24 O -0.443 6.443 25 H 0.268 0.732 26 H 0.029 0.971 27 H 0.024 0.976 28 H 0.395 0.605 29 H 0.157 0.843 30 H 0.410 0.590 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.796 -19.722 1.258 24.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.585 4.585 8 H 0.098 0.902 9 C 0.100 3.900 10 N -0.346 5.346 11 C 0.332 3.668 12 O -0.413 6.413 13 C -0.215 4.215 14 C 0.002 3.998 15 C -0.248 4.248 16 C 0.083 3.917 17 N -0.240 5.240 18 C 0.222 3.778 19 O -0.264 6.264 20 C -0.116 4.116 21 C -0.151 4.151 22 C -0.201 4.201 23 C 0.281 3.719 24 O -0.317 6.317 25 H 0.078 0.922 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.230 0.770 29 H 0.174 0.826 30 H 0.271 0.729 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.124 0.876 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 15.396 -18.894 0.787 24.385 hybrid contribution -0.749 0.921 0.361 1.241 sum 14.647 -17.973 1.148 23.214 Atomic orbital electron populations 1.69880 1.06217 1.27494 1.49117 1.24787 0.94794 0.99157 0.93769 0.86815 0.80551 0.83206 0.79114 1.19780 1.20832 1.18476 1.21072 0.88356 0.95365 1.53708 0.90164 1.19566 0.95428 0.77959 0.97090 1.46164 1.05174 1.11514 1.71728 1.17728 0.83558 0.86917 0.78630 1.90774 1.55259 1.44731 1.50504 1.21408 0.94134 0.95951 1.09973 1.22092 1.01131 0.90194 0.86408 1.21116 0.95429 0.95661 1.12556 1.21486 0.88051 0.94306 0.87820 1.67122 1.40750 0.98681 1.17444 1.19289 0.85716 0.85470 0.87289 1.84638 1.61886 1.45991 1.33879 1.20519 0.99363 0.87666 1.04048 1.21533 0.93630 0.99708 1.00279 1.22345 0.98710 0.95838 1.03250 1.22474 0.87529 0.90071 0.71836 1.90605 1.17346 1.87958 1.35808 0.92184 0.95333 0.95777 0.76985 0.82587 0.72914 0.88332 0.88311 0.90759 0.89206 0.87622 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.96 55.43 0.77 -25.69 16 2 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 3 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.55 -15.05 9.83 -34.44 -0.34 -15.39 16 8 H 0.08 2.30 7.84 -52.49 -0.41 1.89 16 9 C 0.22 5.43 4.50 -5.19 -0.02 5.41 16 10 N -0.70 -14.38 5.50 -62.52 -0.34 -14.72 16 11 C 0.55 10.72 7.77 -12.46 -0.10 10.62 16 12 O -0.53 -11.91 15.19 -16.50 -0.25 -12.16 16 13 C -0.21 -3.27 5.90 -104.73 -0.62 -3.89 16 14 C 0.03 0.38 9.17 -38.46 -0.35 0.03 16 15 C -0.24 -2.86 5.82 -104.99 -0.61 -3.47 16 16 C 0.22 2.34 6.70 -81.89 -0.55 1.79 16 17 N -0.52 -6.69 10.23 -8.81 -0.09 -6.78 16 18 C 0.40 5.93 7.75 -16.53 -0.13 5.80 16 19 O -0.46 -6.67 11.63 -39.19 -0.46 -7.12 16 20 C -0.08 -0.48 5.91 -28.13 -0.17 -0.65 16 21 C -0.11 -0.52 5.89 -26.71 -0.16 -0.68 16 22 C -0.16 -1.01 6.19 -27.27 -0.17 -1.17 16 23 C 0.40 4.33 6.88 -30.26 -0.21 4.13 16 24 O -0.44 -6.33 17.29 5.56 0.10 -6.23 16 25 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.03 0.73 7.20 -51.93 -0.37 0.36 16 27 H 0.02 0.62 7.57 -51.93 -0.39 0.22 16 28 H 0.40 7.32 6.43 -40.82 -0.26 7.06 16 29 H 0.16 2.12 6.23 -52.48 -0.33 1.79 16 30 H 0.41 4.21 9.06 45.56 0.41 4.62 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 311.29 15.07 4.69 4.69 Total: -1.00 -35.09 311.29 -6.82 -41.91 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -3.06 Total: 4.76 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -3.51 Total: 4.67 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: 0.34 Total: -47.20 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.61 Total: -25.51 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -35.09 -6.82 -41.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320934292.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.489 kcal (2) G-P(sol) polarization free energy of solvation -35.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds