Wall clock time and date at job start Tue Mar 31 2020 08:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99657 * 2 1 4 4 H 1.48493 * 109.46791 * 269.99720 * 3 2 1 5 5 H 1.48501 * 109.46942 * 29.99689 * 3 2 1 6 6 H 1.48495 * 109.46695 * 149.99739 * 3 2 1 7 7 C 1.37877 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00033 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99714 * 180.02562 * 7 2 1 10 10 N 1.46507 * 109.46832 * 180.02562 * 9 7 2 11 11 C 1.34773 * 119.99983 * 179.97438 * 10 9 7 12 12 O 1.21587 * 120.00039 * 0.02562 * 11 10 9 13 13 C 1.47571 * 120.00168 * 179.97438 * 11 10 9 14 14 C 1.39548 * 120.67753 * 0.02562 * 13 11 10 15 15 C 1.39940 * 118.14202 * 179.97438 * 14 13 11 16 16 C 1.39860 * 119.88770 * 359.78828 * 15 14 13 17 17 N 1.32137 * 119.96372 * 0.35117 * 16 15 14 18 18 C 1.32190 * 122.36570 * 359.80008 * 17 16 15 19 19 O 1.35232 * 119.50057 * 179.97438 * 18 17 16 20 20 C 1.50621 * 121.28660 * 180.72605 * 16 15 14 21 21 C 1.52595 * 111.23141 * 337.05800 * 20 16 15 22 22 C 1.53438 * 109.42260 * 54.86143 * 21 20 16 23 23 C 1.47259 * 119.75552 * 179.76810 * 15 14 13 24 24 O 1.21279 * 121.17520 * 348.62303 * 23 15 14 25 25 H 0.97001 * 120.00155 * 0.02562 * 1 2 3 26 26 H 1.08991 * 109.47437 * 60.00312 * 9 7 2 27 27 H 1.09000 * 109.47233 * 299.99821 * 9 7 2 28 28 H 0.97000 * 119.99756 * 0.02562 * 10 9 7 29 29 H 1.08003 * 120.92954 * 359.97132 * 14 13 11 30 30 H 0.96698 * 113.99977 * 269.97705 * 19 18 17 31 31 H 1.09001 * 109.13379 * 216.60512 * 20 16 15 32 32 H 1.08996 * 109.12512 * 97.50628 * 20 16 15 33 33 H 1.09002 * 109.48353 * 294.87265 * 21 20 16 34 34 H 1.08999 * 109.47638 * 174.84796 * 21 20 16 35 35 H 1.09003 * 109.87960 * 55.43216 * 22 21 20 36 36 H 1.08999 * 109.88112 * 176.51363 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 4.0000 -2.5752 0.0010 11 6 5.3250 -2.8214 0.0009 12 8 6.1151 -1.8972 0.0014 13 6 5.8170 -4.2127 0.0014 14 6 4.9228 -5.2841 0.0013 15 6 5.4473 -6.5815 0.0012 16 6 6.8327 -6.7732 -0.0033 17 7 7.6433 -5.7297 -0.0005 18 6 7.1957 -4.4859 0.0027 19 8 8.0777 -3.4607 0.0060 20 6 7.4311 -8.1553 -0.0199 21 6 6.4495 -9.1890 0.5247 22 6 5.1330 -9.1049 -0.2590 23 6 4.5360 -7.7382 0.0064 24 8 3.3492 -7.6014 0.2154 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6800 0.8911 27 1 3.8752 -0.6803 -0.8888 28 1 3.3696 -3.3124 0.0002 29 1 3.8559 -5.1166 0.0014 30 1 8.3335 -3.1648 0.8904 31 1 8.3327 -8.1617 0.5926 32 1 7.6946 -8.4181 -1.0443 33 1 6.2584 -8.9888 1.5790 34 1 6.8745 -10.1867 0.4153 35 1 5.3278 -9.2237 -1.3248 36 1 4.4482 -9.8812 0.0824 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320934292.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:03 Heat of formation + Delta-G solvation = -111.834253 kcal Electronic energy + Delta-G solvation = -22376.750206 eV Core-core repulsion = 18824.797222 eV Total energy + Delta-G solvation = -3551.952985 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -42.36811 -40.74288 -39.86008 -38.37794 -36.39716 -36.16869 -34.65139 -33.92016 -31.44732 -30.18302 -29.34030 -25.81144 -25.14794 -24.09101 -22.79478 -22.16629 -20.80552 -19.93116 -19.17700 -18.49680 -18.22578 -17.29522 -16.94341 -16.86003 -16.25901 -16.09110 -15.85827 -15.78366 -15.37893 -15.00637 -14.81889 -14.61650 -14.26304 -14.21132 -14.18019 -13.18844 -13.13203 -12.97135 -12.84738 -12.73608 -12.03811 -11.99619 -11.95265 -11.73251 -11.48204 -11.21639 -10.95921 -10.74951 -10.63405 -10.23481 -9.96246 -8.43434 -6.52145 -0.91839 -0.47816 1.04397 1.31831 1.33256 1.46036 1.74439 2.06285 2.25009 2.27410 2.51543 2.83614 2.91684 3.18619 3.35460 3.49796 3.74225 3.89813 3.93446 4.06580 4.20688 4.44371 4.46430 4.67474 4.69822 4.77144 4.92069 4.95495 4.99515 5.17029 5.17842 5.25013 5.32788 5.33298 6.00706 6.30240 6.38695 6.46260 6.57091 6.64501 7.04858 7.19618 8.71458 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.021657 B = 0.004092 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.598039 B = 6841.282843 C = 8081.928965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.027 3.973 3 Si 0.941 3.059 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.553 4.553 8 H 0.055 0.945 9 C 0.234 3.766 10 N -0.701 5.701 11 C 0.551 3.449 12 O -0.564 6.564 13 C -0.232 4.232 14 C 0.026 3.974 15 C -0.252 4.252 16 C 0.240 3.760 17 N -0.524 5.524 18 C 0.404 3.596 19 O -0.471 6.471 20 C -0.078 4.078 21 C -0.106 4.106 22 C -0.156 4.156 23 C 0.405 3.595 24 O -0.489 6.489 25 H 0.274 0.726 26 H 0.021 0.979 27 H 0.017 0.983 28 H 0.404 0.596 29 H 0.149 0.851 30 H 0.425 0.575 31 H 0.114 0.886 32 H 0.125 0.875 33 H 0.069 0.931 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.096 -22.100 1.084 27.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.173 4.173 3 Si 0.764 3.236 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.591 4.591 8 H 0.073 0.927 9 C 0.110 3.890 10 N -0.351 5.351 11 C 0.338 3.662 12 O -0.445 6.445 13 C -0.239 4.239 14 C 0.000 4.000 15 C -0.255 4.255 16 C 0.101 3.899 17 N -0.244 5.244 18 C 0.224 3.776 19 O -0.282 6.282 20 C -0.115 4.115 21 C -0.144 4.144 22 C -0.193 4.193 23 C 0.284 3.716 24 O -0.366 6.366 25 H 0.083 0.917 26 H 0.039 0.961 27 H 0.035 0.965 28 H 0.240 0.760 29 H 0.167 0.833 30 H 0.289 0.711 31 H 0.132 0.868 32 H 0.143 0.857 33 H 0.088 0.912 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 17.717 -21.308 0.624 27.718 hybrid contribution -1.440 1.496 0.415 2.117 sum 16.277 -19.812 1.039 25.662 Atomic orbital electron populations 1.69988 1.07798 1.28779 1.50300 1.25630 0.95579 1.02810 0.93302 0.85810 0.79322 0.78931 0.79567 1.18922 1.19633 1.18090 1.21263 0.89890 0.94638 1.53324 0.92662 1.19184 0.93441 0.80061 0.96266 1.46001 1.06172 1.10300 1.72606 1.18180 0.82555 0.88413 0.77057 1.90738 1.55740 1.46231 1.51822 1.20986 0.95086 0.93869 1.13958 1.22118 1.00660 0.91078 0.86127 1.21432 0.96617 0.95198 1.12297 1.22375 0.87405 0.95857 0.84241 1.67321 1.40730 0.98213 1.18129 1.19345 0.85163 0.86279 0.86831 1.84577 1.61756 1.46406 1.35421 1.20807 0.99983 0.84724 1.06026 1.21587 0.92213 1.01052 0.99500 1.22441 0.99440 0.92377 1.05034 1.23209 0.86652 0.91657 0.70079 1.90600 1.19179 1.88686 1.38087 0.91710 0.96078 0.96519 0.76047 0.83340 0.71140 0.86762 0.85706 0.91220 0.85387 0.85221 0.87054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.42 13.96 21.45 0.30 -56.12 16 2 C 0.03 1.57 5.47 84.65 0.46 2.03 16 3 Si 0.94 44.37 27.47 68.60 1.88 46.25 16 4 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.26 -11.88 6.54 99.48 0.65 -11.23 16 7 C -0.55 -31.40 9.83 25.60 0.25 -31.15 16 8 H 0.06 3.33 7.84 -2.91 -0.02 3.30 16 9 C 0.23 11.76 4.50 85.63 0.38 12.14 16 10 N -0.70 -30.04 5.50 -469.97 -2.59 -32.63 16 11 C 0.55 22.23 7.77 86.71 0.67 22.91 16 12 O -0.56 -25.75 15.19 16.85 0.26 -25.49 16 13 C -0.23 -7.44 5.90 -19.93 -0.12 -7.56 16 14 C 0.03 0.72 9.17 23.00 0.21 0.94 16 15 C -0.25 -5.59 5.82 -20.10 -0.12 -5.71 16 16 C 0.24 4.42 6.70 42.88 0.29 4.70 16 17 N -0.52 -12.48 10.23 -294.92 -3.02 -15.50 16 18 C 0.40 11.72 7.75 85.20 0.66 12.38 16 19 O -0.47 -13.68 11.63 -64.31 -0.75 -14.43 16 20 C -0.08 -0.59 5.91 29.69 0.18 -0.41 16 21 C -0.11 -0.44 5.89 30.61 0.18 -0.26 16 22 C -0.16 -1.30 6.19 30.24 0.19 -1.11 16 23 C 0.40 8.05 6.88 28.31 0.19 8.25 16 24 O -0.49 -13.95 17.29 -3.02 -0.05 -14.01 16 25 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 26 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 27 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 28 H 0.40 15.80 6.43 -92.71 -0.60 15.20 16 29 H 0.15 4.30 6.23 -2.91 -0.02 4.28 16 30 H 0.42 8.71 9.06 -74.06 -0.67 8.04 16 31 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.13 0.46 8.14 -2.39 -0.02 0.45 16 33 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.13 -0.27 8.14 -2.39 -0.02 -0.29 16 35 H 0.13 0.55 8.14 -2.39 -0.02 0.54 16 36 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -78.35 311.29 -0.69 -79.05 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -0.17 Total: 15.72 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: 3.44 Total: 17.15 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -5.30 Total: -104.24 kcal Atomic # 8 Polarization: -53.38 SS G_CDS: -0.54 Total: -53.93 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.88 Total: 46.25 kcal Total: -78.35 -0.69 -79.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320934292.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.787 kcal (2) G-P(sol) polarization free energy of solvation -78.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds