Wall clock time and date at job start Tue Mar 31 2020 06:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00071 * 2 1 4 4 H 1.48494 * 109.47183 * 270.00136 * 3 2 1 5 5 H 1.48502 * 109.46923 * 30.00259 * 3 2 1 6 6 H 1.48501 * 109.46875 * 150.00129 * 3 2 1 7 7 C 1.37879 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00181 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99835 * 0.02562 * 7 2 1 10 10 C 1.53117 * 109.52015 * 180.02562 * 9 7 2 11 11 C 1.53037 * 109.27639 * 177.56033 * 10 9 7 12 12 N 1.46849 * 109.52114 * 300.81539 * 11 10 9 13 13 C 1.38390 * 110.99721 * 185.84215 * 12 11 10 14 14 N 1.32429 * 120.48517 * 0.02562 * 13 12 11 15 15 C 1.32034 * 121.40504 * 179.97438 * 14 13 12 16 16 N 1.31435 * 121.94673 * 0.02562 * 15 14 13 17 17 C 1.33419 * 120.90912 * 359.97438 * 16 15 14 18 18 S 1.76038 * 132.09362 * 180.02562 * 17 16 15 19 19 C 1.75873 * 90.37084 * 179.97438 * 18 17 16 20 20 N 1.28104 * 110.41554 * 359.97438 * 19 18 17 21 21 C 1.34356 * 118.01824 * 0.02562 * 20 19 18 22 22 C 1.46847 * 111.19632 * 61.74546 * 12 11 10 23 23 C 1.53043 * 109.52068 * 298.25437 * 22 12 11 24 24 H 0.96999 * 120.00155 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.57186 * 59.84193 * 9 7 2 26 26 H 1.08993 * 109.50824 * 57.61575 * 10 9 7 27 27 H 1.09005 * 109.50545 * 297.49572 * 10 9 7 28 28 H 1.09003 * 109.46206 * 180.79931 * 11 10 9 29 29 H 1.08997 * 109.46231 * 60.83377 * 11 10 9 30 30 H 1.08003 * 119.02957 * 180.02562 * 15 14 13 31 31 H 1.07999 * 124.79213 * 180.27309 * 19 18 17 32 32 H 1.09001 * 109.46215 * 58.27518 * 22 12 11 33 33 H 1.08996 * 109.46256 * 178.23988 * 22 12 11 34 34 H 1.08997 * 109.50327 * 299.24185 * 23 22 12 35 35 H 1.08999 * 109.49714 * 179.12140 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2449 -3.6639 -0.0015 11 6 1.4751 -4.9851 0.0589 12 7 0.6534 -5.0192 1.2755 13 6 0.0446 -6.2525 1.4283 14 7 0.2406 -7.2134 0.5384 15 6 -0.3306 -8.3968 0.6665 16 7 -1.1200 -8.6822 1.6779 17 6 -1.3763 -7.7769 2.6240 18 16 -2.3666 -7.8376 4.0780 19 6 -1.9338 -6.1754 4.4560 20 7 -1.1460 -5.7045 3.5623 21 6 -0.7983 -6.5062 2.5417 22 6 -0.3404 -3.9380 1.2755 23 6 0.3754 -2.5855 1.2515 24 1 -0.4850 0.8400 0.0004 25 1 0.6219 -2.5568 -0.8900 26 1 2.8991 -3.5839 0.8667 27 1 2.8428 -3.6323 -0.9124 28 1 2.1804 -5.8161 0.0735 29 1 0.8314 -5.0707 -0.8166 30 1 -0.1438 -9.1528 -0.0819 31 1 -2.2792 -5.6304 5.3221 32 1 -0.9755 -4.0286 0.3943 33 1 -0.9536 -4.0085 2.1738 34 1 1.0002 -2.4886 2.1394 35 1 -0.3626 -1.7836 1.2357 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327660317.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:01 Heat of formation + Delta-G solvation = 71.502962 kcal Electronic energy + Delta-G solvation = -20659.499996 eV Core-core repulsion = 17590.542732 eV Total energy + Delta-G solvation = -3068.957264 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.68604 -40.04508 -39.08098 -36.32412 -34.26752 -33.05013 -31.66962 -31.07293 -27.92535 -26.87994 -25.32818 -24.06294 -23.53980 -23.08129 -20.63168 -19.91583 -19.02755 -18.42256 -18.35351 -16.89583 -16.77309 -16.54896 -16.06941 -15.67108 -15.38089 -14.95956 -14.80669 -14.44935 -14.21954 -14.19387 -13.43526 -13.24331 -13.02734 -12.87511 -12.58952 -12.47174 -12.33393 -12.13737 -12.00491 -11.49476 -11.00296 -10.93390 -10.77805 -10.66686 -10.42399 -10.23528 -10.02069 -9.33506 -8.08929 -6.21679 -0.91565 -0.33863 -0.14675 0.49393 1.21034 1.42683 1.44023 1.53845 2.13694 2.44695 2.50910 2.83046 2.98738 3.19053 3.27120 3.51839 3.85735 4.08412 4.10797 4.23993 4.40931 4.55714 4.59499 4.74605 4.88171 4.92818 4.97299 5.09259 5.16386 5.40037 5.46692 5.61634 5.78288 5.84686 5.99003 6.09373 6.37232 6.40621 6.86987 6.88710 7.46440 8.96430 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.028315 B = 0.004174 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.645671 B = 6706.303978 C = 7452.622373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.015 3.985 3 Si 0.953 3.047 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.532 4.532 8 H 0.054 0.946 9 C 0.041 3.959 10 C -0.102 4.102 11 C 0.077 3.923 12 N -0.463 5.463 13 C 0.418 3.582 14 N -0.570 5.570 15 C 0.342 3.658 16 N -0.523 5.523 17 C 0.055 3.945 18 S 0.157 5.843 19 C 0.103 3.897 20 N -0.465 5.465 21 C -0.059 4.059 22 C 0.078 3.922 23 C -0.091 4.091 24 H 0.261 0.739 25 H -0.005 1.005 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.045 0.955 30 H 0.247 0.753 31 H 0.261 0.739 32 H 0.027 0.973 33 H 0.095 0.905 34 H 0.037 0.963 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.307 -16.071 7.747 18.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.183 4.183 3 Si 0.779 3.221 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.570 4.570 8 H 0.072 0.928 9 C 0.023 3.977 10 C -0.140 4.140 11 C -0.048 4.048 12 N -0.177 5.177 13 C 0.168 3.832 14 N -0.294 5.294 15 C 0.050 3.950 16 N -0.243 5.243 17 C -0.200 4.200 18 S 0.406 5.594 19 C -0.203 4.203 20 N -0.176 5.176 21 C -0.188 4.188 22 C -0.046 4.046 23 C -0.130 4.130 24 H 0.070 0.930 25 H 0.013 0.987 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.063 0.937 30 H 0.263 0.737 31 H 0.276 0.724 32 H 0.045 0.955 33 H 0.114 0.886 34 H 0.056 0.944 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.413 -16.660 8.039 19.274 hybrid contribution 0.462 1.786 -0.811 2.015 sum -4.951 -14.874 7.228 17.263 Atomic orbital electron populations 1.69983 1.07126 1.27183 1.51409 1.25705 0.95646 1.02264 0.94726 0.85633 0.78781 0.79556 0.78141 1.20262 1.20915 1.19386 1.21521 0.93090 0.91877 1.50489 0.92818 1.18715 0.93160 0.92789 0.93038 1.21640 0.98126 0.92973 1.01220 1.22074 0.95854 0.99158 0.87759 1.58493 1.21093 1.00320 1.37804 1.20210 0.84385 0.91768 0.86854 1.68365 1.29349 1.03903 1.27767 1.25682 0.85089 0.91472 0.92756 1.68010 1.19652 1.33078 1.03511 1.25246 1.00424 0.92884 1.01396 1.84850 1.45392 1.15826 1.13359 1.30086 0.94884 0.94169 1.01151 1.66022 1.14228 1.34925 1.02437 1.20220 1.06825 0.92843 0.98885 1.22342 0.91604 0.89654 1.01046 1.21469 0.99551 0.93184 0.98753 0.92977 0.98683 0.92735 0.91331 0.88998 0.93700 0.73723 0.72364 0.95470 0.88648 0.94377 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.38 11.37 21.45 0.24 -52.13 16 2 C 0.02 0.84 5.31 84.66 0.45 1.28 16 3 Si 0.95 43.35 29.54 68.60 2.03 45.37 16 4 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.53 -29.16 8.56 25.60 0.22 -28.94 16 8 H 0.05 2.89 7.75 -2.91 -0.02 2.87 16 9 C 0.04 2.08 2.16 -11.46 -0.02 2.06 16 10 C -0.10 -4.24 5.32 30.65 0.16 -4.08 16 11 C 0.08 2.86 4.67 86.33 0.40 3.26 16 12 N -0.46 -17.65 4.68 -699.63 -3.27 -20.92 16 13 C 0.42 14.56 6.46 133.96 0.87 15.43 16 14 N -0.57 -17.62 8.78 -196.26 -1.72 -19.34 16 15 C 0.34 8.52 12.28 180.92 2.22 10.74 16 16 N -0.52 -14.18 10.46 -196.01 -2.05 -16.23 16 17 C 0.05 1.53 7.75 84.84 0.66 2.18 16 18 S 0.16 2.89 23.39 -56.49 -1.32 1.57 16 19 C 0.10 1.89 12.41 130.79 1.62 3.51 16 20 N -0.46 -13.40 8.70 -190.03 -1.65 -15.05 16 21 C -0.06 -1.89 6.44 40.06 0.26 -1.63 16 22 C 0.08 3.21 5.24 86.33 0.45 3.66 16 23 C -0.09 -4.37 5.12 30.65 0.16 -4.21 16 24 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 25 H 0.00 -0.28 8.14 -2.39 -0.02 -0.29 16 26 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 28 H 0.09 3.08 7.72 -2.39 -0.02 3.07 16 29 H 0.04 1.69 8.12 -2.39 -0.02 1.67 16 30 H 0.25 3.66 8.06 -2.91 -0.02 3.64 16 31 H 0.26 1.99 8.06 -2.91 -0.02 1.97 16 32 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.10 3.74 5.86 -2.39 -0.01 3.73 16 34 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.07 3.97 6.17 -2.39 -0.01 3.95 16 Total: -1.00 -67.11 300.71 0.81 -66.30 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 1.12 Total: 7.17 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 7.44 Total: 3.27 kcal Atomic # 7 Polarization: -115.22 SS G_CDS: -8.46 Total: -123.68 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -1.32 Total: 1.57 kcal Total: -67.11 0.81 -66.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327660317.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.800 kcal (2) G-P(sol) polarization free energy of solvation -67.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds