Wall clock time and date at job start Tue Mar 31 2020 08:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46692 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47025 * 300.00081 * 3 2 1 6 6 H 1.48500 * 109.46740 * 60.00439 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47300 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46925 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00072 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99762 * 179.97438 * 11 10 9 14 14 C 1.46633 * 126.56261 * 359.68954 * 13 11 10 15 15 C 1.50782 * 107.70123 * 179.87839 * 14 13 11 16 16 C 1.38442 * 131.19891 * 180.09039 * 15 14 13 17 17 C 1.38150 * 120.10164 * 180.32759 * 16 15 14 18 18 C 1.38256 * 119.95916 * 359.97438 * 17 16 15 19 19 N 1.48015 * 120.01775 * 179.97438 * 18 17 16 20 20 O 1.21798 * 120.00259 * 359.97438 * 19 18 17 21 21 O 1.21810 * 119.99874 * 180.02562 * 19 18 17 22 22 C 1.38152 * 119.96253 * 359.95087 * 18 17 16 23 23 C 1.38058 * 108.86081 * 0.39390 * 15 14 13 24 24 C 1.46628 * 126.56248 * 179.97438 * 13 11 10 25 25 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 27 27 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 28 28 H 1.09000 * 109.46497 * 60.00269 * 10 9 7 29 29 H 1.09000 * 109.47312 * 300.00049 * 10 9 7 30 30 H 1.08997 * 109.81780 * 299.56658 * 14 13 11 31 31 H 1.09007 * 109.81230 * 60.47037 * 14 13 11 32 32 H 1.07996 * 119.95290 * 0.35495 * 16 15 14 33 33 H 1.07995 * 120.02028 * 180.02562 * 17 16 15 34 34 H 1.07997 * 119.94558 * 180.02562 * 22 18 17 35 35 H 1.08996 * 109.81659 * 299.53157 * 24 13 11 36 36 H 1.09004 * 109.81274 * 60.43780 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4917 -4.9672 -0.0045 12 8 0.2789 -4.9672 -0.0054 13 7 2.1655 -6.1344 -0.0062 14 6 3.6222 -6.3020 -0.0129 15 6 3.9135 -7.7814 -0.0093 16 6 5.1118 -8.4749 -0.0113 17 6 5.1128 -9.8564 -0.0138 18 6 3.9154 -10.5477 -0.0139 19 7 3.9150 -12.0278 -0.0172 20 8 4.9696 -12.6372 -0.0203 21 8 2.8599 -12.6365 -0.0177 22 6 2.7194 -9.8561 -0.0104 23 6 2.7179 -8.4717 -0.0100 24 6 1.5823 -7.4797 -0.0076 25 1 -0.4851 0.8400 0.0004 26 1 0.6247 -2.5563 -0.8920 27 1 0.6240 -2.5576 0.8880 28 1 2.8718 -3.6051 0.8873 29 1 2.8719 -3.6036 -0.8927 30 1 4.0429 -5.8427 -0.9074 31 1 4.0513 -5.8409 0.8768 32 1 6.0472 -7.9351 -0.0104 33 1 6.0482 -10.3960 -0.0149 34 1 1.7843 -10.3964 -0.0100 35 1 0.9720 -7.6188 0.8847 36 1 0.9708 -7.6164 -0.8995 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330070168.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:07 Heat of formation + Delta-G solvation = -8.151177 kcal Electronic energy + Delta-G solvation = -21582.218527 eV Core-core repulsion = 18034.761578 eV Total energy + Delta-G solvation = -3547.456949 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -42.53589 -41.13052 -39.05072 -36.89011 -36.50345 -33.61508 -32.57798 -32.11559 -30.94978 -28.75412 -27.48203 -25.66759 -24.80125 -22.60209 -22.09664 -21.47173 -19.42092 -19.18259 -18.83221 -17.85462 -17.23906 -16.69091 -16.48026 -15.99729 -15.25425 -14.98969 -14.83928 -14.45813 -14.45357 -13.85148 -13.38548 -13.19400 -12.93069 -12.42993 -12.26993 -12.26609 -11.94117 -11.78823 -11.52423 -11.45282 -11.26992 -11.02420 -10.66387 -10.11175 -9.98641 -9.82937 -9.80447 -9.43101 -9.17339 -8.65476 -8.41325 -6.04961 -4.10060 -0.58772 0.38923 0.91864 1.00821 2.69536 2.75713 2.93185 3.26575 3.34079 3.36596 3.47542 3.72713 3.99422 4.31590 4.37450 4.42738 4.54734 4.91484 5.04109 5.06521 5.13839 5.18380 5.23118 5.24180 5.30410 5.40653 5.59661 5.72104 5.98157 6.03820 6.05676 6.16376 6.69544 7.29864 7.46805 7.63891 7.72576 7.95866 8.24861 8.44158 8.97900 9.54197 11.05974 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.045372 B = 0.002614 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.968928 B =10708.466288 C =11294.330647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.035 3.965 10 C -0.123 4.123 11 C 0.536 3.464 12 O -0.519 6.519 13 N -0.630 5.630 14 C 0.139 3.861 15 C -0.048 4.048 16 C -0.094 4.094 17 C -0.051 4.051 18 C -0.044 4.044 19 N 0.031 4.969 20 O -0.160 6.160 21 O -0.159 6.159 22 C -0.033 4.033 23 C -0.099 4.099 24 C 0.149 3.851 25 H 0.261 0.739 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.154 0.846 33 H 0.159 0.841 34 H 0.157 0.843 35 H 0.089 0.911 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.851 -19.493 -0.030 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.567 4.567 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.163 4.163 11 C 0.327 3.673 12 O -0.392 6.392 13 N -0.368 5.368 14 C 0.016 3.984 15 C -0.049 4.049 16 C -0.113 4.113 17 C -0.070 4.070 18 C -0.127 4.127 19 N 0.550 4.450 20 O -0.375 6.375 21 O -0.375 6.375 22 C -0.052 4.052 23 C -0.100 4.100 24 C 0.026 3.974 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.171 0.829 33 H 0.176 0.824 34 H 0.174 0.826 35 H 0.107 0.893 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.933 -18.524 -0.027 21.510 hybrid contribution 0.519 0.342 -0.002 0.621 sum 11.452 -18.182 -0.028 21.488 Atomic orbital electron populations 1.69999 1.06081 1.26635 1.49972 1.25029 0.94838 0.99315 0.95187 0.86522 0.79958 0.83737 0.77664 1.19734 1.20967 1.20961 1.21204 0.92947 0.90842 1.51683 0.92489 1.18947 0.93166 0.89308 0.98803 1.21912 1.00796 0.90854 1.02702 1.21417 0.88139 0.83553 0.74170 1.90720 1.14045 1.86343 1.48103 1.48331 1.06027 1.05292 1.77173 1.20411 0.83132 0.90642 1.04186 1.20932 0.93612 0.96672 0.93657 1.20522 0.98088 0.92141 1.00532 1.20973 0.97248 0.94216 0.94592 1.20875 0.96702 0.79440 1.15702 1.43543 1.00504 1.03452 0.97478 1.94542 1.20685 1.68910 1.53404 1.94564 1.20582 1.69031 1.53330 1.20206 0.97733 0.92756 0.94519 1.20326 0.96583 0.92521 1.00597 1.20150 0.92980 0.80443 1.03850 0.92892 0.95692 0.95679 0.89914 0.89925 0.88450 0.88481 0.82880 0.82380 0.82570 0.89296 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.53 -14.33 9.11 -34.44 -0.31 -14.65 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.04 0.90 4.26 -27.88 -0.12 0.78 16 10 C -0.12 -2.28 4.89 -27.88 -0.14 -2.42 16 11 C 0.54 9.53 7.87 -10.98 -0.09 9.44 16 12 O -0.52 -11.53 16.35 5.56 0.09 -11.44 16 13 N -0.63 -8.15 3.34 -176.12 -0.59 -8.73 16 14 C 0.14 1.22 6.54 -5.08 -0.03 1.19 16 15 C -0.05 -0.37 6.22 -104.57 -0.65 -1.02 16 16 C -0.09 -0.54 10.05 -39.54 -0.40 -0.94 16 17 C -0.05 -0.35 9.56 -39.61 -0.38 -0.73 16 18 C -0.04 -0.40 6.85 -79.97 -0.55 -0.94 16 19 N 0.03 0.34 4.45 33.95 0.15 0.49 16 20 O -0.16 -1.85 18.45 -29.46 -0.54 -2.39 16 21 O -0.16 -1.92 18.45 -29.46 -0.54 -2.46 16 22 C -0.03 -0.28 9.56 -39.54 -0.38 -0.66 16 23 C -0.10 -0.87 6.22 -104.57 -0.65 -1.52 16 24 C 0.15 1.62 6.91 -5.08 -0.04 1.58 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.15 0.44 8.06 -52.49 -0.42 0.02 16 33 H 0.16 0.80 7.61 -52.49 -0.40 0.40 16 34 H 0.16 1.16 7.61 -52.49 -0.40 0.76 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 323.05 15.07 4.87 4.87 Total: -1.00 -33.92 323.05 -8.81 -42.74 By element: Atomic # 1 Polarization: -0.64 SS G_CDS: -4.14 Total: -4.78 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -3.82 Total: -8.33 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.30 Total: -34.14 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -1.00 Total: -16.29 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.92 -8.81 -42.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330070168.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.585 kcal (2) G-P(sol) polarization free energy of solvation -33.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds