Wall clock time and date at job start Tue Mar 31 2020 06:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99586 * 2 1 4 4 H 1.48498 * 109.47203 * 269.99941 * 3 2 1 5 5 H 1.48497 * 109.47172 * 30.00156 * 3 2 1 6 6 H 1.48506 * 109.47059 * 150.00326 * 3 2 1 7 7 C 1.37873 * 120.00454 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00441 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99975 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47086 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46937 * 179.97438 * 10 9 7 12 12 O 1.45204 * 109.47103 * 179.97438 * 11 10 9 13 13 C 1.34229 * 116.99900 * 180.02562 * 12 11 10 14 14 O 1.20822 * 120.00021 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99749 * 179.97438 * 13 12 11 16 16 C 1.52577 * 109.19430 * 58.77004 * 15 13 12 17 17 C 1.53036 * 109.99385 * 190.16422 * 16 15 13 18 18 S 1.81667 * 109.07712 * 296.49981 * 17 16 15 19 19 O 1.42099 * 108.66349 * 168.57891 * 18 17 16 20 20 O 1.42099 * 108.66329 * 299.82153 * 18 17 16 21 21 C 1.81664 * 101.31039 * 54.24906 * 18 17 16 22 22 C 1.52588 * 109.23952 * 179.97438 * 15 13 12 23 23 H 0.96999 * 120.00355 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47374 * 59.99715 * 9 7 2 25 25 H 1.09005 * 109.46885 * 299.99302 * 9 7 2 26 26 H 1.08992 * 109.47143 * 59.99729 * 10 9 7 27 27 H 1.09005 * 109.46794 * 299.99487 * 10 9 7 28 28 H 1.09002 * 109.47340 * 59.99956 * 11 10 9 29 29 H 1.09002 * 109.47331 * 299.99906 * 11 10 9 30 30 H 1.08999 * 109.24077 * 299.44166 * 15 13 12 31 31 H 1.09002 * 109.30212 * 70.05475 * 16 15 13 32 32 H 1.09000 * 109.46132 * 310.37482 * 16 15 13 33 33 H 1.09002 * 109.55147 * 176.59390 * 17 16 15 34 34 H 1.09003 * 109.54767 * 56.40206 * 17 16 15 35 35 H 1.09002 * 109.55358 * 65.55729 * 21 18 17 36 36 H 1.08999 * 109.55462 * 185.74896 * 21 18 17 37 37 H 1.08998 * 109.38394 * 49.59972 * 22 15 13 38 38 H 1.09004 * 109.30132 * 289.85697 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4806 -4.9871 0.0012 12 8 2.4242 -6.0907 0.0006 13 6 1.9112 -7.3311 0.0005 14 8 0.7134 -7.4894 0.0014 15 6 2.8293 -8.5261 -0.0007 16 6 3.7283 -8.4693 1.2307 17 6 4.8314 -9.5245 1.1225 18 16 4.0743 -11.1758 1.1110 19 8 5.0646 -12.1275 0.7464 20 8 3.3519 -11.3532 2.3217 21 6 2.8903 -11.0155 -0.2574 22 6 1.9932 -9.8025 0.0001 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6243 -2.5567 0.8904 26 1 2.8722 -3.6042 0.8904 27 1 2.8721 -3.6042 -0.8895 28 1 0.8536 -5.0451 -0.8886 29 1 0.8542 -5.0446 0.8914 30 1 3.4485 -8.5024 -0.8974 31 1 3.1309 -8.6606 2.1221 32 1 4.1800 -7.4801 1.3053 33 1 5.5043 -9.4376 1.9756 34 1 5.3913 -9.3735 0.1995 35 1 3.4313 -10.8772 -1.1936 36 1 2.2796 -11.9162 -0.3188 37 1 1.2366 -9.7399 -0.7820 38 1 1.5046 -9.9126 0.9683 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328049530.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:31 Heat of formation + Delta-G solvation = -207.357190 kcal Electronic energy + Delta-G solvation = -20866.406137 eV Core-core repulsion = 17413.462167 eV Total energy + Delta-G solvation = -3452.943970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -41.76364 -38.62182 -37.96284 -37.27308 -37.03848 -35.93645 -33.68999 -32.81199 -29.99404 -28.68191 -25.41340 -24.59059 -23.45631 -22.16083 -21.25525 -19.81329 -18.82220 -18.50497 -18.04012 -17.69854 -17.27931 -17.22531 -16.62975 -16.49546 -15.79001 -15.22070 -15.01036 -14.85693 -14.24545 -14.12102 -13.99921 -13.77705 -13.63063 -13.32089 -13.20250 -13.04703 -12.85023 -12.82781 -12.51406 -12.49794 -12.33029 -12.13602 -12.07239 -11.77526 -11.67417 -11.39853 -11.36974 -11.19921 -10.95740 -10.57425 -8.22034 -6.33515 -0.90930 1.09766 1.41816 1.43124 1.53421 1.57478 1.77170 2.41246 2.74685 2.97527 3.12225 3.31272 3.47574 3.58974 3.65149 3.98596 4.01362 4.04422 4.06930 4.12553 4.33849 4.43127 4.58109 4.63701 4.80931 4.85076 4.87456 4.95167 5.07115 5.08512 5.10725 5.42941 5.53308 5.64402 5.80531 6.19004 6.65156 6.83122 7.36361 8.90169 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.042225 B = 0.002561 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.947923 B =10931.358032 C =11319.278487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.093 4.093 11 C 0.077 3.923 12 O -0.352 6.352 13 C 0.461 3.539 14 O -0.538 6.538 15 C -0.095 4.095 16 C -0.112 4.112 17 C -0.582 4.582 18 S 2.414 3.586 19 O -0.981 6.981 20 O -0.983 6.983 21 C -0.583 4.583 22 C -0.104 4.104 23 H 0.264 0.736 24 H -0.004 1.004 25 H -0.005 1.005 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.161 0.839 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.155 0.845 34 H 0.173 0.827 35 H 0.172 0.828 36 H 0.154 0.846 37 H 0.100 0.900 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.730 -22.411 -1.534 24.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.013 4.013 10 C -0.131 4.131 11 C 0.003 3.997 12 O -0.268 6.268 13 C 0.305 3.695 14 O -0.428 6.428 15 C -0.114 4.114 16 C -0.150 4.150 17 C -0.713 4.713 18 S 2.601 3.399 19 O -0.978 6.978 20 O -0.980 6.980 21 C -0.714 4.714 22 C -0.142 4.142 23 H 0.073 0.927 24 H 0.014 0.986 25 H 0.014 0.986 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.179 0.821 31 H 0.102 0.898 32 H 0.130 0.870 33 H 0.173 0.827 34 H 0.191 0.809 35 H 0.190 0.810 36 H 0.172 0.828 37 H 0.118 0.882 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.406 -23.077 -0.957 25.333 hybrid contribution -0.614 1.694 -0.375 1.841 sum 9.793 -21.383 -1.332 23.556 Atomic orbital electron populations 1.70096 1.07914 1.27925 1.51541 1.26007 0.95760 1.03541 0.94645 0.85403 0.78683 0.78174 0.78525 1.19728 1.20977 1.18456 1.21637 0.93791 0.91864 1.50731 0.91553 1.18944 0.94334 0.92610 0.95382 1.21447 0.98658 0.90303 1.02688 1.23134 0.90989 0.83751 1.01812 1.86463 1.41778 1.15327 1.83221 1.24171 0.88675 0.85178 0.71439 1.90679 1.18615 1.87007 1.46490 1.21444 0.96429 0.88890 1.04638 1.21327 0.94984 1.02086 0.96614 1.30089 1.09463 1.16631 1.15125 1.07902 0.76761 0.78260 0.76978 1.93558 1.59654 1.59754 1.84798 1.93549 1.73633 1.86011 1.44793 1.30090 1.14770 1.06678 1.19844 1.21207 0.98022 0.89126 1.05889 0.92707 0.98564 0.98626 0.91368 0.91256 0.91884 0.92063 0.82132 0.89750 0.87027 0.82668 0.80895 0.81014 0.82822 0.88193 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.16 13.29 21.45 0.28 -55.88 16 2 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 3 Si 0.97 43.13 29.54 68.60 2.03 45.16 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 7 C -0.54 -29.91 9.11 25.60 0.23 -29.68 16 8 H 0.07 3.46 7.74 -2.91 -0.02 3.43 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.09 -3.62 5.53 30.60 0.17 -3.45 16 11 C 0.08 2.61 5.47 71.98 0.39 3.01 16 12 O -0.35 -9.69 9.87 -51.41 -0.51 -10.19 16 13 C 0.46 11.09 7.24 71.24 0.52 11.60 16 14 O -0.54 -16.76 15.52 21.98 0.34 -16.42 16 15 C -0.10 -1.19 2.37 -11.82 -0.03 -1.22 16 16 C -0.11 -1.20 5.01 30.47 0.15 -1.05 16 17 C -0.58 -3.38 6.34 71.99 0.46 -2.92 16 18 S 2.41 27.87 5.30 -56.49 -0.30 27.57 16 19 O -0.98 -18.19 18.10 -127.38 -2.31 -20.49 16 20 O -0.98 -20.57 17.96 -127.38 -2.29 -22.86 16 21 C -0.58 -3.53 6.35 72.00 0.46 -3.08 16 22 C -0.10 -1.23 4.47 30.48 0.14 -1.09 16 23 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 24 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 25 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 26 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 27 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 28 H 0.06 2.20 8.13 -2.39 -0.02 2.18 16 29 H 0.06 2.16 8.13 -2.39 -0.02 2.14 16 30 H 0.16 0.76 8.09 -2.39 -0.02 0.74 16 31 H 0.08 1.07 8.03 -2.39 -0.02 1.05 16 32 H 0.11 1.21 7.80 -2.39 -0.02 1.19 16 33 H 0.16 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.17 -0.13 8.14 -2.39 -0.02 -0.15 16 35 H 0.17 -0.12 8.14 -2.39 -0.02 -0.14 16 36 H 0.15 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.10 1.29 7.72 -2.39 -0.02 1.28 16 38 H 0.08 1.20 8.01 -2.38 -0.02 1.18 16 Total: -1.00 -80.87 330.35 1.39 -79.49 By element: Atomic # 1 Polarization: -1.29 SS G_CDS: 1.04 Total: -0.25 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: 3.10 Total: -26.12 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: 0.28 Total: -55.88 kcal Atomic # 8 Polarization: -65.21 SS G_CDS: -4.76 Total: -69.97 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: 27.87 SS G_CDS: -0.30 Total: 27.57 kcal Total: -80.87 1.39 -79.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328049530.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.872 kcal (2) G-P(sol) polarization free energy of solvation -80.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds