Wall clock time and date at job start Tue Mar 31 2020 06:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99586 * 2 1 4 4 H 1.48498 * 109.47203 * 269.99941 * 3 2 1 5 5 H 1.48497 * 109.47172 * 30.00156 * 3 2 1 6 6 H 1.48506 * 109.47059 * 150.00326 * 3 2 1 7 7 C 1.37873 * 120.00454 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00441 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99975 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47086 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46937 * 179.97438 * 10 9 7 12 12 O 1.45204 * 109.47103 * 179.97438 * 11 10 9 13 13 C 1.34229 * 116.99900 * 180.02562 * 12 11 10 14 14 O 1.20822 * 120.00021 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99749 * 179.97438 * 13 12 11 16 16 C 1.52577 * 109.19430 * 58.77004 * 15 13 12 17 17 C 1.53036 * 109.99385 * 190.16422 * 16 15 13 18 18 S 1.81667 * 109.07712 * 296.49981 * 17 16 15 19 19 O 1.42099 * 108.66349 * 168.57891 * 18 17 16 20 20 O 1.42099 * 108.66329 * 299.82153 * 18 17 16 21 21 C 1.81664 * 101.31039 * 54.24906 * 18 17 16 22 22 C 1.52588 * 109.23952 * 179.97438 * 15 13 12 23 23 H 0.96999 * 120.00355 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47374 * 59.99715 * 9 7 2 25 25 H 1.09005 * 109.46885 * 299.99302 * 9 7 2 26 26 H 1.08992 * 109.47143 * 59.99729 * 10 9 7 27 27 H 1.09005 * 109.46794 * 299.99487 * 10 9 7 28 28 H 1.09002 * 109.47340 * 59.99956 * 11 10 9 29 29 H 1.09002 * 109.47331 * 299.99906 * 11 10 9 30 30 H 1.08999 * 109.24077 * 299.44166 * 15 13 12 31 31 H 1.09002 * 109.30212 * 70.05475 * 16 15 13 32 32 H 1.09000 * 109.46132 * 310.37482 * 16 15 13 33 33 H 1.09002 * 109.55147 * 176.59390 * 17 16 15 34 34 H 1.09003 * 109.54767 * 56.40206 * 17 16 15 35 35 H 1.09002 * 109.55358 * 65.55729 * 21 18 17 36 36 H 1.08999 * 109.55462 * 185.74896 * 21 18 17 37 37 H 1.08998 * 109.38394 * 49.59972 * 22 15 13 38 38 H 1.09004 * 109.30132 * 289.85697 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4806 -4.9871 0.0012 12 8 2.4242 -6.0907 0.0006 13 6 1.9112 -7.3311 0.0005 14 8 0.7134 -7.4894 0.0014 15 6 2.8293 -8.5261 -0.0007 16 6 3.7283 -8.4693 1.2307 17 6 4.8314 -9.5245 1.1225 18 16 4.0743 -11.1758 1.1110 19 8 5.0646 -12.1275 0.7464 20 8 3.3519 -11.3532 2.3217 21 6 2.8903 -11.0155 -0.2574 22 6 1.9932 -9.8025 0.0001 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6243 -2.5567 0.8904 26 1 2.8722 -3.6042 0.8904 27 1 2.8721 -3.6042 -0.8895 28 1 0.8536 -5.0451 -0.8886 29 1 0.8542 -5.0446 0.8914 30 1 3.4485 -8.5024 -0.8974 31 1 3.1309 -8.6606 2.1221 32 1 4.1800 -7.4801 1.3053 33 1 5.5043 -9.4376 1.9756 34 1 5.3913 -9.3735 0.1995 35 1 3.4313 -10.8772 -1.1936 36 1 2.2796 -11.9162 -0.3188 37 1 1.2366 -9.7399 -0.7820 38 1 1.5046 -9.9126 0.9683 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328049530.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:33 Heat of formation + Delta-G solvation = -181.675867 kcal Electronic energy + Delta-G solvation = -20865.292511 eV Core-core repulsion = 17413.462167 eV Total energy + Delta-G solvation = -3451.830344 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.72020 -37.85374 -37.17796 -36.42334 -36.29600 -34.06892 -32.37747 -31.76876 -29.19072 -27.03712 -24.19594 -23.70338 -22.42867 -20.58764 -20.26362 -19.28796 -17.74924 -17.43272 -16.80805 -16.75199 -16.43591 -16.07469 -15.95183 -14.85769 -14.59241 -14.50179 -14.06330 -13.83036 -13.60367 -13.33478 -12.67524 -12.53916 -12.39889 -12.34837 -12.24090 -12.21512 -12.05004 -11.83475 -11.56899 -11.16248 -11.02026 -10.73283 -10.71935 -10.52255 -10.48750 -10.41477 -9.80795 -9.56966 -9.22152 -8.43745 -6.08404 -4.11824 -0.42594 2.10114 2.21425 2.58079 3.22119 3.27434 3.33948 3.37015 3.52395 3.87654 3.99343 4.10164 4.27874 4.38494 4.39721 4.58525 4.66836 4.84784 5.03193 5.08820 5.27044 5.27681 5.36771 5.47991 5.51577 5.58082 5.63106 5.91683 6.37159 6.45175 6.73091 6.90064 7.54030 7.64511 7.73412 7.89468 8.30096 8.94427 9.52868 11.03014 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.042225 B = 0.002561 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.947923 B =10931.358032 C =11319.278487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.067 3.933 12 O -0.355 6.355 13 C 0.465 3.535 14 O -0.504 6.504 15 C -0.102 4.102 16 C -0.107 4.107 17 C -0.600 4.600 18 S 2.413 3.587 19 O -0.943 6.943 20 O -0.933 6.933 21 C -0.601 4.601 22 C -0.100 4.100 23 H 0.262 0.738 24 H 0.019 0.981 25 H 0.020 0.980 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.121 0.879 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.141 0.859 37 H 0.102 0.898 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.441 -22.241 -0.509 23.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.147 4.147 11 C -0.006 4.006 12 O -0.271 6.271 13 C 0.307 3.693 14 O -0.392 6.392 15 C -0.121 4.121 16 C -0.146 4.146 17 C -0.729 4.729 18 S 2.595 3.405 19 O -0.940 6.940 20 O -0.930 6.930 21 C -0.730 4.730 22 C -0.138 4.138 23 H 0.072 0.928 24 H 0.037 0.963 25 H 0.038 0.962 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.138 0.862 31 H 0.112 0.888 32 H 0.126 0.874 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.159 0.841 37 H 0.120 0.880 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.091 -22.856 0.046 24.246 hybrid contribution 0.151 1.662 -0.669 1.798 sum 8.242 -21.195 -0.623 22.749 Atomic orbital electron populations 1.69959 1.06108 1.26842 1.50414 1.25030 0.94881 0.99403 0.95138 0.86541 0.79808 0.83191 0.78151 1.20603 1.21161 1.19795 1.21158 0.93109 0.90660 1.51177 0.92428 1.19055 0.93828 0.90738 0.97705 1.21774 0.99959 0.90931 1.01987 1.23573 0.91188 0.83454 1.02338 1.86477 1.42768 1.15021 1.82871 1.23090 0.88203 0.85001 0.73041 1.90685 1.16751 1.86813 1.44965 1.21220 0.96918 0.91582 1.02354 1.21294 0.94599 1.01239 0.97429 1.30227 1.10035 1.20173 1.12481 1.08223 0.77152 0.77757 0.77389 1.93604 1.58457 1.57583 1.84400 1.93609 1.72688 1.84817 1.41923 1.30232 1.15706 1.07281 1.19818 1.21197 0.97623 0.88467 1.06544 0.92836 0.96251 0.96198 0.92093 0.92126 0.91387 0.91305 0.86158 0.88834 0.87360 0.84032 0.84374 0.84548 0.84129 0.87955 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 7 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 10 C -0.11 -2.14 5.53 -26.73 -0.15 -2.28 16 11 C 0.07 1.15 5.47 37.16 0.20 1.35 16 12 O -0.36 -5.16 9.87 -39.26 -0.39 -5.55 16 13 C 0.46 5.91 7.24 36.01 0.26 6.17 16 14 O -0.50 -7.90 15.52 -18.75 -0.29 -8.20 16 15 C -0.10 -0.78 2.37 -92.20 -0.22 -1.00 16 16 C -0.11 -0.72 5.01 -26.93 -0.13 -0.85 16 17 C -0.60 -2.75 6.34 37.18 0.24 -2.51 16 18 S 2.41 15.89 5.30 -107.50 -0.57 15.32 16 19 O -0.94 -9.39 18.10 -57.82 -1.05 -10.43 16 20 O -0.93 -9.74 17.96 -57.82 -1.04 -10.78 16 21 C -0.60 -2.72 6.35 37.18 0.24 -2.48 16 22 C -0.10 -0.69 4.47 -26.92 -0.12 -0.81 16 23 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 29 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 30 H 0.12 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.09 0.64 8.03 -51.93 -0.42 0.23 16 32 H 0.11 0.75 7.80 -51.93 -0.41 0.34 16 33 H 0.14 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.14 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.14 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.14 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.10 0.76 7.72 -51.93 -0.40 0.36 16 38 H 0.10 0.72 8.01 -51.93 -0.42 0.30 16 LS Contribution 330.35 15.07 4.98 4.98 Total: -1.00 -36.44 330.35 -8.70 -45.14 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: -5.83 Total: -5.80 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -0.24 Total: -15.16 kcal Atomic # 7 Polarization: -26.42 SS G_CDS: 0.74 Total: -25.68 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -2.76 Total: -34.96 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 15.89 SS G_CDS: -0.57 Total: 15.32 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -36.44 -8.70 -45.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328049530.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.531 kcal (2) G-P(sol) polarization free energy of solvation -36.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds