Wall clock time and date at job start Tue Mar 31 2020 06:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00071 * 2 1 4 4 H 1.48494 * 109.47183 * 270.00136 * 3 2 1 5 5 H 1.48502 * 109.46923 * 30.00259 * 3 2 1 6 6 H 1.48501 * 109.46875 * 150.00129 * 3 2 1 7 7 C 1.37879 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00181 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99835 * 0.02562 * 7 2 1 10 10 C 1.53117 * 109.52015 * 180.02562 * 9 7 2 11 11 C 1.53037 * 109.27639 * 177.56033 * 10 9 7 12 12 N 1.46849 * 109.52114 * 300.81539 * 11 10 9 13 13 C 1.38390 * 110.99721 * 185.84215 * 12 11 10 14 14 N 1.32429 * 120.48517 * 0.02562 * 13 12 11 15 15 C 1.32034 * 121.40504 * 179.97438 * 14 13 12 16 16 N 1.31435 * 121.94673 * 0.02562 * 15 14 13 17 17 C 1.33419 * 120.90912 * 359.97438 * 16 15 14 18 18 S 1.76038 * 132.09362 * 180.02562 * 17 16 15 19 19 C 1.75873 * 90.37084 * 179.97438 * 18 17 16 20 20 N 1.28104 * 110.41554 * 359.97438 * 19 18 17 21 21 C 1.34356 * 118.01824 * 0.02562 * 20 19 18 22 22 C 1.46847 * 111.19632 * 61.74546 * 12 11 10 23 23 C 1.53043 * 109.52068 * 298.25437 * 22 12 11 24 24 H 0.96999 * 120.00155 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.57186 * 59.84193 * 9 7 2 26 26 H 1.08993 * 109.50824 * 57.61575 * 10 9 7 27 27 H 1.09005 * 109.50545 * 297.49572 * 10 9 7 28 28 H 1.09003 * 109.46206 * 180.79931 * 11 10 9 29 29 H 1.08997 * 109.46231 * 60.83377 * 11 10 9 30 30 H 1.08003 * 119.02957 * 180.02562 * 15 14 13 31 31 H 1.07999 * 124.79213 * 180.27309 * 19 18 17 32 32 H 1.09001 * 109.46215 * 58.27518 * 22 12 11 33 33 H 1.08996 * 109.46256 * 178.23988 * 22 12 11 34 34 H 1.08997 * 109.50327 * 299.24185 * 23 22 12 35 35 H 1.08999 * 109.49714 * 179.12140 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2449 -3.6639 -0.0015 11 6 1.4751 -4.9851 0.0589 12 7 0.6534 -5.0192 1.2755 13 6 0.0446 -6.2525 1.4283 14 7 0.2406 -7.2134 0.5384 15 6 -0.3306 -8.3968 0.6665 16 7 -1.1200 -8.6822 1.6779 17 6 -1.3763 -7.7769 2.6240 18 16 -2.3666 -7.8376 4.0780 19 6 -1.9338 -6.1754 4.4560 20 7 -1.1460 -5.7045 3.5623 21 6 -0.7983 -6.5062 2.5417 22 6 -0.3404 -3.9380 1.2755 23 6 0.3754 -2.5855 1.2515 24 1 -0.4850 0.8400 0.0004 25 1 0.6219 -2.5568 -0.8900 26 1 2.8991 -3.5839 0.8667 27 1 2.8428 -3.6323 -0.9124 28 1 2.1804 -5.8161 0.0735 29 1 0.8314 -5.0707 -0.8166 30 1 -0.1438 -9.1528 -0.0819 31 1 -2.2792 -5.6304 5.3221 32 1 -0.9755 -4.0286 0.3943 33 1 -0.9536 -4.0085 2.1738 34 1 1.0002 -2.4886 2.1394 35 1 -0.3626 -1.7836 1.2357 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327660317.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:03 Heat of formation + Delta-G solvation = 89.831155 kcal Electronic energy + Delta-G solvation = -20658.705226 eV Core-core repulsion = 17590.542732 eV Total energy + Delta-G solvation = -3068.162494 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -41.54671 -38.59800 -38.00200 -34.67933 -32.73989 -31.50041 -30.03225 -29.78672 -26.17074 -25.80515 -23.87529 -22.73132 -22.00009 -21.72653 -18.90799 -18.80942 -17.77226 -17.31805 -16.41717 -15.68247 -15.56419 -15.10935 -14.57731 -14.26865 -14.11919 -13.74000 -13.13667 -12.97891 -12.68613 -12.58863 -12.21146 -11.70584 -11.45811 -11.39451 -11.06518 -10.86314 -10.56215 -10.37263 -10.14520 -9.94645 -9.74113 -9.45032 -9.20518 -9.08138 -9.01204 -8.79386 -8.35904 -8.07394 -6.02972 -4.08258 0.09845 0.79984 0.85825 1.43565 2.19389 3.29161 3.36094 3.38170 3.39654 3.60529 3.88206 4.02089 4.36858 4.41698 4.64941 4.83030 5.27624 5.48366 5.59480 5.68063 5.86867 5.93246 6.03379 6.19221 6.38572 6.42891 6.56703 6.71034 6.88945 6.95091 7.16378 7.28833 7.33504 7.46107 7.69401 7.93103 7.99342 8.04416 8.40148 8.94950 9.56760 11.03696 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.028315 B = 0.004174 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.645671 B = 6706.303978 C = 7452.622373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.511 4.511 8 H 0.056 0.944 9 C 0.044 3.956 10 C -0.111 4.111 11 C 0.065 3.935 12 N -0.451 5.451 13 C 0.443 3.557 14 N -0.563 5.563 15 C 0.348 3.652 16 N -0.521 5.521 17 C 0.084 3.916 18 S 0.094 5.906 19 C 0.080 3.920 20 N -0.417 5.417 21 C -0.046 4.046 22 C 0.060 3.940 23 C -0.104 4.104 24 H 0.260 0.740 25 H 0.025 0.975 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.207 0.793 31 H 0.216 0.784 32 H 0.039 0.961 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.908 -14.680 6.460 16.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.549 4.549 8 H 0.074 0.926 9 C 0.026 3.974 10 C -0.149 4.149 11 C -0.061 4.061 12 N -0.164 5.164 13 C 0.192 3.808 14 N -0.287 5.287 15 C 0.055 3.945 16 N -0.242 5.242 17 C -0.170 4.170 18 S 0.342 5.658 19 C -0.227 4.227 20 N -0.127 5.127 21 C -0.176 4.176 22 C -0.064 4.064 23 C -0.143 4.143 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.223 0.777 31 H 0.232 0.768 32 H 0.058 0.942 33 H 0.106 0.894 34 H 0.068 0.932 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.006 -15.219 6.747 17.384 hybrid contribution 0.477 1.476 -0.523 1.637 sum -4.528 -13.743 6.225 15.752 Atomic orbital electron populations 1.69847 1.05907 1.26495 1.50902 1.24963 0.94845 0.99088 0.95030 0.86606 0.79919 0.83494 0.78060 1.20752 1.21260 1.19914 1.21163 0.92946 0.90415 1.50372 0.92569 1.18757 0.92746 0.92006 0.93919 1.21798 0.98885 0.93138 1.01101 1.22251 0.95913 1.00155 0.87745 1.58550 1.20793 0.99791 1.37298 1.20185 0.82854 0.92158 0.85608 1.68388 1.29115 1.03307 1.27861 1.24874 0.85900 0.91559 0.92201 1.67895 1.19766 1.33163 1.03358 1.24663 0.99402 0.93118 0.99810 1.85019 1.47576 1.16733 1.16458 1.29187 0.97894 0.93888 1.01714 1.65987 1.11558 1.33902 1.01272 1.20114 1.06812 0.91896 0.98738 1.22719 0.91765 0.90632 1.01291 1.21770 1.00577 0.91962 0.99946 0.92975 0.95717 0.92279 0.92081 0.90634 0.93069 0.77705 0.76795 0.94218 0.89423 0.93186 0.87931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.80 11.37 55.43 0.63 -24.17 16 2 C 0.06 1.67 5.31 -17.82 -0.09 1.57 16 3 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.51 -13.66 8.56 -34.44 -0.29 -13.95 16 8 H 0.06 1.49 7.75 -52.48 -0.41 1.08 16 9 C 0.04 1.07 2.16 -91.65 -0.20 0.87 16 10 C -0.11 -2.28 5.32 -26.65 -0.14 -2.42 16 11 C 0.07 1.19 4.67 -3.83 -0.02 1.17 16 12 N -0.45 -8.50 4.68 -172.49 -0.81 -9.31 16 13 C 0.44 7.76 6.46 -154.51 -1.00 6.76 16 14 N -0.56 -8.92 8.78 -13.39 -0.12 -9.04 16 15 C 0.35 4.63 12.28 -92.26 -1.13 3.49 16 16 N -0.52 -7.56 10.46 -13.30 -0.14 -7.70 16 17 C 0.08 1.25 7.75 -16.26 -0.13 1.12 16 18 S 0.09 1.02 23.39 -107.50 -2.51 -1.50 16 19 C 0.08 0.86 12.41 51.21 0.64 1.49 16 20 N -0.42 -6.31 8.70 -11.43 -0.10 -6.40 16 21 C -0.05 -0.76 6.44 -84.75 -0.55 -1.30 16 22 C 0.06 1.18 5.24 -3.83 -0.02 1.16 16 23 C -0.10 -2.40 5.12 -26.65 -0.14 -2.53 16 24 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 25 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.08 1.29 7.72 -51.93 -0.40 0.89 16 29 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 30 H 0.21 1.81 8.06 -52.48 -0.42 1.38 16 31 H 0.22 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 1.68 5.86 -51.93 -0.30 1.38 16 34 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.10 2.61 6.17 -51.93 -0.32 2.29 16 LS Contribution 300.71 15.07 4.53 4.53 Total: -1.00 -30.17 300.71 -10.56 -40.73 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -3.95 Total: -0.49 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -3.07 Total: -2.56 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -0.53 Total: -56.62 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.51 Total: -1.50 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.17 -10.56 -40.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327660317.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.562 kcal (2) G-P(sol) polarization free energy of solvation -30.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds